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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31014?offset=1360</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/45253/brava-browser</guid>
	<pubDate>Sun, 23 Aug 2026 10:32:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/45253/brava-browser</link>
	<title><![CDATA[BRaVa Browser]]></title>
	<description><![CDATA[<p>BRaVa Browser is an interactive web tool for exploring rare genetic variant associations. It allows users to search and visualize rare variant association results across genes and traits, making it easier to investigate potential relationships between genetic variation and disease or other phenotypes.</p>
<p>More at&nbsp;https://nikbaya.github.io/brava_browser/#/</p><p>Address of the bookmark: <a href="https://nikbaya.github.io/brava_browser/#/" rel="nofollow">https://nikbaya.github.io/brava_browser/#/</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23627/ra-bioinformatics-at-nipgr</guid>
  <pubDate>Tue, 04 Aug 2015 18:53:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at NIPGR]]></title>
  <description><![CDATA[
<p>Applications are invited from suitable candidates for filling up one position of Research Associate (RA) in the Institute with Dr. Senthil-Kumar Muthappa, Scientist, NIPGR, in the scheme of "Short-Term Research Fellowship" programme. The position is completely on temporary basis with maximum duration of three years. The initial appointment will be for a period of one year, which can be curtailed or extended based on the performance of the candidate and discretion of the Competent Authority.</p>

<p>The candidate is expected to have experience in handling functional genomics tools to dissect defense responses against bacterial pathogens and drought stress tolerance. This project may involve use of bioinformatics tools, database development, large scale transcriptome profiling, virus-induced gene silencing and any other research work as assigned by the PI.</p>

<p>Qualification: Candidates having a Ph. D. degree in Bioinformatics/Plant Molecular Biology/Plant Physiology/Plant Pathology/Plant Breeding &amp; Genetics and strong publication record can apply. Candidates having prior work experience in using advanced molecular biology tools in laboratory with strong bioinformatics knowledge are preferred.</p>

<p>The Fellowship amount for the position will be given at par with the similar fellowships by DBT/DST.</p>

<p>NIPGR reserves the right to select the candidate against the above post depending upon the qualifications and experience of the candidate. Reservation of post shall be as per Govt. of India norms.</p>

<p>Eligible candidates may apply by sending hard copy of complete application in the given format with a cover letter showing interest and specifying the position. The attested copies of the mark-sheets, certificates, proof of research experience/publications are to be attached. The application should reach at the address given below within 15 days from the date of advertisement. The envelope must be superscribed by "Application for the post of RA under NIPGR Short-term research fellowship programme". No TA/DA will be paid for attending the interview.</p>

<p>ONLY hard copy of the application in the given format will be accepted.<br />www.nipgr.res.in/files/careers/format_RA2.doc</p>

<p>Dr. Senthil-Kumar Muthappa<br />Staff Scientist - III,<br />National Institute of Plant Genome Research (NIPGR)<br />Aruna Asaf Ali Marg, P.O. Box NO. 10531,<br />New Delhi - 110067</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38535/nanopack-visualizing-and-processing-long-read-sequencing-data</guid>
	<pubDate>Tue, 25 Dec 2018 21:20:50 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38535/nanopack-visualizing-and-processing-long-read-sequencing-data</link>
	<title><![CDATA[NanoPack: visualizing and processing long-read sequencing data]]></title>
	<description><![CDATA[The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools.<p>Address of the bookmark: <a href="https://github.com/wdecoster/nanopack" rel="nofollow">https://github.com/wdecoster/nanopack</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40699/kevler-reference-free-variant-discovery-in-large-eukaryotic-genomes</guid>
	<pubDate>Tue, 28 Jan 2020 03:21:53 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40699/kevler-reference-free-variant-discovery-in-large-eukaryotic-genomes</link>
	<title><![CDATA[Kevler: Reference-free variant discovery in large eukaryotic genomes]]></title>
	<description><![CDATA[<p><span>Welcome to&nbsp;</span><span>kevlar</span><span>, software for predicting&nbsp;</span><em>de novo</em><span>&nbsp;genetic variants without mapping reads to a reference genome! kevlar's&nbsp;</span><em>k</em><span>-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs), insertion/deletion variants (indels), and structural variants (SVs) simultaneously with a single simple model.&nbsp;</span></p>
<p><span>More at&nbsp;<a href="https://kevlar.readthedocs.io/en/latest/">https://kevlar.readthedocs.io/en/latest/</a></span></p>
<p><span><a href="https://www.cell.com/iscience/pdf/S2589-0042(19)30259-7.pdf">https://www.cell.com/iscience/pdf/S2589-0042(19)30259-7.pdf</a></span></p><p>Address of the bookmark: <a href="https://github.com/kevlar-dev/kevlar" rel="nofollow">https://github.com/kevlar-dev/kevlar</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23379/jrf-in-bioinformatics-tezpur-universityn</guid>
  <pubDate>Fri, 17 Jul 2015 19:42:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF in Bioinformatics @ Tezpur Universityn]]></title>
  <description><![CDATA[
<p>Tezpur University: Napaam – 784 028:</p>

