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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30701?offset=1160</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/42626/spades-team-announce-new-version-spades-v315</guid>
	<pubDate>Fri, 15 Jan 2021 10:24:27 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/42626/spades-team-announce-new-version-spades-v315</link>
	<title><![CDATA[SPADes team announce new version SPADes v3.15]]></title>
	<description><![CDATA[<p>New SPAdes 3.15.0.0. announced by the SPADes team This release includes such new features as:&nbsp;<br />- CoronaSPAdes pipeline for the assembly of transcriptomic and metatranscriptomic data of full-length coronaviridae genomes;&nbsp;<br />- Meta-Viral and RNA-Viral pipelines for metagenomic and metatranscriptomic data defining viral genomes;&nbsp;<br />-New trusted contiguous use algorithm;&nbsp;<br />-Switched to the memory allocator mimalloc;&nbsp;<br />- PlasmidSPAdes and bgcSPAdes are now provided as an input assembly graph;&nbsp;<br />- Important improvements and corrections to the metaplasmid pipeline;&nbsp;<br />- Multiple performance improvements in procedures for simplification and repeat resolving.&nbsp;<br />Please, consider updating.</p><p>Check out more at&nbsp;https://cab.spbu.ru/software/spades/</p>]]></description>
	<dc:creator>BioStar</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/45226/professor-of-bioinformatics</guid>
  <pubDate>Sat, 15 Aug 2026 12:39:03 -0500</pubDate>
  <link></link>
  <title><![CDATA[Professor of Bioinformatics]]></title>
  <description><![CDATA[
<p>The Department of Statistics are seeking to recruit a Professor of Bioinformatics. The professorship will be held alongside a Fellowship at University College.</p>

<p>The Department is at the forefront of developments in machine learning, data science, and computational methods for understanding complex biological systems, integrating these approaches into both its research and teaching. This role offers significant scope to shape the future of bioinformatics and quantitative biology at Oxford and beyond.</p>

<p>You will be expected to develop and lead a world-class research programme in bioinformatics, helping to strengthen Oxford's position in areas such as statistical genomics, computational biology, machine learning for biological data, engineering biology, systems biology, and biomedical data science. We value the breadth of approaches that contribute to modern bioinformatics. Whatever your particular focus, you will understand how quantitative and computational methods can be applied to important biological and biomedical questions, and how collaboration across disciplines can generate new insights and opportunities. Alongside your own research, you will support the development of doctoral students, postdoctoral researchers, and early-career academics. You will contribute to our teaching at undergraduate and postgraduate level, delivering lectures, supervising student projects, and supporting graduate research students.</p>

<p>We are looking for someone who combines scholarly distinction with a collaborative and ambitious approach to research. You will be a researcher with an international reputation in bioinformatics, with a strong record of producing influential research at the interface of statistics, computational biology, genomics, and data science, and of securing research funding. Your work should advance the field, whether through methodological innovation, biological discovery, or the development of new approaches to understanding complex biological and biomedical data. You will bring experience of shaping research strategy, building productive collaborations, and exercising academic leadership. Above all, we wish to appoint someone who shares our values of intellectual curiosity, academic excellence, scholarly integrity, and a commitment to fostering a positive, supportive, and inclusive environment for all.</p>

<p>If you would like to discuss this post, please contact the Head of the Department of Statistics, Professor Frank Windmeijer, frank.windmeijer@stats.ox.ac.uk, or for information about University College please contact the Senior Tutor, Dr Andrew Bell, andrew.bell@univ.ox.ac.uk. All enquiries will be treated in strict confidence and will not form part of the selection decision.</p>

<p>The closing date for applications is 12:00 noon UK time on Monday 21 September 2026. Interviews are expected to be held in November 2026.</p>

