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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30744?offset=20</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27463/bpipe-a-tool-for-running-and-managing-bioinformatics-pipelines</guid>
	<pubDate>Sat, 21 May 2016 22:42:16 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27463/bpipe-a-tool-for-running-and-managing-bioinformatics-pipelines</link>
	<title><![CDATA[Bpipe - a tool for running and managing bioinformatics pipelines]]></title>
	<description><![CDATA[<p>Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'.</p>
<ul>
<li>January 20th, 2016 - New! Bpipe 0.9.9 released!</li>
<li>Download <a href="http://download.bpipe.org/versions/bpipe-0.9.9.tar.gz">latest</a>, <a href="http://download.bpipe.org">all</a></li>
<li><a href="http://docs.bpipe.org">Documentation</a></li>
<li><a href="https://groups.google.com/forum/#%21forum/bpipe-discuss">Mailing List</a> (Google Group)</li>
</ul>
<p>Bpipe has been published in <a href="http://bioinformatics.oxfordjournals.org/content/early/2012/04/11/bioinformatics.bts167.abstract">Bioinformatics</a>! If you use Bpipe, please cite:</p>
<p><em>Sadedin S, Pope B &amp; Oshlack A, Bpipe: A Tool for Running and Managing Bioinformatics Pipelines, Bioinformatics</em></p><p>Address of the bookmark: <a href="http://docs.bpipe.org/" rel="nofollow">http://docs.bpipe.org/</a></p>]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27274/bioinformatics-national-certification-binc-examination-2016</guid>
  <pubDate>Wed, 11 May 2016 02:17:44 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics National Certification (BINC) Examination 2016]]></title>
  <description><![CDATA[
<p>Bioinformatics National Certification (BINC) Examination 2016</p>

<p>Department of Biotechnology, Government of India, New Delhi &amp; Pondicherry University, Puducherry</p>

<p>Starting of online submission of application : April 13, 2016</p>

<p>Last date for submission of application : May 13, 2016</p>

<p>Examination consists of two parts:</p>

<p>Part - I (Paper - I) : June 12, 2016 (10 AM -12 PM)<br />Part - II (Paper • II &amp; III) : June 26, 2016 (9 AM • 12 PM &amp; 2 PM • 4 PM)</p>

<p>Objective: Pondicherry University, on behalf of the Department of Biotechnology (DBT),<br />Government of India, will conduct the Bioinformatics National Certification (BING) examination. The objective of this examination is to identify Bioinformatics professionals<br />for further studies as well as to help potential employers in recruitment of candidates having exceptionally good Bioinformatics skills.</p>

<p>Eligibility : Bachelor degree in Life Sciences, Physical Sciences, Chemical Sciences, Mathematical Sciences, Agriculture, Veterinary, Medicine, Pharmacy, Engineering and Technology are eligible to appear for the examination. They need not have any formal training, diploma or certificate in Bioinformatics.</p>

<p>Application and syllabus : The online application can be filled from April 13, 2016 to May 13, 2016.</p>

<p>Syllabus for the examination is available online.</p>

<p>It consists of five sections:<br />Bioinformatics, Biology, Physical and Chemical Sciences, Mathematics &amp; Statistics and Computer Science &amp; Information Technology.</p>

<p>Examination : The examination fee is Rs. 600/- for general candidates, Rs. 400/- for women/OBC candidates and Rs. 200 for SC/ST candidates, and no fee for physically challenged candidates.</p>

<p>The online Part - I (Paper - I) examination is scheduled on June 12,2016 and Part- II (Paper - II and Paper- III) on June 26, 2016. The Paper- I will be of objective type and candidates scoring a minimum of 40% marks in Paper - I will be called to appear in Part II examination.</p>

<p>Part II examination consists of two papers : The Paper - II will be of short answer type questions of three hours duration while the Paper- III will be a practical examination of two hours duration to test analytical ability and programming skill of candidates.</p>