<p>Assam Applications are invited for Walk-in-Interview for the following temporary positions in the MHRD sponsored Centre of Excellence under FAST project entitled “Machine Learning Research and Big Data Analysis” under the Principal Investigator Professor D.K. Bhattacharyya, Department of Computer Science &amp; Engineering, Tezpur University.</p>

<p>Position : Senior Research Fellows (SRFs) in the field of (i) Bioinformatics (ii) Natural Language Processing / Speech Processing (iii) Cognitive Radio Networks / Optical Networks (iv) Network Security. No. of Positions : Five (05).</p>

<p>Qualification : First class in ME / M. Tech. in CSE / IT / ECE with research experience in relevant fields of research. Candidates having valid GATE / NET score shall be preferred.</p>

<p>Fellowship : Rs. 18,000/- (Rupees Eighteen Thousand) only per month.</p>

<p>Duration : Two (02) years and may be extended depending on status of the project.</p>

<p>Position : Junior Research Fellows (JRFs) in the field of Bioinformatics</p>

<p>No. of Positions : One (01).</p>

<p>Qualification : First class in B. Tech. in CSE / IT/ ECE or MCA with consistently good academic records. Candidates with M. Tech. in CSE / IT / ECE shall be preferred.</p>

<p>Fellowship : Rs. 12,000/- (Rupees twelve Thousand) only per month.</p>

<p>Duration : Two (02) years and may be extended depending on status of the project.</p>

<p>Interested candidates may send their application on plain paper by post along with his/her educational qualifications, research experience certificates (for Senior Research Fellow), 02 copies of recent passport/stamp size photograph and contact phone number to Prof. D.K. Bhattacharyya, Principal Investigator, Department of Computer Science &amp; Engineering, Tezpur University, Napaam- 784028 or mail it to dkb@tezu.ernet.in (or to smh@tezu.ernet.in) within 15 days of publication of this advertisement.</p>

<p>Advertisement: www.tezu.ernet.in/ProjectWalkin/Advt_CoE_5816-A.pdf</p>
]]></description>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33887/gview-a-java-application-for-viewing-and-examining-prokaryotic-genomes-in-a-circular-or-linear-context</guid>
	<pubDate>Fri, 14 Jul 2017 07:47:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33887/gview-a-java-application-for-viewing-and-examining-prokaryotic-genomes-in-a-circular-or-linear-context</link>
	<title><![CDATA[GView: A Java application for viewing and examining prokaryotic genomes in a circular or linear context]]></title>
	<description><![CDATA[<p>GView is a Java application for viewing and examining prokaryotic genomes in a circular or linear context. It accepts standard sequence file formats and an optional style specification file to generate customizable, publication quality genome maps in bitmap and scalable vector graphics formats. GView features an interactive pan-and-zoom interface, a command-line interface for incorporation in genome analysis pipelines, and a public Application Programming Interface for incorporation in other Java applications.</p>
<p><strong>Availability:</strong>&nbsp;GView is a freely available application licensed under the GNU Public License. The application, source code, documentation, file specifications, tutorials and image galleries are available at&nbsp;<a href="http://gview.ca/" target="pmc_ext">http://gview.ca</a></p>
<p><strong>Contact:</strong>&nbsp;<a href="mailto:dev@null">ac.cg.cpsa-cahp@raalesmod.nav.yrag</a></p>
<p>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2995121/</p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2995121/" rel="nofollow">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2995121/</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23493/srf-post-in-nehu-shillong</guid>
  <pubDate>Sat, 25 Jul 2015 20:09:50 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF post in NEHU, Shillong]]></title>
  <description><![CDATA[
<p>Dept of Biochemistry<br />North-Eastern Hill University<br />Umshing, Shillong- 793 022</p>

<p>Applications are invited for the post of Senior Research Fellow- SRF (one) and Junior Research Fellow- JRF (one) to be appointed in a SERB-funded major research project entitled “Biochemical and functional properties of Synechocystis Glutathione S-transferase(s)” sanctioned to Dr. Timir Tripathi, Molecular and Structural Biophysics Laboratory, Department of Biochemistry, NEHU, Shillong.</p>

<p>Essential Qualifications: For both positions M.Sc. or equivalent with a good academic record is a prerequisite.</p>

<p>For Project-SRF, experience in bioinformatics/computational biology is required, which should be evident by publications.</p>