<p>Apply here https://my.corehr.com/pls/uoxrecruit/erq_jobspec_version_4.display_form</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/45337/yeaman-lab</guid>
  <pubDate>Wed, 16 Sep 2026 04:01:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[Yeaman Lab]]></title>
  <description><![CDATA[
<p>The natural world is a diverse place. To contend with highly variable environments, organisms have evolved a wide range of traits and behaviours as adaptations to their environment. From armour plating in stickleback to trade-offs between growth rate and cold tolerance in lodgepole pine, organisms have found many different genetic solutions to the challenge of existing in their environment. In my lab, we study a range of questions asking how such complex adaptations evolve: <br />How is the genetic basis of local adaptation shaped by the interplay between natural selection and dispersal?<br />Does the architecture of genome evolve to facilitate further adaptation?<br />How can we use genomic technologies and bioinformatics to study adaptation?<br />How do organisms adapt to rapidly changing environments?</p>

<p>To attempt to answer these questions about the basics of how evolution works, we use a combination of computational biology, analytical theory, comparative genomics.</p>

<p>More at https://yeamanlab.weebly.com</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/87/linux-cheat-sheet</guid>
	<pubDate>Tue, 09 Jul 2013 17:30:04 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/87/linux-cheat-sheet</link>
	<title><![CDATA[Linux Cheat Sheet]]></title>
	<description><![CDATA[<p><span>In an attempt to find a good Linux reference for bioinformatician and BOL readers, I was unsuccessful at finding a decent one on the Internet. So, we decided to make a cheat sheet for biological programmers.</span></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/87" length="81260" type="application/pdf" />
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/3889/bioinformatics-and-sequencing-courses-and-workshops</guid>
	<pubDate>Sat, 24 Aug 2013 16:41:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/3889/bioinformatics-and-sequencing-courses-and-workshops</link>
	<title><![CDATA[Bioinformatics and Sequencing Courses and Workshops]]></title>
	<description><![CDATA[<p>Swiss Institute of Bioinformatics (SIB) organises lots of bioinformatics courses covering wide range of topics:</p><p><a href="http://www.isb-sib.ch/education/training-courses.html">http://www.isb-sib.ch/education/training-courses.html</a></p><p>Canadian bioinformatics also organises various bioinformatics and sequencing courses:</p><p><a href="http://bioinformatics.ca/workshops">http://bioinformatics.ca/workshops</a></p><p>In addition to above two, EMBI&nbsp;Europe, EMBO Europe, Cold Spring Harbour USA, Wellcome Trust UK and NOVA&nbsp;Europe&nbsp;also organise bioinformatics and sequencing courses annually:</p><p><a href="http://www.embl.de/training/events/index.php?p_outstation=ALL">http://www.embl.de/training/events/index.php?p_outstation=ALL</a></p><p><a href="http://www.embo.org/funding-awards/courses-workshops">http://www.embo.org/funding-awards/courses-workshops</a></p><p><a href="http://meetings.cshl.edu/courses.html">http://meetings.cshl.edu/courses.html</a></p><p><a href="http://www.wellcome.ac.uk/Education-resources/Courses-and-conferences/Advanced-Courses-and-Scientific-Conferences/Advanced-Courses/index.htm">http://www.wellcome.ac.uk/Education-resources/Courses-and-conferences/Advanced-Courses-and-Scientific-Conferences/Advanced-Courses/index.htm</a></p><p><a href="http://www.nova-university.org/pagetop.cfm?MenySidorTop_id=2&amp;open=7">http://www.nova-university.org/pagetop.cfm?MenySidorTop_id=2&amp;open=7</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/396/bioinformatics-introduction-to-perl</guid>
	<pubDate>Thu, 11 Jul 2013 09:49:37 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/396/bioinformatics-introduction-to-perl</link>
	<title><![CDATA[Bioinformatics: Introduction to PERL]]></title>
	<description><![CDATA[<p>This course is aimed at those new to programming and provides an introduction to programming using <strong>Perl</strong>. By the end of this course, attendees should be able to write simple <strong>Perl</strong> programs and to understand more complex <strong>Perl</strong> programs written by others. The course will be taught using the online <a href="http://sofiarobb.com/learning-perl-toc/" title="http://sofiarobb.com/learning-perl-toc/">Learning Perl</a> materials created by <a href="http://stajich.bioinformatics.ucr.edu/members/sofia-robb" title="http://stajich.bioinformatics.ucr.edu/members/sofia-robb">Sofia Robb</a> of the <a href="http://www.ucr.edu/" title="http://www.ucr.edu/">University of California Riverside</a>. Further information is <a href="http://ruddles.bio.cam.ac.uk/%7Edpjudge/Descriptions/PERL.php" title="http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/PERL.php">available</a>.</p>]]></description>
	<dc:creator>Archana Malhotra</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4210/uni-computing-bergen-norway</guid>
  <pubDate>Tue, 03 Sep 2013 18:40:50 -0500</pubDate>
  <link></link>
  <title><![CDATA[Uni Computing Bergen Norway]]></title>
  <description><![CDATA[
<p>Info on Uni Computing (Webpage: http://www.bccs.uni.no/) :</p>

