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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30973?offset=780</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4547/bioinformatics-infrastructure-facility</guid>
  <pubDate>Sun, 15 Sep 2013 09:22:25 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Infrastructure Facility]]></title>
  <description><![CDATA[
<p>The Bioinformatics Infrastructure Facility has started working in the year 2007 at Presidency College, Kolkata. It is one of the premier institutes of India and boasts of a rich heritage and great alumni. The Infrastructure Facility has a dedicated team headed by Sayak Ganguli and ably supported by Priayanka Dhar. The coordinator of the facility is Abhijit Datta of the Post Graduate Department of Botany. The lab mainly focusses on the analysis of the RNA Induced Silencing Complex. Recent highlights include the presentation of a paper at the RNAi World Congress.</p>

<p>More @ http://bioinfo-presiuniv.edu.in/index.php</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/42664/common-bioinformatics-interview-questions</guid>
	<pubDate>Sat, 23 Jan 2021 06:07:50 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/42664/common-bioinformatics-interview-questions</link>
	<title><![CDATA[Common Bioinformatics Interview Questions !]]></title>
	<description><![CDATA[<p>The possibility of an interview for a bioinformatics position in the life sciences may be very disquieting, but the same concerns emerge time and again in my experience. So, it is exceedingly worthwhile to plan for future bioinformatics interview questions. Doing this will really give you the advantage in obtaining the position.</p><p>The following 5 questions are those that I have heard many times during the job-search process. There is no reason for not planning responses in such situations.</p><p><strong>1. Tell Us About Yourself</strong><br />This is a very typical opener in interviews. It's a perfect question to ask, and getting something planned will really help you concentrate and ease in the conversation. However, you need to make sure that your response is applicable to the job you're interviewing.<br />It's probably better to keep your answer professional. Try to include these in the answer as well: where did your love of science and bioinformatics come from? How the heck did you end up in this field? Why programming and scripting ?</p><p><strong>2. What is your plan for your bioinformatics career? / How do you look at yourself in five years? / How are your personal objectives to accomplish these goals / What are the plan for your research fundings ?</strong></p><p>Your CV/resume has already impressed the selection panel if you have been invited for an interview. The questions from the bioinformatics interview team provide an incentive for you to market yourself and illustrate the work in question with the most appropriate knowledge.</p><p><strong>3. What do you understand about the job description/What would your suggested research path be if you were a successful candidate?</strong><br />Summarize the specifics of the advertised bioinformatics position in your own words. Follow on with some suggestions of how you want to extend your research and create your own projects within the community.</p><p><strong>4. Will you work as a group or do you want to work on your own?</strong><br />This requirement can vary from jobs to job, so when addressing, be alert. A company/research PI may need a bioinformatician that is able to work on a single project autonomously, or they may need a person who can help direct and organize a team. In your response, refer to the job description.</p><p><strong>5. What particular methods have you used to date with your experiments?</strong><br />You might have experience with all the laboratory techniques described in the job description, but stress the ones you highly experienced with. Highlight your professional abilities and stress that you are extremely capable of mastering new techniques with others ...</p><p>At the end of the day, remember that you're questioning the jury as well as they're interviewing you. You will ought to think of any questions you would like the interview panel to pose. This indicates that you have done your homework and serious about the position.</p><p>All the best for your future job interview.</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/2492/plos-computational-biology-translational-bioinformatics-educational-resources</guid>
	<pubDate>Fri, 16 Aug 2013 12:24:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/2492/plos-computational-biology-translational-bioinformatics-educational-resources</link>
	<title><![CDATA[PLOS Computational Biology: Translational Bioinformatics educational resources]]></title>
	<description><![CDATA[<p>PLOS present collection of Education articles:&nbsp; &ldquo;Translational Bioinformatics&rdquo;. This collection is presented as an online &ldquo;book&rdquo; which could serve as a reference tool for a graduate level introductory course, marking a step in an exciting new direction for the Education section of the journal.</p>
<p>Blog : http://blogs.plos.org/biologue/2012/12/28/translational-bioinformatics-plos-computational-biology-presents-an-educational-resource-for-an-emerging-field/</p>
<p>Educational Material : http://www.ploscollections.org/article/browseIssue.action?issue=info:doi/10.1371/issue.pcol.v03.i11</p><p>Address of the bookmark: <a href="http://www.ploscollections.org/article/browseIssue.action?issue=info:doi/10.1371/issue.pcol.v03.i11" rel="nofollow">http://www.ploscollections.org/article/browseIssue.action?issue=info:doi/10.1371/issue.pcol.v03.i11</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/43044/kanthida-lab</guid>
  <pubDate>Wed, 28 Apr 2021 02:27:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Kanthida Lab !]]></title>
  <description><![CDATA[
<p>Research Interest: </p>

