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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30833?offset=430</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/3917/the-story-of-you-encode-and-the-human-genome</guid>
	<pubDate>Sat, 24 Aug 2013 18:49:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/3917/the-story-of-you-encode-and-the-human-genome</link>
	<title><![CDATA[The Story of You: ENCODE and the human genome]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/TwXXgEz9o4w" frameborder="0" allowfullscreen></iframe><p>Ever since a monk called Mendel started breeding pea plants we've been learning about our genomes. In 1953, Watson, Crick and Franklin described the structure of the molecule that makes up our genomes: the DNA double helix. Then, in 2001, scientists wrote down the entire 3-billion letter code contained in the average human genome. Now they're trying to interpret that code; to work out how it's used to make different types of cells and different people. The ENCODE project, as it's called, is the latest chapter in the story of you. To read the ENCODE research papers and more, visit http://www.nature.com/ENCODE</p>]]></description>
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/5574/srfjrfra-university-of-hyderabad</guid>
  <pubDate>Mon, 14 Oct 2013 07:49:11 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF/JRF/RA @ UNIVERSITY OF HYDERABAD]]></title>
  <description><![CDATA[
<p>SCHOOL OF CHEMISTRY, UNIVERSITY OF HYDERABAD</p>

<p>Applications on plain paper along with details of CV (relevant photocopies of their<br />qualifications/experience and reprints of published work to be attached) are invited from qualified candidates for Research Fellowship in CSIR- sponsored research project.</p>

<p>JRF/SRF/RA (one vacancy)</p>

<p>CSIR sponsored “In silico design, identification and in vitro validation of lead molecule inhibitors to Bcr-Abl kinase”</p>

<p>JRF: M.Sc in Chemistry/ Bioinformatics/ Biotechnology with I division and NET or GATE qualified</p>

<p>SRF: M.Sc in chemistry/ Bioinformatics/ Biotechnology with at least two years of post- M.Sc research experience as evidenced from published papers in standard refereed journals in relevant area</p>

<p>RA: PhD in chemistry/ Bioinformatics/ Biotechnology with research experience in<br />relevant area.</p>

<p>As per CSIR guidelines</p>

<p>Notes:<br />1) You may visit the University of Hyderabad website www.uohyd.ernet.in to learn more about the University of Hyderabad.<br />2) Applicants should note that the appointment to be made is purely temporary and there is no right for claiming for any regular appointment in the University.<br />3) No TA/DA will be paid for attending the interview or at the time of joining the post, if selected.<br />4) The application should be submitted by post/courier/in-person to the address given below on or before November 1st 2013.</p>

<p>Prof. Lalitha Guruprasad<br />W-103, Gurbakhsh Singh Building<br />School of Chemistry<br />University of Hyderabad<br />Hyderabad- 500 046<br />5) Short-listed candidates will be called for interview at a short notice.</p>

<p>Advertisement: http://www.uohyd.ac.in/images/recruitment/chemisry_advt_101013.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/4761/dna-is-packaged-in-a-chromosome-experiment</guid>
	<pubDate>Mon, 23 Sep 2013 18:01:12 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/4761/dna-is-packaged-in-a-chromosome-experiment</link>
	<title><![CDATA[DNA is packaged in a chromosome experiment]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/fecfROFrp_c" frameborder="0" allowfullscreen></iframe>For more information, log on to-
http://shomusbiology.weebly.com/
Download the study materials here-
http://shomusbiology.weebly.com/bio-materials.html
A nucleosome is the basic unit of DNA packaging in eukaryotes, consisting of a segment of DNA wound in sequence around four histone protein cores.[1] This structure is often compared to thread wrapped around a spool.[2]