<p>Uni Computing (formerly Uni BCCS) is a department of Uni Research, affiliated with the University of Bergen.</p>

<p>5 groups in this lab works on computational resources, methods, algorithms, and software.</p>

<p>Following two bioinformatics groups are:</p>

<p>The Computational Biology Unit (CBU) provides education and research in bioinformatics focused on functional genomics.</p>

<p>The Computational Ecology Unit (CEU) is basically deal with population fluctuations, behavioural patterns and the ways life cycles emerge.</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/842/ngs-bioinformatics-summit-europe</guid>
  <pubDate>Sat, 13 Jul 2013 17:02:34 -0500</pubDate>
  <link></link>
  <title><![CDATA[NGS &amp; Bioinformatics Summit Europe]]></title>
  <description><![CDATA[
<p>NGS &amp; Bioinformatics Summit Europe </p>

<p>Conference </p>

<p>7th   to  8th October 2013 <br />Berlin, Germany </p>

<p>Website: https://www.gtcbio.com/conference/ngseurope-overview <br />Contact person: Kristen Starkey </p>

<p>We welcome you to join us at GTC’s NGS &amp; Bioinformatics Summit Europe on October 7-8, 2013 in Berlin, Germany. </p>

<p>Organized by: GTC <br />Deadline for abstracts/proposals: 7th September 2013</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/5401/the-minerva-research-group-for-bioinformatics-janet-kelso</guid>
  <pubDate>Wed, 09 Oct 2013 12:57:45 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Minerva Research Group for Bioinformatics (Janet Kelso)]]></title>
  <description><![CDATA[
<p>The focus of this group is to use computational approaches to gain an insight into genome evolution in primates.</p>

<p>PNAS papers:<br />http://www.pnas.org/search?author1=Janet+Kelso&amp;sortspec=date&amp;submit=Submit</p>

<p>Jobs:<br />http://www.eva.mpg.de/genetics/bioinformatics/jobs.html</p>

<p>Contact:<br />Kelso Group<br />Department of Evolutionary Genetics<br />Max Planck Institute for Evolutionary Anthropology<br />Deutscher Platz 6<br />04103 Leipzig<br />Germany<br />Email: kelso@eva.mpg.de</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/859/boku-chair-of-bioinformatics</guid>
  <pubDate>Sun, 14 Jul 2013 12:37:23 -0500</pubDate>
  <link></link>
  <title><![CDATA[Boku Chair of Bioinformatics]]></title>
  <description><![CDATA[
<p>The Bioinformatics group at Boku University has two main areas of interest, underpinning a common goal, the study of complex systems in living organisms. To overcome the engineered redundancies and combinatorial effects prevalent in higher eukaryotes, novel views augmenting the classical gene by gene approaches are required. We combine<br />Work to establish improved quantitative experimental assays (such as microarrays or differential in-gel electrophoresis) and<br />Development of modern computational methods (such as hierarchical probabilistic models or integration of heterogeneous data sources)</p>

<p>Link @ http://bioinf.boku.ac.at/</p>
]]></description>
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