<p>Bioinformatics </p>

<p>High-throughput and high-dimensional data analysis</p>

<p>Microbiome data analysis (Main focus)</p>

<p>Next-generation and third-generation sequencing data analysis for genomics</p>

<p>Gene expression data analysis</p>

<p>Machine learning for biological data</p>

<p>Biomarkers identification </p>

<p>Database and web-application for biological data</p>

<p>More at <br />https://sites.google.com/mail.kmutt.ac.th/kanthida-k/home?authuser=0</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/2699/translational-bioinformatics-transforming-300-billion-points-of-data</guid>
	<pubDate>Tue, 20 Aug 2013 19:03:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/2699/translational-bioinformatics-transforming-300-billion-points-of-data</link>
	<title><![CDATA[Translational Bioinformatics: Transforming 300 Billion Points of Data]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/o4KNG7nd938" frameborder="0" allowfullscreen></iframe>Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics, Therapeutics, and New Insights into Disease      
      
Air date:  Wednesday, June 20, 2012, 3:00:00 PM
Time displayed is Eastern Time, Washington DC Local  
 
Description:  There is an urgent need to translate genome-era discoveries into clinical utility, but the difficulties in making bench-to-bedside translations haven't been well described. The nascent field of translational bioinformatics may help. Dr. Butte's lab at Stanford University builds and applies tools that convert more than 300 billion points of molecular, clinical, and epidemiological data (measured by researchers and clinicians over the past decade) into diagnostics, therapeutics, and new insights into disease. Dr. Butte, a bioinformatician and pediatric endocrinologist, will highlight his lab's work on using publicly available molecular measurements to find new uses for drugs, discovering new treatable mechanisms of disease in type 2 diabetes, and evaluating patients presenting with whole genomes sequenced. 

The NIH Wednesday Afternoon Lecture Series includes weekly scientific talks by some of the top researchers in the biomedical sciences worldwide. 

