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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30831?offset=870</link>
	<atom:link href="https://bioinformaticsonline.com/related/30831?offset=870" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/843/structural-polymorphism-analysis-from-ngs-data</guid>
  <pubDate>Sat, 13 Jul 2013 17:12:47 -0500</pubDate>
  <link></link>
  <title><![CDATA[Structural polymorphism analysis from NGS data]]></title>
  <description><![CDATA[
<p>The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the context of a flagship project aiming at understanding and improving the adaptive capacity of agroecosystems it will be critical to establish a link between sequence variation, functional variation, gene/protein expression and phenotypic adaptation.</p>

<p>The successful candidate will be in charge of the detection of polymorphisms including structural variants, of the comparison of multiple and diverse genomes of a same species and of the construction of pan- and core-genomes. These challenging tasks will require bioinformatics developments and implementation of methods for accommodating the high level of repetitiveness of complex genomes. The tools will be integrated into pipelines and made available to end-users through the Galaxy platform. The bioinformatician will therefore also have to provide researchers with advices on their experimental designs in order to ensure compliance of produced datasets with pipelines requirements. He/she will be hosted by a bioinformatics/informatics team (7 people) (http://moulon.inra.fr/index.php/fr/equipestransversales/atelier-de-bioinformatique) which has computational facilities and expertise in NGS data analysis, and will benefit as well from national and international collaborative networks (Aplibio http://www.renabi.fr/platforms/aplibio/, Transplant http://transplantdb.eu, AMAIZING http://www.amaizing.fr/).</p>

<p>The position requires a doctoral degree (PhD) in bioinformatics with strong expertise in script writing (Python/Perl) and pipeline development. </p>

<p>Applicants should send a CV and the names of 2 referees willing to provide a letter of recommendation to joets@moulon.inra.fr.</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32481/sspace</guid>
	<pubDate>Fri, 05 May 2017 05:42:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32481/sspace</link>
	<title><![CDATA[SSPACE]]></title>
	<description><![CDATA[<p>SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the scaffolding process. By using the distance information of paired-end and/or matepair data, SSPACE is able to assess the order, distance and orientation of your contigs and combine them into scaffolds. Currently we offer this as a command-line tool in Perl. The input data is given by pre-assembled contig sequences (FASTA) and NGS paired-read data (Illumina/454/Solid FASTA or FASTQ). The final scaffolds are provided in FASTA format.</p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="https://www.baseclear.com/genomics/bioinformatics/basetools/SSPACE" rel="nofollow">https://www.baseclear.com/genomics/bioinformatics/basetools/SSPACE</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/862/dumontier-lab</guid>
  <pubDate>Sun, 14 Jul 2013 12:51:42 -0500</pubDate>
  <link></link>
  <title><![CDATA[Dumontier Lab]]></title>
  <description><![CDATA[
<p>Our research aims to better understand how living systems respond to chemical agents. A key aspect of our approach involves using computational frameworks that are powered by formal (i.e. machine understandable) semantics to make effectively use of vast and diverse amounts of biomedical knowledge. We are particularly interested in understanding how the response to chemical exposure is modulated by genetic and physiological variation among individuals and how this translates into altered capabilities at the molecular level.</p>

<p>Research Area</p>

<p>the discovery and on-demand use of biomedical data and services<br />the formulation, discovery and evaluation of scientific hypotheses<br />the simulation of biological systems at the level of individual molecules</p>