<p>Research Fellowships for all the successful candidates those who are interested and qualified in pursuing Ph.D. in India will be awarded. In addition, cash prizes will be  awarded to the top 10 successful candidates.</p>

<p>The details of examination centres, other details and submission of application, please<br />visit: http://www.pondiuni.edu.in/exams/binc/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/27318/sample-binc-question-paper-2016-part2</guid>
	<pubDate>Fri, 13 May 2016 03:42:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/27318/sample-binc-question-paper-2016-part2</link>
	<title><![CDATA[Sample BINC question paper 2016 - part2]]></title>
	<description><![CDATA[<p>Download the sample question paper for BINC 2016 - paer II</p>]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/27318" length="52024" type="application/pdf" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/39606/amity-university-bioinformatics-summer-program-kolkata</guid>
	<pubDate>Tue, 11 Jun 2019 21:27:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/39606/amity-university-bioinformatics-summer-program-kolkata</link>
	<title><![CDATA[Amity University Bioinformatics Summer Program - Kolkata]]></title>
	<description><![CDATA[<p>Registrations are now open for the 2019 Summer Bioinformatics Training program at Amity University, Kolkata. The program will focus on introductory topics for life science students. We will review important history, topics and challenges bioinformatics can help address in the context of basic research, discovery and industry.</p><p>Read more: https://edu.t-bio.info/amity-university-summer-bioinformatics-program-registrations-are-open/</p>]]></description>
	<dc:creator>eliabrodsky</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/31353/concoct-clustering-contigs-with-coverage-and-composition</guid>
	<pubDate>Mon, 06 Mar 2017 04:08:16 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/31353/concoct-clustering-contigs-with-coverage-and-composition</link>
	<title><![CDATA[CONCOCT: Clustering cONtigs with COverage and ComposiTion]]></title>
	<description><![CDATA[<p>A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads.</p>
<p>Warning! This software is to be considered under development. Functionality and the user interface may still change significantly from one version to another. If you want to use this software, please stay up to date with the list of known issues:<a href="https://github.com/BinPro/CONCOCT/issues">https://github.com/BinPro/CONCOCT/issues</a></p><p>Address of the bookmark: <a href="https://github.com/BinPro/CONCOCT" rel="nofollow">https://github.com/BinPro/CONCOCT</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/31382/seqmule-automated-human-exomegenome-variants-detection</guid>
	<pubDate>Tue, 07 Mar 2017 10:12:36 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/31382/seqmule-automated-human-exomegenome-variants-detection</link>
	<title><![CDATA[SeqMule: Automated human exome/genome variants detection]]></title>
	<description><![CDATA[<p><span>SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file. SeqMule also has some built-in functions, such as pooling consensus calls from various callers, plotting a Venn diagram showing intersection among different callers, and downloading databases. SeqMule can be used for both Mendelian disease study and cancer genome study.</span></p><p>Address of the bookmark: <a href="http://seqmule.openbioinformatics.org/en/latest/" rel="nofollow">http://seqmule.openbioinformatics.org/en/latest/</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/31564/htslib</guid>
	<pubDate>Wed, 15 Mar 2017 11:38:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/31564/htslib</link>
	<title><![CDATA[HTSlib]]></title>
	<description><![CDATA[<p>Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three separate repositories:</p>
<dl><dt>Samtools</dt><dd>Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format</dd><dt>BCFtools</dt><dd>Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants</dd><dt>HTSlib</dt><dd>A C library for reading/writing high-throughput sequencing data</dd></dl>
<p>Samtools and BCFtools both use HTSlib internally, but these source packages contain their own copies of htslib so they can be built independently.</p><p>Address of the bookmark: <a href="http://www.htslib.org/" rel="nofollow">http://www.htslib.org/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/31881/gbtools-interactive-visualization-of-metagenome-bins-in-r</guid>