Nucleosomes form the fundamental repeating units of eukaryotic chromatin,[3] which is used to pack the large eukaryotic genomes into the nucleus while still ensuring appropriate access to it (in mammalian cells approximately 2 m of linear DNA have to be packed into a nucleus of roughly 10 µm diameter). Nucleosomes are folded through a series of successively higher order structures to eventually form a chromosome; this both compacts DNA and creates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to carry epigenetically inherited information in the form of covalent modifications of their core histones. Nucleosomes were observed as particles in the electron microscope by Don and Ada Olins [4] and their existence and structure (as histone octamers surrounded by approximately 200 base pairs of DNA) were proposed by Roger Kornberg.[5][6] The role of the nucleosome as a general gene repressor was demonstrated by Lorch et al. in vitro [7] and by Han and Grunstein in vivo.]]></description>
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/5702/research-fellow-in-bioinformatics-queens-university-belfast-institute-for-global-food-security-school-of-biological-sciences</guid>
  <pubDate>Thu, 17 Oct 2013 04:33:02 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Fellow in Bioinformatics @  Queen's University Belfast -Institute for Global Food Security, School of Biological Sciences]]></title>
  <description><![CDATA[
<p>Ref: 13/102900</p>

<p>Available immediately until 30th November 2015, to work on the development of bioinformatics approaches to aid analysis of data derived from the metabolomic profiling of biological matrices. The successful applicant will lead research activities on an FP7 funded EU-wide collaborative project aimed at establishing biomarker-based strategies for high throughput diagnostic screening. Key tasks will involve multivariate analysis of large datasets, bioinformatic-based selection and validation of identified markers, construction of metabolomic spectral profile databases and development of machine learning/database searching approaches amenable to analytical screening techniques. This position will offer the opportunity to travel and undertake work with project collaborators based in the Republic of Ireland and Europe.</p>

<p>Informal enquiries may be directed to Dr Terry McGrath, email: terry.mcgrath@qub.ac.uk.</p>

<p>Anticipated interview date: Thursday 31st October 2013<br />Salary scale: £30,424 – £39,649 per annum (including contribution points)<br />Closing date: Monday 21st October 2013  </p>

<p>Telephone (028) 90973044 FAX: (028) 90971040 or e-mail on personnel@qub.ac.uk</p>

<p>The University is committed to equality of opportunity and to selection on merit.  It therefore welcomes applications from all sections of society and particularly welcomes applications from people with a disability. </p>

<p>Fixed term contract posts are available for the stated period in the first instance but in particular circumstances may be renewed or made permanent subject to availability of funding.</p>

<p>More @ https://hrwebapp.qub.ac.uk/tlive_webrecruitment/wrd/run/ETREC107GF.open?VACANCY_ID=5616943npO&amp;WVID=6273090Lgx&amp;LANG=USA</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/5761/how-i-discovered-dna-james-watson</guid>
	<pubDate>Fri, 18 Oct 2013 11:30:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/5761/how-i-discovered-dna-james-watson</link>
	<title><![CDATA[How I discovered DNA - James Watson]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/RvdxGDJogtA" frameborder="0" allowfullscreen></iframe><p>View full lesson: http://ed.ted.com/lessons/james-watson-on-how-he-discovered-dna Nobel laureate James Watson opens TED2005 with the frank and funny story of how he and his research partner, Francis Crick, discovered the structure of DNA. Talk by James Watson.</p>]]></description>
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/5947/jrf-national-jalma-institute-of-leprosy-and-other-mycobacterial-diseases</guid>
  <pubDate>Mon, 28 Oct 2013 10:42:48 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF @ NATIONAL JALMA INSTITUTE OF LEPROSY AND OTHER MYCOBACTERIAL DISEASES]]></title>
  <description><![CDATA[
<p>NATIONAL JALMA INSTITUTE OF LEPROSY AND OTHER MYCOBACTERIAL DISEASES</p>

<p>(INDIAN COUNCIL OF MEDICAL RESEARCH)</p>

<p>P.O BOX 101,<br />Dr. M. Miyazaki Marg,<br />Tajganj, Agra - 282001</p>

<p>Applications are invited for a walk-in interview to be held in the Seminar Hall of the on 15th November, 2013, 9:30 am for temporary positions of JRF, Lab Technician and Field attendant in a ICMR funded project entitled "Elucidating the strain differentiation and transmission dynamics of M. leprae through simple sequence repeats ISSR-PCR marker"</p>

