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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30701?offset=980</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25504/uas-dharwad-assistant-professor</guid>
  <pubDate>Fri, 04 Dec 2015 21:06:23 -0600</pubDate>
  <link></link>
  <title><![CDATA[UAS Dharwad Assistant Professor]]></title>
  <description><![CDATA[
<p>UNIVERSITY OF AGRICULTURAL SCIENCES, DHARWAD</p>

<p>Applications are invited in the prescribed form for filling up the following posts of Teachers and Service Personnel from the candidates who are qualified as on the last date fixed for receipt of applications in the University of Agricultural Sciences, Dharwad.</p>

<p>I. ASSISTANT PROFESSOR CADRE (Scale of pay Rs.15600-39100 + AGP Rs. 6000) (UGC / ICAR pay-scales)</p>

<p>I. Re-notified posts:</p>

<p>9. Assistant Professor of Bioinformatics 1 GM-1</p>

<p>More Info : https://sites.google.com/a/uasd.in/recruitment/</p>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25770/fellowship-doctoral-research-in-biomedical-genomics-including-statistical-genomics</guid>
  <pubDate>Sun, 20 Dec 2015 06:03:43 -0600</pubDate>
  <link></link>
  <title><![CDATA[Fellowship (Doctoral Research In Biomedical Genomics, Including Statistical Genomics)]]></title>
  <description><![CDATA[
<p>Fellowship (Doctoral Research In Biomedical Genomics, Including Statistical Genomics)<br />Eligibility : MSc(Bio-Chemistry, Bio-Informatics, Bio-Tech, Mathematics / Applied Mathematics, Stati, Zoology)<br />Location : Kolkata<br />Last Date : 31 Dec 2015<br />Hiring Process : Written-test</p>

<p>NO: 340/ESTB/ADMN/NIBMG/2015-16 <br />Doctoral Research In Biomedical Genomics, Including Statistical Genomics conduct National Institute of Biomedical Genomics (NIBMG)<br />Information For Students Interested To Pursue Doctoral Research In Biomedical Genomics, Including Statistical Genomics, At The National Institute Of Biomedical Genomics (Nibmg), Kalyan<br />Eligibility conditions for specific areas of research are :<br />Statistical Genomics : An applicant who wishes to pursue research in Statistical Genomics should hold a Master's degree (First class or equivalent) in a relevant discipline (Statistics, Mathematics, Bioinformatics, or a related discipline)<br />Biomedical Genomics : An applicant who wishes to pursue research in any area of biomedical genomics, other than statistical genomics, should hold a Master's degree (First class or equivalent) in a relevant discipline (Biochemistry, Biotechnology, Molecular Biology, Genetics, Zoology, Physiology, or a related discipline)<br />Fellowship : An applicant should have passed the NET conducted by CSIR/UGC/ICMR/DBT within the past ONE year AND should have been awarded a valid Junior Research Fellowship from CSIR, UGC, ICMR, DBT (Category-I only), DST (INSPIRE), NBHM. Preference will be given to candidates with demonstrable research training in the form of summer training or short-term courses in established research laboratories in preparation for a research career in biomedical sciences<br />How to apply<br />Online application will be accepted until 5 PM of December 31, 2015. A formal interview of the short-listed candidates will be held on January 12, 2016</p>

<p>More at http://www.nibmg.ac.in/?q=Career%20Opportunities</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36800/genomemapper-simultaneous-alignment-of-short-reads-against-multiple-genomes</guid>
	<pubDate>Fri, 25 May 2018 09:29:44 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36800/genomemapper-simultaneous-alignment-of-short-reads-against-multiple-genomes</link>
	<title><![CDATA[GenomeMapper: Simultaneous alignment of short reads against multiple genomes]]></title>
	<description><![CDATA[GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used to align against multiple genomes simulanteously or against a single reference. If you are unsure which one is the appropriate GenomeMapper, you might want to use the latter