	<pubDate>Sun, 26 Mar 2017 15:41:31 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/31881/gbtools-interactive-visualization-of-metagenome-bins-in-r</link>
	<title><![CDATA[gbtools: Interactive Visualization of Metagenome Bins in R]]></title>
	<description><![CDATA[<p><span>We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to annotate the plots with taxonomic information. Different sets of annotations, including taxonomic assignments from conserved marker genes or SSU rRNA genes, can be imported simultaneously; users can choose which annotations to plot. Bins can be manually defined from plots, or be imported from third-party binning tools and overlaid onto plots, such that results from different methods can be compared side-by-side. gbtools reports summary statistics of bins including marker gene completeness, and allows the user to add or subtract bins with each other.&nbsp;</span></p>
<p><span>Tool at&nbsp;https://github.com/kbseah/genome-bin-tools</span></p><p>Address of the bookmark: <a href="http://journal.frontiersin.org/article/10.3389/fmicb.2015.01451/full" rel="nofollow">http://journal.frontiersin.org/article/10.3389/fmicb.2015.01451/full</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32048/json</guid>
	<pubDate>Tue, 04 Apr 2017 08:02:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32048/json</link>
	<title><![CDATA[JSON]]></title>
	<description><![CDATA[<p><strong>JSON</strong>&nbsp;(JavaScript Object Notation) is a lightweight data-interchange format. It is easy for humans to read and write. It is easy for machines to parse and generate. It is based on a subset of the&nbsp;<a href="http://javascript.crockford.com/">JavaScript Programming Language</a>,&nbsp;<a href="http://www.ecma-international.org/publications/files/ecma-st/ECMA-262.pdf">Standard ECMA-262 3rd Edition - December 1999</a>. JSON is a text format that is completely language independent but uses conventions that are familiar to programmers of the C-family of languages, including C, C++, C#, Java, JavaScript, Perl, Python, and many others. These properties make JSON an ideal data-interchange language.</p>
<p>JSON is built on two structures:</p>
<ul>
<li>A collection of name/value pairs. In various languages, this is realized as an&nbsp;<em>object</em>, record, struct, dictionary, hash table, keyed list, or associative array.</li>
<li>An ordered list of values. In most languages, this is realized as an&nbsp;<em>array</em>, vector, list, or sequence.</li>
</ul>
<p>These are universal data structures. Virtually all modern programming languages support them in one form or another. It makes sense that a data format that is interchangeable with programming languages also be based on these structures.</p><p>Address of the bookmark: <a href="http://json.org/" rel="nofollow">http://json.org/</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/39262/biotechnology-eligibility-test-bet-answer-set</guid>
	<pubDate>Wed, 17 Apr 2019 04:57:58 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/39262/biotechnology-eligibility-test-bet-answer-set</link>
	<title><![CDATA[Biotechnology Eligibility Test (BET) Answer set !]]></title>
	<description><![CDATA[<p>DBT-BET JRF 2019 Exam was held successfully on 14th April 2019. Official Question Paper &amp; Answer key of&nbsp;DBT-BET 2019 Exam has been released.</p><p>The best part about the DBT-BET Exam is both the question paper &amp; answer key is released immediately after the exam so you get the upper hand here to check how well you did in the DBT-BET exam, how much you are going to score and if you can pass the Exam with good score. This helps you in planning your career ahead.</p><p>DBT Exam is held once in a year by Department of Biotechnology &ndash; Govt of India.&nbsp;Candidates willing to get DBT-Junior Research Fellowship &ndash; DBT JRF fellowship should take up the&nbsp; DBT-BET Exam, DBT &ndash; Biotechnology Eligibility Test (BET) 2020 to be held on somewhere in the month of April. Official Notification for DBT-BET 2020 will be released in Feb 2020.</p><p>Question at&nbsp;<a href="https://bioinformaticsonline.com/file/view/39260/biotechnology-eligibility-test-bet-question-paper">https://bioinformaticsonline.com/file/view/39260/biotechnology-eligibility-test-bet-question-paper</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/39262" length="88016" type="application/pdf" />
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