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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30831?offset=430</link>
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	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28879/projects-opening-at-nbagr</guid>
  <pubDate>Wed, 24 Aug 2016 04:13:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[Projects opening at NBAGR]]></title>
  <description><![CDATA[
<p>ICAR - NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES</p>

<p>Karnal -132001 (Haryana)</p>

<p>A walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal (Haryana)-132001 at 10:30 AM on 05.09.2016 for the selection of Three Research Associate &amp; One Young Professional - II as per details given below:</p>

<p>Name of the Scheme / Project: Center for Agricultural Bioinformatics. The post duration is Upto 31.032017 or earlier &amp; Co-terminus with the project.</p>

<p>Research Associate (Three posts)</p>

<p>Date &amp; Time of Interview: 10.30 A.M. on 05.09.2016</p>

<p>Essential Qualifications: PhD degree in any one of discipline/Subject Biotechnology/ Animal Genetics and Breeding/ Biochemistry/ Bioinformatics/Molecular Genetics OR Master’s degree in any one of above mentioned discipline/Subject with 4 years/5 years of Bachelor’s degree having 1st division or 60% marks or equivalent overall grade point average, with at least two years of research experience as evidenced from Fellowship/Associateship</p>

<p>Desirable Qualifications: Experience in Database/Next Generation Sequencing Data analysis for 02 RA posts or working experience in molecular biology, gene expression data analysis, SNP genotyping and sequence data analysis, functional gene characterization for 01 RA post.</p>

<p>Young Professionals II One position</p>

<p>Date &amp; Time of Interview: 10.30 A.M. on 05.09.2016</p>

<p>Essential: B. Tech or M.Tech. in Bioinformatics / Computer Science / Computer Application.</p>

<p>Desirable: Experience in Linux, MySQL, Java, C++/ PHP/ PERL R based data analysis and application development in Bioinformatics.</p>

<p>More Info : http://14.139.252.116/ADvertisementforCabinScheme.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27927/research-assistant-bioinformatics-at-andhra-university</guid>
  <pubDate>Sat, 18 Jun 2016 18:39:09 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Assistant Bioinformatics at Andhra University]]></title>
  <description><![CDATA[
<p>Advt. No. AUMLR/BIF/ RA /6-2016 <br />Research Assistant Job Position in Andhra University on temporary basis <br />No. of Post : 01<br />Eligibility : Applicants who have completed their Post Graduate degree in Bioinformatics.<br />Desirable : Undergone traineeship in BIF; at least one publication in Bioinformatics. <br />Stipend : A monthly stipend of Rs. 22,000/- + HRA (HRA is applicable only for NET qualified candidates)<br />How to apply<br />Applications on plain paper, stating the name, address, date of birth, educational qualifications and experiences, and Institute, along with attested photocopies of mark sheets and certificates, should be submitted to K. UMADEVI, Coordinator, BIF Programme, Department of Marine Living Resources, Andhra University, Visakhapatnam-530 003, Andhra Pradesh, on or before 15th July, 2016. </p>

<p>Candidates are required to appear for an interview, with all the necessary certificates in original along with a set of attested copies in the office of the Principal, AU College of Science &amp; Technology, Andhra University, Visakhapatnam. Applications may be sent by Email to andhrauniv.btisnet@nic.in / katruumadevi@gmail.com.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27967/linux-command-line-exercises-for-ngs-data-processing</guid>
	<pubDate>Wed, 22 Jun 2016 07:59:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27967/linux-command-line-exercises-for-ngs-data-processing</link>
	<title><![CDATA[Linux command line exercises for NGS data processing]]></title>
	<description><![CDATA[<p>The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. Copy the required files to your current directory, change directory (<code>cd</code>) to the <code>linuxTutorial</code> folder, and do all the processing inside:</p>
<pre><span>[uzi@quince-srv2 ~/]$</span> cp -r /home/opt/MScBioinformatics/linuxTutorial .
<span>[uzi@quince-srv2 ~/]$</span> cd linuxTutorial
<span>[uzi@quince-srv2 ~/linuxTutorial]$</span>
</pre>
<p>I have deliberately chosen <code>Awk</code> in the exercises as it is a language in itself and is used more often to manipulate NGS data as compared to the other command line tools such as <code>grep</code>, <code>sed</code>, <code>perl</code> etc. Furthermore, having a command on <code>awk</code> will make it easier to understand advanced tutorials such as <a href="http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/Illumina_workflow.html">Illumina Amplicons Processing Workflow</a>. <br><br> In <code>Linux</code>, we use a shell that is a program that takes your commands from the keyboard and gives them to the operating system. Most Linux systems utilize Bourne Again SHell (<code>bash</code>), but there are several additional shell programs on a typical Linux system such as <code>ksh</code>, <code>tcsh</code>, and <code>zsh</code>. To see which shell you are using, type</p>
<pre><span>[uzi@quince-srv2 ~/linuxTutorial]$</span> echo $SHELL