<p>1. JRF (one Post)</p>

<p>    Essential qualification: Candidates with M.Sc/IVI.Tech or equivalent degree in any life science related subjects with UGC-CSIR/ICMR/DBT-Net qualified</p>

<p>    Desirable qualification: Experience in Molecular Biology/Computational Biology will be preferred.</p>

<p>    Age. Maximum 28 years as on 11.11.2013. Age relaxation as per GOI rules.</p>

<p>    Emoluments: Rs. 6,000 + 20% HRA per Month</p>

<p>2. Lab Technician (One Post)</p>

<p>    Essential Qualification: 12th with DMLT/B.SCA4.SC in Life sciences</p>

<p>    Desirable qualification: Experience in Molecular Biology/Computational Biology will be preferred.</p>

<p>    Age: Maximum 30 years as on 11.11.2013. Age relaxation as per GOI rules.</p>

<p>    Emoluments: Rs13,760/ Per Month</p>

<p>3. Field Attendant (One Post)</p>

<p>Essential Qualification: 10th Pass</p>

<p>Desirable Qualification: Experience in field work</p>

<p>Age: Maximum 28 years as on 11.11.2013. Age relaxation as per GOI rules.</p>

<p>Emoluments: Rsl2,040l Per Month</p>

<p>Terms: posts are purely temporary. Appointment will be initially made for a period of one (01) year and may be extended further based on the performance of the candidate up to completion of the project.</p>

<p>Application &amp; Selection procedure: candidates have to appear in the walk-in-interview in person along with an application/CV on plain paper giving details of at educational qualificationq experience and submit photocopies of relevant documents at the time of interview. Selection will be based on the performance of the candidate in the interview' Candidates will not be sent any interview call letter separately. No TA/DA will be paid to the candidate for appearing in the interview. selection is not possible without appearing in the interview. All candidates must report by 9:00am on the date of interview. Advance copy of CV may be sent to m.sarathipartha@gmail.com</p>