<p>Link @ http://dumontierlab.com/</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/32587/ten-international-scholarships-for-indian-biotechnology-and-bioinformatics-students</guid>
	<pubDate>Wed, 10 May 2017 04:51:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/32587/ten-international-scholarships-for-indian-biotechnology-and-bioinformatics-students</link>
	<title><![CDATA[Ten International Scholarships for Indian Biotechnology and Bioinformatics Students]]></title>
	<description><![CDATA[<p>Wherever you go around the world, Indian students are in demand. With countries such as Canada and Australia providing huge incentives to Indian students to lure them to their shores, there are many institutions around the world that offer scholarships exclusively to Indian students. Historically these scholarships tend to be aimed towards Masters and PhD programmes however on the rise are scholarships for undergraduate students. Student World Online takes a look at ten international scholarships for Indian undergraduate students abroad.</p><p><br /><span><strong>1.&nbsp;</strong></span><strong><a href="http://admissions.cornell.edu/apply/international-students/tata-scholarship"><span>TATA SCHOLARSHIP</span></a></strong>&nbsp;- Cornell University, New York State, USA<br />Tata, the Indian multinational conglomerate company, have a foundation known as the Tata Education &amp; Development Trust which has&nbsp;<span style="text-decoration: underline;"><a href="http://www.news.cornell.edu/stories/2008/10/tata-trust-gives-50-million-endowment-cornell" target="_blank">endowed a multi million dollar sum to Cornell University</a></span>&nbsp;to provide undergraduate scholarships to 20 Indian students every year. &nbsp;In another example of supporting American universities, the Tata group also pledged US$50 million to Harvard University in recent years, whose executive management programme&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Ratan_Tata" target="_blank">Ratan Tata</a></span>&nbsp;attended in the 1970s. &nbsp;<a href="http://admissions.cornell.edu/apply/international-students/tata-scholarship" target="_blank"><span><span style="text-decoration: underline;">Read more...&nbsp;</span></span></a>&nbsp;<br /><br /><strong><span>2.</span></strong>&nbsp;<a href="http://www.uow.edu.au/future/international/apply/scholarships/UOW135799.html" target="_blank"><strong><span>BRADMAN FOUNDATION SCHOLARSHIP</span></strong></a>&nbsp;- University of Wollongong, Australia.<br />Named after Australia's cricket legend&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Donald_Bradman" target="_blank">Donald Bradman</a></span>, the&nbsp;<span style="text-decoration: underline;"><a href="https://www.uow.edu.au/content/groups/public/@web/@unia/documents/doc/uow145334.pdf" target="_blank">UOW Bradman Foundation Scholarship</a></span>&nbsp;was launched in 2012, with the help of Adam Gilchrist no less, to offer one successful Indian student each year a 50% reduction in tuition fees. &nbsp;<a href="http://www.uow.edu.au/future/international/apply/scholarships/UOW135799.html" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a>&nbsp;&nbsp;</p><p><span><strong>3.&nbsp;</strong></span><strong><a href="http://www.huaweischolarships.org/about_scholar.aspx" target="_blank"><span>HUAWEI MAITREE SCHOLARSHIPS</span></a></strong>&nbsp;- Various Universities, China<br />Along with Tata, Huawei are the other huge corporation to be featured. &nbsp;China's massive telecoms equipment vendor are involved in these scholarships offered to Indian students studying in China. &nbsp;In 2013 there are 10 generous scholarships available which provide full tuition fees and living expenses. &nbsp;The courses on which the scholarships are offered include Science and Technology courses, Social Sciences and Culture and Development courses. &nbsp;<a href="http://www.huaweischolarships.org/about_scholar.aspx" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>4.&nbsp;</strong></span><strong><a href="http://www.britishcouncil.in/study-uk/dr-manmohan-singh-scholarships-2013" target="_blank"><span>DR. MANMOHAN SINGH SCHOLARSHIPS</span></a></strong>&nbsp;- Cambridge University, England, UK<br />These scholarships have been designed to help budding Indian minds follow in the footsteps of&nbsp;<span style="text-decoration: underline;"><a href="http://pmindia.nic.in/" target="_blank">Indian prime minister Manmohan Singh</a></span>&nbsp;by studying at the prestigious Cambridge University. &nbsp;The scholarships can be applied to any undergarduate course (with the two exceptions of medicine and veterinary science) and cover everything, i.e. tuition and college fees, living expenses and an additional grant to go towards travel expenses. &nbsp;<a href="http://www.britishcouncil.in/study-uk/dr-manmohan-singh-scholarships-2013" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>5.