<span>/bin/bash
</span></pre><p>Address of the bookmark: <a href="http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/linux.html" rel="nofollow">http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/linux.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/28168/sam-flags</guid>
	<pubDate>Wed, 29 Jun 2016 15:38:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/28168/sam-flags</link>
	<title><![CDATA[SAM flags]]></title>
	<description><![CDATA[<p>Decoding SAM flags</p>
<p>This utility makes it easy to identify what are the properties of a read based on its SAM flag value, or conversely, to find what the SAM Flag value would be for a given combination of properties.</p>
<p>To decode a given SAM flag value, just enter the number in the field below. The encoded properties will be listed under Summary below, to the right.</p><p>Address of the bookmark: <a href="https://broadinstitute.github.io/picard/explain-flags.html" rel="nofollow">https://broadinstitute.github.io/picard/explain-flags.html</a></p>]]></description>
	<dc:creator>Poonam Mahapatra</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28272/bioinformatics-openings-at-icgeb-new-delhi-india</guid>
  <pubDate>Mon, 04 Jul 2016 01:04:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics openings at ICGEB NEW DELHI, INDIA]]></title>
  <description><![CDATA[
<p>Applications are invited for:</p>

<p>ICGEB NEW DELHI, INDIA</p>

<p>Biotechnology research positions</p>

<p>Projects include:</p>

<p>a) protein structure determination<br />b) malaria parasite biology<br />c) genomics and metagenomics<br />d) molecular and cellular biology<br />e) bioinformatics and computational biology</p>

<p>Minimum eligibility for students who have already obtained a MSc:</p>

<p>1) INSPIRE award for PhD<br />2) SPM award for PhD<br />3) CSIR/DBT/DST JRF for PhD</p>