<p>Advertisement: http://www.jalma-icmr.org.in/P_S_M_advertisment.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/33874/dna-testing-companies-around-the-globe</guid>
	<pubDate>Thu, 13 Jul 2017 04:44:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/33874/dna-testing-companies-around-the-globe</link>
	<title><![CDATA[DNA testing companies around the globe !]]></title>
	<description><![CDATA[<p>It was realized in the 1940s that DNA molecules are passed down through the generations of a family. In 1953 Watson and Crick elucidated the chemical structure of this molecule as a twisted ladder (a &lsquo;helix&rsquo;) made of two strands. DNA occurs in all the cells of our body, it is our blueprint! The strands of DNA contain information in the form of a code, which in turn determines our individual traits and characteristics. This code, the genetic code, is the order of four types of DNA building block. When the two strands of DNA separate, each building block (&lsquo;base&rsquo;) accurately templates a corresponding base on the newly made strand of DNA so that information is not lost but is instead duplicated and preserved.</p><p>Testing for similarities between DNA (deoxyribonucleic acid) samples from two people allows family relationships to be established &ndash; or disproved &ndash; to an extraordinarily high degree of certainty. A common use for a DNA test is to establish if a man is the biological father of a child; this is known as a paternity test. However, there are other uses for the science of DNA testing (also called genotyping), these include forensic analysis of human DNA samples, and tracking relationships amongst domesticated animals.</p><p>The order in which the bases occur in DNA is referred to as the DNA sequence. Each person is unique and just as people differ in their fingerprints, they also have a unique and slightly different DNA sequence. Half of a person&rsquo;s DNA is received from their mother, and half is received from the father. However, while fingerprints have no value for establishing family relationships, the minor variations in DNA sequence are extraordinarily useful for this purpose. All cells of our body contain DNA, skin cells from the lining of the cheek provide a simple and convenient source of material.</p><p>DNA is purified from these cells and the minor variations are read out as a type of bar-code by a machine. When the net DNA &lsquo;barcodes&rsquo; from family members are lined up next to each other it becomes clear when a child is related to biological parents because half the stripes in the bar-code like signature will line up with those of the mother, and half will line up with those of the father. On the other hand, in the absence of a biological relationship, the DNA signatures from a child and from a potential parent are not found to have 50% in common. It may be appreciated that DNA testing is the most convenient and scientifically accurate method of determining relationships between people.</p><p>Following are the list of companies who qssist in DNA testing:</p><h2><span>DNA testing companies</span></h2><ul>
<li><a href="https://isogg.org/wiki/23andMe" title="23andMe">23andMe</a>&nbsp;(admixture, adoption, deep ancestry, genealogy) (health and trait reports also available in some countries)</li>
<li><a href="https://24genetics.com/">24 genetics</a>&nbsp;(admixture, exome sequencing, health, paternity, pharmacogenetics, whole genome sequencing) A company catering for the Spanish market</li>
<li><a href="http://www.africanancestry.com/">African Ancestry</a>&nbsp;(deep ancestry)</li>
<li><a href="http://www.africandna.com/">AfricanDNA</a>&nbsp;(<a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">FTDNA</a>&nbsp;affiliate) (admixture, deep ancestry, genealogy)</li>
<li><a href="https://isogg.org/wiki/AncestrybyDNA" title="AncestrybyDNA">AncestrybyDNA</a>&nbsp;(admixture, deep ancestry)</li>
<li><a href="https://isogg.org/wiki/AncestryDNA" title="AncestryDNA">AncestryDNA</a>, a subsidiary of Ancestry.com (admixture, adoption, genealogy)</li>
<li><a href="https://atlas.ru/">Atlas Biomed</a>&nbsp;(deep ancestry, diet, health and traits, sport) A test catering for the Russian market</li>
<li><a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a>&nbsp;(formerly Ethnoancestry) (admixture, deep ancestry)</li>
<li><a href="https://isogg.org/wiki/Centrillion_Biosciences" title="Centrillion Biosciences">Centrillion Biosciences</a>&nbsp;(aka TribeCode) (admixture, deep ancestry)</li>
<li>CymruDNAWales - see&nbsp;<a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a></li>
<li><a href="https://www.dantelabs.com/">Dante Labs</a>&nbsp;(exome sequencing, health, whole genome sequencing) A test aimed at the European market</li>
<li><a href="http://www.dnaancestry.ae/">DNA Ancestry and Family Origin</a>&nbsp;(<a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">FTDNA</a>&nbsp;affiliate in the Middle East) (admixture, adoption, deep ancestry, full mtDNA sequencing, genealogy)</li>