&nbsp;</strong></span><strong><a href="http://www.oxbridgeindia.com/scholarship.php"><span>OXFORD AND CAMBRIDGE SOCIETY OF INDIA</span></a></strong>&nbsp;- Oxford &amp; Cambridge Universities, England, UK<br />As the name might suggest, these are scholarships available for students wishing to study at Oxford or Cambridge (cleverly known together as&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Oxbridge" target="_blank">Oxbridge</a></span>). &nbsp;It is only available for applicants who are completing or have completed a degree at an Indian university, however these scholarships are for both undergraduate and graduate students.&nbsp;&nbsp;<a href="http://www.oxbridgeindia.com/scholarship.php" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>6.&nbsp;</strong></span><strong><a href="http://www.napier.ac.uk/study/international/funding/Pages/india-scholarships.aspx" target="_blank"><span>EDINBURGH NAPIER UNIVERSITY</span></a></strong>&nbsp;- Scotland, UK<br />This one applies to all countries in the Indian subcontinent and is for both undergraduate and graduate courses. Edinburgh Napier University offers a merit based discount of &pound;2,000 Pounds. &nbsp;<a href="http://www.napier.ac.uk/study/international/funding/Pages/india-scholarships.aspx" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>7.&nbsp;</strong></span><strong><a href="http://www.sheffield.ac.uk/international/countries/asia/south-asia/india/scholarships" target="_blank"><span>SHEFFIELD UNIVERSITY</span></a></strong>&nbsp;- Sheffield, UK<br />Provides merit-based scholarships for undergraduate and graduate programmes across all subjects<span>.</span>&nbsp;<a href="http://www.sheffield.ac.uk/international/countries/asia/south-asia/india/scholarships" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>8.&nbsp;</strong></span><strong><a href="http://www.india4eu.eu/scholarships" target="_blank"><span>INDIA 4EU II</span></a></strong>&nbsp;- Several Universities across Europe<br />Pioneered by the European Union and involving partner universities in France, Finland, Germany, Italy, Portugal, Spain and Sweden,&nbsp;<span style="text-decoration: underline;"><a href="http://www.india4eu.eu/" target="_blank">the India 4EU II initiative</a></span>&nbsp;is aimed at encouraging Indian students to study, work and live in Europe. &nbsp;The initiative is well funded and allows the successful students tuition fees, expenses for living and travel costs as well as insurance during their time at one of the partner universities. &nbsp;<a href="http://www.india4eu.eu/scholarships" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>9.&nbsp;</strong></span><strong><a href="http://www.tcd.ie/international/Indian%20Scholarship.php" target="_blank"><span>TRINITY COLLEGE DUBLIN</span></a></strong>&nbsp;- Ireland<br />Valid for undergraduate courses in the faculties of Arts, Humanities, Social Sciences, Science, Computer Science or Engineering, the Trinity College Dublin offers Indian students scholarships to the tune of&nbsp;&euro;9,000 per annum over a year degree course. &nbsp;<a href="http://www.tcd.ie/international/Indian%20Scholarship.php" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>10.&nbsp;</strong></span><strong><a href="http://www.indianexpress.com/news/university-college-dublin-announces--euro-250000-scholarship-for-indian-students/1094390/" target="_blank"><span>UNIVERSITY COLLEGE DUBLIN</span></a></strong>&nbsp;- Ireland<br />Another of Ireland and Dublin's finest, the UCD awards one Global Excellence Undergraduate Scholarship which provides the worthy student a substantial 50% towards their tuition fees and is valid for all courses save medicine, radiography and veterinary medicine. &nbsp;UCD also offers a Global Undergraduate Scholarship scheme for undergrads accepted on science, social sciences, arts and business courses. &nbsp;This is all thanks to a &euro;250,000 fund that will allow for 57 Indian students to benefit from scholarships at UCD. &nbsp;<a href="http://www.indianexpress.com/news/university-college-dublin-announces--euro-250000-scholarship-for-indian-students/1094390/"><span><span style="text-decoration: underline;">Read more...</span></span></a></p>]]></description>
	<dc:creator>Priya Singh</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/2002/ibl-laboratory</guid>
  <pubDate>Mon, 12 Aug 2013 02:02:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[IBL laboratory]]></title>
  <description><![CDATA[
<p>The IBL laboratory focuses on the multi-disciplinary analyses of the global responses of model microorganisms, cyanobacteria (mainly Synechocystis PCC6803) and yeasts (mainly Saccharomyces cerevisae) to environmental stresses triggered by oxidative agents, heavy metals, or drastic changes in nutrients availability. The genome-wide responses studied with the "omics" techniques (transcriptomics, proteomics, metabolomics and genetics) generate a wealth of experimental data, which are processed, archived, integrated and represented as working models through bioinformatics and mathematics. </p>