<p>Applicants should submit their curriculum vitae by email to: sb.icgeb@gmail.com by 30 August 2016</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/28415/scarpa</guid>
	<pubDate>Wed, 13 Jul 2016 07:59:25 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/28415/scarpa</link>
	<title><![CDATA[Scarpa]]></title>
	<description><![CDATA[<p><strong>Scarpa</strong>&nbsp;is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other features include support for multiple libraries and an option to estimate insert size distributions from data. Scarpa is available free of charge for academic and commercial use under the GNU General Public License (GPL).</p>
<p>See the&nbsp;<a href="http://compbio.cs.toronto.edu/hapsembler/hapsembler-2.21_manual.pdf">user manual</a>&nbsp;or the&nbsp;<a href="http://compbio.cs.toronto.edu/hapsembler/scarpa_paper.pdf">paper</a>&nbsp;for more information about Scarpa. Click&nbsp;<a href="http://compbio.cs.toronto.edu/hapsembler/ScarpaSupplementary.pdf">here</a>&nbsp;for the supplementary material.</p><p>Address of the bookmark: <a href="http://compbio.cs.toronto.edu/hapsembler/scarpa.html" rel="nofollow">http://compbio.cs.toronto.edu/hapsembler/scarpa.html</a></p>]]></description>
	<dc:creator>Poonam Mahapatra</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/28449/aravind-j-shankar-gets-all-india-rank-1-in-binc-2016</guid>
	<pubDate>Tue, 19 Jul 2016 05:19:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/28449/aravind-j-shankar-gets-all-india-rank-1-in-binc-2016</link>
	<title><![CDATA[Aravind J Shankar gets all India rank 1 in BINC, 2016]]></title>
	<description><![CDATA[<p>Aravind J Shankar, a bioinformatics graduate of SASTRA University, has secured the all India rank 1 in the Bioinformatics National Certification (BINC) 2016, organised by the Department of Biotechnology, Government of India.</p><p>The BINC is a nationwide examination aimed at certifying professionals in bioinformatics and tests their theoretical and practical knowledge across three phases of examination. He is entitled to receive a DBT research fellowship leading to a Ph.D. from any premier research institute in India.</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/28564/dbt-%E2%80%93-bioinformatics-industrial-training-programme-biitp-2016-%E2%80%93-17</guid>
	<pubDate>Wed, 27 Jul 2016 04:09:59 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/28564/dbt-%E2%80%93-bioinformatics-industrial-training-programme-biitp-2016-%E2%80%93-17</link>
	<title><![CDATA[DBT – Bioinformatics Industrial Training Programme (BIITP) 2016 – 17]]></title>
	<description><![CDATA[<p>BIITP is a programme of Department of Biotechnology (DBT), Ministry of Science and Technology, Government of India, managed by Biotech Consortium India Limited (BCIL).The objective of BIITP is to provide an opportunity to bioinformatics students to acquire practical skills and experience by working on projects alongside industry experts as well as to provide an opportunity for the industry to identify potential employees.</p><p><strong>DBT Invites online applications from the bioinformatics&nbsp;students and requisitions from biotech/bioinformatics companies.</strong></p><p><strong>Biotech Industry</strong>&nbsp;:</p><p>Biotech/Bioinformatics companies interested to provide hands on industrial training to the students of Bioinformatics under BIITP may apply online. The companies would have no obligation towards any payments to trainees. The companies would be paid bench fee to cover expenses towards training. Trainees would be provided to companies subject to availability.</p><p><strong>Attn: Bioinformatics Students</strong></p><p>Bioinformatics students interested in training in biotech / bioinformatics companies may apply online.&nbsp;<strong>Stipend of Rs. 10,000/- per month</strong>&nbsp;will be paid to candidates placed for training. The candidates will be selected for training through an interview.</p><p><strong>Eligiblity</strong>&nbsp;:</p><p>a) B.E /B.Tech./M.Sc./M.Tech./Advanced Post Graduate Diploma in Bioinformatics from an Indian recognized university with minimum 55% marks or equivalent grade at highest degree/diploma completed in the year 2015 or 2016 are only eligible to apply.</p><p>b) The Advanced Post Graduate diploma should be of at least one year duration after graduation.</p><p>c)&nbsp; Students whose result of last semester/final year is not declared can also apply mentioning their marks upto the semester/year upto which result declared. The final result with original mark sheet(s) of all the semesters/years will have to be produced at the time of interview.</p><p><strong>Application Procedure</strong>&nbsp;:</p><p>The online application form is available below :</p><p><strong><a href="https://www.biotecnika.org/2016/07/dbt-bioinformatics-industrial-training-programme-biitp-2016-17/?xurl=%3A%2F%2Fwww.bcil.nic.in%2Fbiitp2016-17%2Fregistration1.asp" target="_blank">Application Form For Students (New User)</a></strong></p><p><strong><a href="https://www.biotecnika.org/2016/07/dbt-bioinformatics-industrial-training-programme-biitp-2016-17/?xurl=%3A%2F%2Fwww.bcil.nic.in%2Fbiitp2016-17%2Fregistration.asp%3FT1%3DCompany" target="_blank">Requisition form for companies (New User)</a></strong></p><p><strong><a href="https://www.biotecnika.org/2016/07/dbt-bioinformatics-industrial-training-programme-biitp-2016-17/?xurl=%3A%2F%2Fwww.bcil.nic.in%2Fbiitp2016-17%2Findex1.asp" target="_blank">Already registered User Click Here</a></strong></p><p>The following documents are to be sent to Mr. Manoj Gupta, Manager, Biotech Consortium India Limited, 5th floor, Anuvrat Bhawan, 210, Deen Dayal UpadhyayaMarg, New Delhi-110002.</p><p>More at&nbsp;http://www.bcil.nic.in/biitp2016-17/index.asp</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28592/bioinformatics-technical-position-at-cdac-pune-india</guid>
  <pubDate>Mon, 01 Aug 2016 03:36:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Technical Position at CDAC Pune - India]]></title>
  <description><![CDATA[
<p>CDAC Pune Recruitment 2016 – Apply Online for Technical Positions: Department of Information Technology under the Ministry of Communications and Information Technology, Government of India, Centre for Development of Advanced Computing (C-DAC), Pune has advertised notification for the recruitment of Technical vacancies for for PwD candidates n direct recruitment basis. Eligible candidates can apply Online from 27-07-2016 at 10.00 AM to 31-08-2016 at 18.00 PM.. Other information like age limit, educational qualification, selection process &amp; how to apply are given below… </p>