<li><a href="http://dnaconsultants.com/">DNA Consultants</a>&nbsp;(admixture, deep ancestry)</li>
<li><a href="https://isogg.org/wiki/DNA_Tribes" title="DNA Tribes">DNA Tribes</a>&nbsp;(admixture)</li>
<li><a href="https://www.dna-worldwide.com/">DNA Worldwide</a>&nbsp;(formerly a&nbsp;<a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">FTDNA partner</a>. See also&nbsp;<a href="https://www.livingdna.com/">Living DNA</a>)</li>
<li>Ethnoancestry - see&nbsp;<a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a></li>
<li><a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">Family Tree DNA</a>&nbsp;(admixture, adoption, deep ancestry, full mtDNA sequencing, genealogy, Y chromosome sequencing)</li>
<li><a href="https://isogg.org/wiki/Full_Genomes_Corporation" title="Full Genomes Corporation">Full Genomes Corporation</a>&nbsp;(whole genome sequencing, Y-chromosome sequencing)</li>
<li><a href="https://isogg.org/wiki/Gene_by_Gene" title="Gene by Gene">Gene by Gene</a>&nbsp;- the parent company of&nbsp;<a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">Family Tree DNA</a>&nbsp;which now incorporates the companies previously known as DNA Traits, DNA DTC and DNA Findings (research, health, exome sequencing, whole genome sequencing)</li>
<li><a href="https://isogg.org/wiki/Genebase" title="Genebase">Genebase</a>&nbsp;(deep ancestry, genealogy)</li>
<li><a href="https://www.genotek.ru/">GenoTek</a>&nbsp;(admixture, genealogy, diet and fitness, family planning, health, talents and sports) A company catering for the Russian market</li>
<li><a href="https://isogg.org/wiki/Genographic_Project" title="Genographic Project">Genographic Project</a>&nbsp;(admixture, deep ancestry)</li>
<li><a href="http://www.genos.co/">Genos Research Inc</a>&nbsp;(DTC whole exome sequencing; consumer focused healthcare big data spin out from Complete Genomics; Note: no genetic genealogy focus or tools)</li>
<li><a href="http://www.guardiome.com/">Guardiome</a>&nbsp;(admixture, whole genome sequencing and interpretation)</li>
<li><a href="https://www.helix.com/">Helix</a>&nbsp;(exome sequencing) US supplier of the&nbsp;<a href="https://isogg.org/wiki/Genographic_Project" title="Genographic Project">Genographic Project</a>&nbsp;Geno 2.0 Next Generation test</li>
<li><a href="http://www.igenea.com/">iGENEA</a>&nbsp;(<a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">FTDNA</a>&nbsp;affiliate) (admixture, deep ancestry, genealogy)</li>
<li>IrelandsDNA - See&nbsp;<a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a>&nbsp;(formerly Ethnoancestry)</li>
<li><a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">MyDNA Global</a>&nbsp;- a new name for&nbsp;<a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a></li>
<li><a href="https://www.livingdna.com/">Living DNA</a>&nbsp;(admixture, deep ancestry) See also&nbsp;<a href="https://www.dna-worldwide.com/">DNA Worldwide</a></li>
<li><a href="https://www.myheritage.com/dna">MyHeritage DNA</a>&nbsp;(admixture, genealogy)</li>
<li><a href="https://isogg.org/wiki/Oxford_Ancestors" title="Oxford Ancestors">Oxford Ancestors</a>&nbsp;(deep ancestry)</li>
<li><a href="http://www.rootsforreal.com/">Roots for Real</a>&nbsp;(admixture, deep ancestry)</li>
<li><a href="https://isogg.org/wiki/ScotlandsDNA" title="ScotlandsDNA">ScotlandsDNA</a>&nbsp;- (formerly Ethnoancestry) (admixture, deep ancestry)</li>
<li><a href="https://isogg.org/wiki/Sorenson_Genomics" title="Sorenson Genomics">Sorenson Genomics</a>&nbsp;(laboratory services)</li>
<li><a href="http://www.suregenomics.com/">Sure Genomics</a>&nbsp;(whole genome sequencing and interpretation)</li>
<li>TribeCode See&nbsp;<a href="https://isogg.org/wiki/Centrillion_Biosciences" title="Centrillion Biosciences">Centrillion Biosciences</a></li>
<li><a href="https://www.veritasgenetics.com/">Veritas Genetics</a>&nbsp;(whole genome sequencing and interpretation)</li>
<li><a href="http://xcode.in/">Xcode</a>&nbsp;(Diet and Fitness, Precision medicine, Genotyping, Sequencing, Interpretation)</li>
<li>YorkshiresDNA - See&nbsp;<a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a>&nbsp;(formerly Ethnoancestry)</li>
<li><a href="https://www.wegene.com/">WeGene</a>&nbsp;(admixture, deep ancestry, health, sports, traits) A test tailored for the East Asian market</li>
<li><a href="https://isogg.org/wiki/YSEQ" title="YSEQ">YSEQ</a>&nbsp;(custom Y-SNPs, Y-STRs, SNP panels, whole genome sequencing)</li>
</ul>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/7815/post-doc-in-systems-genetics</guid>
  <pubDate>Wed, 08 Jan 2014 19:23:37 -0600</pubDate>
  <link></link>
  <title><![CDATA[Post-doc in Systems Genetics]]></title>
  <description><![CDATA[
<p>Gagneur lab at Gene Center, Ludwig-Maximilians-Universitaet, Munich, Germany</p>