<p>Link : http://www-dsv.cea.fr/en/instituts/institut-de-biologie-et-de-technologies-de-saclay-ibitec-s/unites-de-recherche/service-de-biologie-integrative-et-genetique-moleculaire-sbigem/laboratoire-de-biologie-integrative-lbi/presentation__1</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/32716/jrfsrf-project-assistant-ii-recruitment-in-national-agri-food-biotechnology-institute-nabi</guid>
  <pubDate>Mon, 15 May 2017 05:37:52 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF/SRF / Project Assistant-II recruitment in National Agri-Food Biotechnology Institute (NABI)]]></title>
  <description><![CDATA[
<p>National Agri-Food Biotechnology Institute<br />ADVT. No: 2017-Researcher (02)</p>

<p>JRF/SRF / Project Assistant-II recruitment in National Agri-Food Biotechnology Institute (NABI)</p>

<p>Essential Qualification: According to the DST (DST OM No.SR/S9/Z-09/2012 dated 21.10.2014) Post Graduate degree in basic science(M.Sc) in Bioinformatics/Computational Biology/Systems Biology/Information Technology with NET or Graduate degree in professional course with NET or Post Graduate Degree (M.Tech) in professional course in Bioinformatics/Computational Biology/Systems Biology/Information Technology. Desirable qualification/skills: 1) Should be proficient in programming in Perl/Python/R language etc. 2) Should have knowledge and skills for data mining in biological sequence database . sequence analysis tools/packages, NGS Analysis . 3) Should have knowledge and skills to work in linux environment and write shell scripts.</p>

<p>Age : 28 years</p>

<p>Hiring Process : Written-test<br />Job Role : Research/JRF/SRF<br />How to apply</p>

<p>Application should be sent to Administrative officer, National Agri-Food Biotechnology Institute, Knowledge City, Sector-81, Mohali so as to reach latest by 30.05.2017 before 5:30 pm.</p>

<p>More at http://www.nabi.res.in/Vacancies/NABI/ResearchFellowships/JRFSRFRA/2017/ADVT.%20No%202017Researcher%20(02)/ApplicationForm.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/868/the-upton-vbrc-lab</guid>
  <pubDate>Sun, 14 Jul 2013 13:25:41 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Upton (VBRC) lab]]></title>
  <description><![CDATA[
<p>This Bioinformatics Resource (Virology.ca, the Canadian half of the now defunct VBRC)  focuses on large DNA viruses:<br />Poxviruses<br />African Swine Fever Viruses<br />Iridoviruses<br />Baculoviruses</p>

<p>Research Area</p>

<p>Custom searches of the viral databases<br />Building new tools .<br />The genome annotation<br /> <br />Link @ http://athena.bioc.uvic.ca/</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/32822/phd-positions-in-genova-at-dibris-univ-of-genoa-italy</guid>
  <pubDate>Thu, 18 May 2017 00:04:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[PhD positions in Genova at DIBRIS - Univ. of Genoa, Italy]]></title>
  <description><![CDATA[
<p>PhD positions in Genova at DIBRIS - Univ. of Genoa (Italy)</p>

<p>http://www.disi.unige.it/person/MasulliF/ricerca/PhDinGenova2017.html</p>

<p>The call for some funded positions for  the 3 years PhD studies  at the Department of Informatics, Bioengineering, Robotics and System Engineering (DIBRIS) in Genova is available at</p>

<p>http://www.studenti.unige.it/postlaurea/dottorati/XXXIII/ENG/</p>

<p>The deadline for applications is June13, 2017 and the PhD courses and fellowships should start on Nov 2017.</p>