For more information, visit: 
The NIH Director's Wednesday Afternoon Lecture Series  
Author:  Atul Butte, M.D., Ph.D., Stanford University  
Runtime:  01:07:42  
Permanent link:  http://videocast.nih.gov/launch.asp?17321]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43323/biostarhandbook</guid>
	<pubDate>Fri, 27 Aug 2021 01:31:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43323/biostarhandbook</link>
	<title><![CDATA[biostarhandbook]]></title>
	<description><![CDATA[<p>Nice book collection for bioinformatician ... highly recommended.</p><p>Address of the bookmark: <a href="https://www.biostarhandbook.com/" rel="nofollow">https://www.biostarhandbook.com/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/2741/bioinformatician-dreams</guid>
	<pubDate>Wed, 21 Aug 2013 10:50:45 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/2741/bioinformatician-dreams</link>
	<title><![CDATA[Bioinformatician Dreams]]></title>
	<description><![CDATA[<p>Bioinformatician life is interconnected, they always dream for a powerful server, little more space on server as they are generating lots of data per run, dream to publish results in good impact journals, meetings reminders :) and research analysis off course!!!&nbsp;</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/2741" length="557537" type="image/png" />
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44516/16srna-database-download</guid>
	<pubDate>Wed, 24 Apr 2024 04:33:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44516/16srna-database-download</link>
	<title><![CDATA[16sRNA Database Download]]></title>
	<description><![CDATA[<p>Downloading 16S rRNA databases can be crucial for various bioinformatics analyses, especially in microbiome research. However, it's important to note that databases can vary based on your specific needs, such as the taxonomic coverage you require or the type of analysis you're performing. Here's a general guideline on how you can obtain 16S rRNA databases:</p><ol>
<li>
<p><span>NCBI (National Center for Biotechnology Information)</span>:</p>
<ul>
<li>NCBI provides various databases related to genetic information, including 16S rRNA sequences.</li>
<li>You can access the 16S ribosomal RNA sequences from NCBI's Nucleotide database (<a href="https://www.ncbi.nlm.nih.gov/nucleotide/" target="_new">https://www.ncbi.nlm.nih.gov/nucleotide/</a>).</li>
<li>Perform a search using keywords like "16S rRNA" or specific bacterial names to find relevant sequences.</li>
<li>You can download sequences individually or in batches using the provided tools.</li>
</ul>
</li>
<li>
<p><span>GreenGenes</span>:</p>
<ul>
<li>GreenGenes is a widely used 16S rRNA gene sequence database.</li>
<li>You can access it at <a target="_new">http://greengenes.secondgenome.com/</a>.</li>
<li>GreenGenes provides precompiled databases for various purposes, including classification, alignment, and phylogenetic analysis.</li>
</ul>
</li>
<li>
<p><span>SILVA</span>:</p>
<ul>
<li>SILVA (<a href="https://www.arb-silva.de/" target="_new">https://www.arb-silva.de/</a>) is another comprehensive database for ribosomal RNA (rRNA) sequences.</li>
<li>It covers not only 16S rRNA but also other ribosomal RNA sequences.</li>
<li>SILVA provides precompiled databases for various purposes, including taxonomic classification and alignment.</li>
</ul>
</li>
<li>
<p><span>Ribosomal Database Project (RDP)</span>:</p>
<ul>
<li>RDP (<a target="_new">http://rdp.cme.msu.edu/</a>) is a curated database that offers 16S rRNA sequences.</li>
<li>It provides tools for sequence analysis and classification.</li>
<li>You can download sequences and taxonomy information from their website.</li>
</ul>
</li>
<li>
<p><span>QIIME (Quantitative Insights Into Microbial Ecology)</span>:</p>
<ul>
<li>QIIME (<a href="https://qiime2.org/" target="_new">https://qiime2.org/</a>) is a widely used bioinformatics platform for microbiome analysis.</li>
<li>It provides tools for analyzing microbial communities, including processing 16S rRNA sequences.</li>
<li>QIIME often includes its own preprocessed 16S rRNA databases that can be used for analysis within the platform.</li>
</ul>
</li>
</ol><p>Before downloading any database, make sure to read the terms of use and citation requirements, as some databases may have specific usage policies. Additionally, consider the compatibility of the database with your analysis pipeline and software tools.</p><p>&nbsp;</p><p>NCBI 16s RNA database location&nbsp;ftp://ftp.ncbi.nih.gov/blast/db/16SMicrobial.tar.gz</p>]]></description>
	<dc:creator>LEGE</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/4072/bioinformatics</guid>
	<pubDate>Wed, 28 Aug 2013 19:16:33 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/4072/bioinformatics</link>
	<title><![CDATA[BIOINFORMATICS]]></title>
	<description><![CDATA[<iframe src="http://player.vimeo.com/video/52455340?byline=0" width="" height="" frameborder="0" webkitAllowFullScreen allowFullScreen></iframe>This is a promo video for the brand new cross-boarder branch of study - BIOINFORMATICS. It´s a co-operation between Johannes Kepler University in Linz (Austria) and University of South Bohemia in České Budějovice (Czech Republic).  Written, Edited and Directed by, DOP, VFX: Jan Míka  Sound by: Mirek Šmilauer  Narrator: Jack Bright  Produced by: FILMOFON (http://www.filmofon.cz)  Released: Nov 2012]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/4590/tigers-genome-sequenced</guid>
	<pubDate>Tue, 17 Sep 2013 16:48:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4590/tigers-genome-sequenced</link>
	<title><![CDATA[Tigers genome sequenced]]></title>
	<description><![CDATA[<p>Fifteen scientists led by Dr Jong Bhak of Genome Research Foundation, South Korea, decoded as many as 3 billion nucleotides (organic molecules that form the basic building blocks of nucleic acids, such as DNA). They identified 20,000 genes related to various functions of the tiger.&nbsp;</p><p>The biggest and perhaps most fearsome of the world's big cats, the tiger, shares 95.6 percent of its DNA with humans' cute and furry companions, domestic cats.</p><p>The new research showed that big cats have genetic mutations that enabled them to be carnivores. The team also identified mutations that allow snow leopards to thrive at high altitudes.</p><p>Reference:</p><p><a href="http://www.nbcnews.com/science/your-cat-ferocious-tigers-share-lot-95-6-percent-their-4B11182690">http://www.nbcnews.com/science/your-cat-ferocious-tigers-share-lot-95-6-percent-their-4B11182690</a></p><p><a href="http://timesofindia.indiatimes.com/home/environment/flora-fauna/Gene-mapping-of-tiger-completed/articleshow/22671681.cms">http://timesofindia.indiatimes.com/home/environment/flora-fauna/Gene-mapping-of-tiger-completed/articleshow/22671681.cms</a></p><p>Paper:</p><p><a href="http://www.nature.com/ncomms/2013/130917/ncomms3433/full/ncomms3433.html">http://www.nature.com/ncomms/2013/130917/ncomms3433/full/ncomms3433.html</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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