<p>Deadline for applications : January 15, 2014.</p>

<p>Description :</p>

<p>We seek a talented and motivated post-doc to develop computational methods for inferring the molecular basis of genetic diseases by integration of personal omics data. Research topics include: identifying causal mutations of rare disease patients by meta-analysis; inferring disease-causing molecular pathways from genotype, human phenotypes, and omics profile of patient-derived cell lines; and causal inference from longitudinal omics studies of patients. The developed methods will be applied to analyze data from our medical collaborators.</p>

<p>Candidates must either hold a PhD in computational biology or bioinformatics, or hold a PhD in physics, statistics, or applied mathematics with practical experience with high-dimensional data analysis. Experience in quantitative genetics is a plus. Applicants must have a proven publication record and an interest for translational research.</p>

<p>The Gagneur lab is a young, lively and multidisciplinary group with a research focus on systems genetics and gene regulation. It is located at the Gene Center of the LMU (University of Munich), an interdisciplinary institution whose 16 independent research groups investigate the regulation of gene expression at all levels - from the underlying molecular mechanisms to the biological system. The institute is located on the biomedical research campus Munich-Grosshadern, offering a dynamic, interactive and internationally oriented research environment. The dynamism of Munich and the proximity of the Alps provide an excellent quality of life.</p>

<p>The salary is according to the TV-L (German academic salary scale).<br />Applications including a cover letter, CV, and references must be sent by January 15th 2014 to Julien Gagneur (gagneur@genzentrum.lmu.de)</p>

<p>About the lab: http://www.gagneur.genzentrum.lmu.de</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34867/magic-blast-a-tool-for-mapping-large-next-generation-rna-or-dna-sequencing-runs-against-a-whole-genome-or-transcriptome</guid>
	<pubDate>Tue, 26 Dec 2017 22:23:39 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34867/magic-blast-a-tool-for-mapping-large-next-generation-rna-or-dna-sequencing-runs-against-a-whole-genome-or-transcriptome</link>
	<title><![CDATA[Magic-BLAST: a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome.]]></title>
	<description><![CDATA[<p>Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the candidate introns and adding up the score of all exons. This is very different from other versions of BLAST, where each exon is scored as a separate hit and read-pairing is ignored.</p>
<p>Magic-BLAST incorporates within the NCBI BLAST code framework ideas developed in the NCBI Magic pipeline, in particular hit extensions by local walk and jump&nbsp;<a href="http://www.ncbi.nlm.nih.gov/pubmed/26109056">(http://www.ncbi.nlm.nih.gov/pubmed/26109056)</a>, and recursive clipping of mismatches near the edges of the reads, which avoids accumulating artefactual mismatches near splice sites and is needed to distinguish short indels from substitutions near the edges.</p><p>Address of the bookmark: <a href="https://ncbi.github.io/magicblast/" rel="nofollow">https://ncbi.github.io/magicblast/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/7032/computer-experts-in-biotechnology-laboratory</guid>
	<pubDate>Wed, 04 Dec 2013 02:11:43 -0600</pubDate>
	<link>https://bioinformaticsonline.com/file/view/7032/computer-experts-in-biotechnology-laboratory</link>
	<title><![CDATA[Computer experts in biotechnology laboratory]]></title>
	<description><![CDATA[<p>Only bioinformatician can understand that <strong>multiplication</strong> and <strong>division</strong> are different but same thing :)</p><p><span>Disclaimer:</span>&nbsp;This cartoon is solely designed to create humour and fun, not to offend any computer experts.</p>]]></description>
	<dc:creator>Jit</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/7032" length="35726" type="image/gif" />
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