<p>CDAC Pune Vacancy Details:<br />Total No. of Posts: 23 </p>

<p>Name of the Post: Technical </p>

<p>Name of the Discipline:<br />A. Computer Science/ Information Technology and Allied disciplines. </p>

<p>B.Electronics Communications/ Electrical/ Telecommunication/Instrumentation &amp; Control/ Medical Electronics/ Power Electronics/ VLSI &amp; Embedded System and Allied disciplines. </p>

<p>C.Biotechnology/ Bioinformatics/ Health informatics/ Geoinformatics/ Meteorology/ Environmental Science/ Ocean Sciences/Oceanography/Environmental Engineering </p>

<p>1. Visually Impaired: 09 Posts </p>

<p>2. Hearing Impaired: 08 Posts </p>

<p>3. Orthopedically Impaired: 06 Posts </p>

<p>Educational Qualification : Candidates should possess Graduation in relvany discpline with relevant experience. </p>

<p>Selection Process: Candidates will be selected based on applicants performance in interview. </p>

<p>How to Apply: Eligible candidates can apply online through the website www.cdac.in from 27-07-2016 at 10.00 AM to 31-08-2016 at 18.00 PM. </p>

<p>More at http://www.cdac.in/index.aspx?id=current_jobs</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28819/research-project-at-iit-madras</guid>
  <pubDate>Wed, 17 Aug 2016 03:26:06 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Project at IIT, Madras]]></title>
  <description><![CDATA[
<p>Two project positions are available to work on (i) molecular modeling and molecular dynamics simulations and (ii) development of bioinformatics databases and tools at Protein Bioinformatics Lab, Department of Biotechnology, IIT Madras.</p>

<p>Duration : Initially for a period of one year. Extendable based on the performance.</p>

<p>Qualification: (i) MSc in Bioinformatics, Biotechnology, Physics, Biophysics, Biochemistry,Computer Science with NET (UGC/CSIR/GATE/BINC/INSPIRE etc) qualification. (OR) (ii) M. Tech in Bioinformatics, Biotechnology</p>

<p>Additional qualification: Programming skills</p>

<p>Candidates who fulfill the requirements of IIT have the possibility to register for PhD.</p>

<p>Fellowship: Rs.25,000 and HRA.</p>

<p>Applicants are encouraged to send the CV to the coordinator by postal mail and e-mail. The deadline to receive the applications is 31st August 2016. The project coordinator has the discretion to restrict the number of candidates to be called for interview to a reasonable limit on the basis of qualifications and experience higher than the minimum prescribed in the announcement.</p>

<p>Project Co-ordinator:</p>

<p>Dr. M. Michael Gromiha <br />Department of Biotechnology <br />Indian Institute of Technology Madras <br />Chennai 600036 <br />Email: gromiha@iitm.ac.in</p>
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