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2768987/<p>Address of the bookmark: <a href="http://1001genomes.org/software/genomemapper.html" rel="nofollow">http://1001genomes.org/software/genomemapper.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37502/alignqc-a-tool-for-assessing-an-alignment-and-generating-reports-that-are-easy-to-share</guid>
	<pubDate>Tue, 07 Aug 2018 04:41:07 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37502/alignqc-a-tool-for-assessing-an-alignment-and-generating-reports-that-are-easy-to-share</link>
	<title><![CDATA[AlignQC: A tool for assessing an alignment, and generating reports that are easy to share]]></title>
	<description><![CDATA[<p><span>Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser compatible xhtml to visualize/share/store/extract analysis results.</span></p>
<p>https://f1000research.com/articles/6-100/</p>
<p>https://github.com/jason-weirather/AlignQC</p><p>Address of the bookmark: <a href="https://www.healthcare.uiowa.edu/labs/au/AlignQC/" rel="nofollow">https://www.healthcare.uiowa.edu/labs/au/AlignQC/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26568/research-scientist-at-iit-madras</guid>
  <pubDate>Mon, 07 Mar 2016 04:06:13 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Scientist at IIT Madras]]></title>
  <description><![CDATA[
<p>Research Scientist/Project Associate/Project Assistant Jobs opportunity in Indian Institute of Technology Madras (IIT Madras)</p>

<p>Research Scientist</p>

<p>Qualification : Ph.D in any branch of life science or bioinformatics or computational biology Experience : Previous experience in Molecular Biology, Cell Biology, Biochemistry and Genome/big data analysis is desirable but not mandatory</p>

<p>No. of Vacancy : 02</p>

<p>Project Associate</p>

<p>Qualification : MSc in any branch of life science Experience Previous experience in Molecular Biology, Cell Biology and Biochemistry is desirable but not mandatory</p>

<p>No. of Vacancy : 02</p>

<p>Project Assistant</p>

<p>Qualification : BSc in any branch of life science or chemical science Experience Previous experience any branch in Life science, Molecular Biology, Cell Biology and Biochemistry is desirable but not mandatory</p>

<p>No. of Vacancy : 03<br />How to apply</p>

<p>Interested candidates can forward their profiles to email id: nctb@iitm.ac.in latest by 18th March, 2016</p>

<p>More at https://www.iitm.ac.in/content/national-cancer-tissue-bio-bank-department-biotechnology-iitm-chennai-vacancy-various-post<br />https://www.iitm.ac.in/sites/default/files/notices/vacancy.pdf</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37776/rhat-a-seed-and-extension-based-noisy-long-read-alignment-tool</guid>
	<pubDate>Sun, 23 Sep 2018 05:12:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37776/rhat-a-seed-and-extension-based-noisy-long-read-alignment-tool</link>
	<title><![CDATA[rHAT: a seed-and-extension-based noisy long read alignment tool]]></title>
	<description><![CDATA[<p><span>rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT) sequencing reads.</span></p><p>Address of the bookmark: <a href="https://github.com/dfguan/rHAT" rel="nofollow">https://github.com/dfguan/rHAT</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26250/research-fellow-bioinformatics-at-central-university-of-rajasthan</guid>
  <pubDate>Tue, 02 Feb 2016 00:04:50 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Fellow Bioinformatics at Central University of Rajasthan]]></title>
  <description><![CDATA[
<p>Research Fellow Bioinformatics</p>

<p>Eligibility : MSc(Bio-Chemistry, Bio-Informatics, Bio-Tech)<br />Location : Ajmer<br />Last Date : 13 Feb 2016<br />Hiring Process : Face to Face Interview<br />Central University of Rajasthan</p>

<p>Research Fellow Job vacancies in Central University of Rajasthan</p>

<p>Project Title : “Development of natural product derived febrifugine ananlogues as a novel therapeutics against visceral leishmaniasis”</p>

<p>No. of Post : 01</p>

<p>Qualification : Master of Biochemistry, Biotechnology, Bioinformatics and related biological sciences with minimum 55%, Age limit as per government rule.</p>

<p>Desirable Experience : Candidates with experience in cell culture, Chemoinformatics, and Parasitology will be preferred.    </p>

<p>Fellowship : Rs. 25,000/- p.m. consolidated for NET qualified (14,000/- p.m. consolidated for Non-NET)<br />How to apply</p>

<p>The candidates may apply on a plain paper, along with their curriculum vitae (including name, date of birth, academic qualification starting from 10th class, summary of research experience, email id, phone number and passport size photograph) and email to vkprajapati@curaj.ac.in or post the hard copy to the Dr. Vijay Kumar Prajapati PI, DST-SERB Project (YSS/2015/000716), Department of Biochemistry, School of Life Sciences, Central University of Rajasthan, Bandarsindri, Dist- Ajmer, Rajasthan, 305 817 on or before 13th February 2016.</p>