<p>Details for the application to the  PhD Program in Computer Science and Systems Engineering (CODICE 6608) are at http://phd.dibris.unige.it/csse/index.php/how-to-apply</p>

<p>The research activity of my research group is focused on Computational Intelligence, Machine Learning, Bioinformatics, Systems Biology, and Positive Technology as described at http://www.disi.unige.it/person/MasulliF/ricerca/index.html</p>

<p>The research themes proposed by me and Prof. Stefano Rovetta are:</p>

<p>- Computational Intelligence and Machine Learning (see http://www.disi.unige.it/person/MasulliF/ricerca/Phd2017-T1.html)</p>

<p>- Computational Intelligence and Health and Wellbeing Support( see http://www.disi.unige.it/person/MasulliF/ricerca/Phd2017-T3.html)</p>

<p>You can also propose a different research theme belonging to the research activity of my group.</p>

<p>Looking for self-motivated PhD candidates, interested to the mathematical aspects of their research and to the development of new algorithms for intelligent data analysis, and skilled in programming and   in  thorough experimental data analysis. They will be part of my research group and will collaborate to our research projects and publications.</p>

<p>Italian and international students interested to work are invited  to send their cv  and the name/email-addresses of 3 referees to my email address francesco.masulli@unige.it A.S.A.P.</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/914/welch-lab</guid>
  <pubDate>Mon, 15 Jul 2013 18:21:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[Welch Lab]]></title>
  <description><![CDATA[
<p>They are based in the Department of Genetics at the University of Cambridge. </p>

<p>The research covers diverse areas of evolutionary biology, and molecular evolution in particular. It combines theoretical and empirical approaches, and particularly evolutionary inference from genome sequence data.</p>

<p>Links @ http://www.gen.cam.ac.uk/research/welch/GroupPage/Home.html</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/33966/ra-bioinformatics-at-national-institute-of-biomedical-genomics-india</guid>
  <pubDate>Wed, 26 Jul 2017 03:49:52 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS,  INDIA]]></title>
  <description><![CDATA[
<p>NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS<br />(An Autonomous Institution of the Government of India) <br />P.O.: N.S.S., Kalyani 741251, West Bengal</p>

<p>Advertisement No. 137/ESTB/NIBMG/17-18 </p>

<p>Position available Project Description: Several positions are available for the project titled: “A unified web-portal for analysis, integration and visualization of multi-omics data”. The goal of this project is to develop a user-accessible resource for integrated analysis and visualization of multi-OMICs data sets (including gene expression, genotype, methylation, microRNA, etc.). Data sets generated on various platforms shall be maintained in a stable database, accessed through standard querying mechanisms, and the results shall be displayed via user-friendly interface. The analysis engine shall run on open-source software (such as R/Bioconductor) developed in-house. All positions are contractual. </p>

<p>Appointment will be initially given for a period of one year which is extendable depending upon performance, availability of funds and requirements of the institute. </p>

<p>Project Code: 20275 Position: (No. of positions available) </p>

<p>Research Associate (3)</p>

<p>Position 1: Ph.D. or equivalent in statistics, computer science, mathematics, bioinformatics, or related subject. <br />Position 1: Those with experience in database management shall be preferred. Experience with UNIX or GNU/Linux operating system. <br />Position 1: Creation and maintenance of a database for population- and diseaseassociated variation resource. Development of programmatic interface for querying the database, filtering of the results and identification of genes of interest. </p>

<p>Rs. 36000/- + 10% HRA </p>

<p>Please apply online via web link http://apply.nibmg.ac.in/ (no other form of application will be accepted). The last date of application is 14-08-2017. All letters to attend screening test and /or interview will be sent only to the short-listed candidates by Email only. No correspondence will be made with applicants who are not shortlisted /not called for screening test and /or interview. No TA/DA will be paid for attending the screening test and /or interview.<br />Detail information at http://www.nibmg.ac.in/academic/Advt_20275.pdf</p>

<p>More Info: http://www.nibmg.ac.in/?q=Project%20Linked%20Personnel</p>
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