<p>More at http://www.curaj.ac.in/Default.aspx?PageId=241</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40217/shouji-a-fast-and-efficient-pre-alignment-filter-for-sequence-alignment</guid>
	<pubDate>Mon, 04 Nov 2019 07:09:45 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40217/shouji-a-fast-and-efficient-pre-alignment-filter-for-sequence-alignment</link>
	<title><![CDATA[Shouji: a fast and efficient pre-alignment filter for sequence alignment]]></title>
	<description><![CDATA[<p>The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explore the use of hardware/software co-design and hardware acceleration to significantly reduce the execution time of short sequence alignment, a crucial step in analyzing sequenced genomes.</p>
<p>&nbsp;<img src="https://github.com/BilkentCompGen/Shoji/raw/master/Figure1-GitHub.png" alt="image" style="border: 0px;"></p>
<p>We introduce Shouji, a highly parallel and accurate pre-alignment filter that remarkably reduces the need for computationally-costly dynamic programming algorithms. The first key idea of our proposed pre-alignment filter is to provide high filtering accuracy by correctly detecting all common subsequences shared between two given sequences. The second key idea is to design a hardware accelerator design that adopts modern FPGA (field-programmable gate array) architectures to further boost the performance of our algorithm.</p>
<p>More at <a href="https://github.com/CMU-SAFARI/Shouji">https://github.com/CMU-SAFARI/Shouji</a></p><p>Address of the bookmark: <a href="https://github.com/CMU-SAFARI/Shouji" rel="nofollow">https://github.com/CMU-SAFARI/Shouji</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42405/caretta-%E2%80%93-a-multiple-protein-structure-alignment-and-feature-extraction-suite</guid>
	<pubDate>Fri, 18 Dec 2020 02:09:44 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42405/caretta-%E2%80%93-a-multiple-protein-structure-alignment-and-feature-extraction-suite</link>
	<title><![CDATA[Caretta – A multiple protein structure alignment and feature extraction suite]]></title>
	<description><![CDATA[<h3>Caretta &ndash;&nbsp;a multiple protein structure alignment and feature extraction suite</h3>
<p><span>Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments with a higher coverage than current state-of-the-art tools. Caretta is available as a GUI and command-line application and additionally outputs an aligned structure feature matrix for a given set of input structures, which can readily be used in downstream steps for supervised or unsupervised machine learning.&nbsp;</span></p><p>Address of the bookmark: <a href="http://www.bioinformatics.nl/caretta/" rel="nofollow">http://www.bioinformatics.nl/caretta/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26382/project-assistant-jrf-at-north-eastern-hill-university</guid>
  <pubDate>Fri, 12 Feb 2016 09:23:01 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant/ JRF at North Eastern Hill University]]></title>
  <description><![CDATA[
<p>Project Assistant/ JRF</p>

<p>Eligibility : ME/M.Tech, Any Graduate, MSc</p>

<p>Location : Shillong</p>

<p>Last Date : 23 Feb 2016</p>

<p>Hiring Process : Face to Face Interview<br />North Eastern Hill University</p>

<p>Project Assistant/ JRF Jobs recruitment in North Eastern Hill University on temporary basis</p>

<p>Project Title : "Next Generation Sequencing (NGS)-based de novo assembly of expressed transcripts and genome information of Orchids in North-East India"</p>

<p>Project Assistant</p>

<p>No. of Post : 01</p>

<p>Qualifications : Graduation</p>

<p>Desirable : Experience of working in a Life Science/Plant Biotechnology lab. and familiarity with computers and field work viz. collection of samples.</p>

<p>JRF</p>

<p>No. of Post : 01</p>

<p>Qualifications : M.Tech/M.Sc in Life Sciences/Botany/Biotechnology/ Bioinformatics;</p>

<p>Desirable : Aptitude for Bioinformatics and Computer Programming/ Next generation sequencing data analysis<br />How to apply</p>

<p>The applications through email bicnehu@gmail.com or post must reach the Dr. Devendra Kumar Biswal, Co-Principal Investigator (Co-PI) within 15 days from the date of publication of this advertisement.</p>

<p>More at http://www.nehu.ac.in/Advertisements/projectVacancy.php</p>
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