<p>Students waiting for their last semester result can apply for JRF position.</p>

<p>Stipend: As per SERB norms.</p>

<p>Interested students can email their detailed bio-data including mobile number and recent photograph to msb.biochem@gmail.com, latest by 01.08.15. The hard copy is not required at this stage.</p>

<p>The date of interview will be informed after primary scrutiny of the applications. No TA/DA will be paid if called for interview. P.S: Students applied for the same post as per date 01.06.15, need not to apply again as their application will be considered in this advertisement also.</p>

<p>For details of the research work of the PI’s group kindly visit www.ttripathi.webs.com</p>

<p>Dr. Timir Tripathi Principal Investigator DST-SERB Project Department of Biochemistry NEHU, Shillong</p>

<p>Advertisement: www.nehu.ac.in/Advertisements/BiochemPVAdvtTT_200715.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42472/maftools-summarize-analyze-and-visualize-maf-files</guid>
	<pubDate>Wed, 23 Dec 2020 05:29:33 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42472/maftools-summarize-analyze-and-visualize-maf-files</link>
	<title><![CDATA[maftools : Summarize, Analyze and Visualize MAF Files]]></title>
	<description><![CDATA[<p><span>With advances in Cancer Genomics,&nbsp;</span><a href="https://docs.gdc.cancer.gov/Data/File_Formats/MAF_Format/">Mutation Annotation Format</a><span>&nbsp;(MAF) is being widely accepted and used to store somatic variants detected.&nbsp;</span><a href="http://cancergenome.nih.gov/">The Cancer Genome Atlas</a><span>&nbsp;Project has sequenced over 30 different cancers with sample size of each cancer type being over 200.&nbsp;</span><a href="https://wiki.nci.nih.gov/display/TCGA/TCGA+MAF+Files">Resulting data</a><span>&nbsp;consisting of somatic variants are stored in the form of&nbsp;</span><a href="https://docs.gdc.cancer.gov/Data/File_Formats/MAF_Format/">Mutation Annotation Format</a><span>. This package attempts to summarize, analyze, annotate and visualize MAF files in an efficient manner from either TCGA sources or any in-house studies as long as the data is in MAF format.</span></p><p>Address of the bookmark: <a href="https://www.bioconductor.org/packages/release/bioc/vignettes/maftools/inst/doc/maftools.html" rel="nofollow">https://www.bioconductor.org/packages/release/bioc/vignettes/maftools/inst/doc/maftools.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23673/ra-bioinformatics-at-alagappa-university</guid>
  <pubDate>Sat, 08 Aug 2015 01:36:35 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Alagappa University]]></title>
  <description><![CDATA[
<p>RA Bioinformatics</p>

<p>Eligibility : MSc(Bio-Chemistry, Bio-Informatics, Bio-Tech)</p>

<p>Location : Chennai</p>

<p>Last Date : 20 Aug 2015</p>

<p>Hiring Process : Walk - In<br />Alagappa University - Job Details</p>

<p>RA Bioinformatics Job position in Alagappa University</p>

<p>Qualification: M.Sc., in Bioinformatics/Biotechnology/Biophysics/Biochemistry/ Life Sciences</p>

<p>No.of Post: One</p>

<p>Salary : Rs. 11000<br />How to apply</p>

<p>A walk-in Interview will be held at the Department of Biotechnology, Alagappa University, Science Campus, Karaikudi 630 004 on 20.08.2015 (Thursday) at 10.30 AM.</p>

<p>Interested candidates are encouraged to send their Curriculum Vitae by email in advance. On the day of interview, the candidates must produce original certificates in proof of their educational qualification and experience and a recommendation letter from the Head of the Department/Institution where last studied/worked. Candidates who have already passed the required Degree alone are eligible to appear for interview.</p>

<p>Click Here for more http://alagappauniversity.ac.in/files/news_files/Notification.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41442/gsp4pdb-a-web-tool-to-visualize-search-and-explore-protein-ligand-structural-patterns</guid>
	<pubDate>Sun, 15 Mar 2020 03:41:12 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41442/gsp4pdb-a-web-tool-to-visualize-search-and-explore-protein-ligand-structural-patterns</link>
	<title><![CDATA[GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns]]></title>
	<description><![CDATA[<p><span><span>GSP4PDB is a user-friendly and efficient application to search and discover new patterns of protein-ligand interaction.</span></span></p>
<p><span>GSP4PDB</span><span>&nbsp;is part of the services provided by the&nbsp;</span><a href="https://structuralbio.utalca.cl/" target="_blank">Bioinformatic Group</a><span>&nbsp;of the&nbsp;</span><a href="http://www.utalca.cl/" target="_blank">University of Talca</a></p>
<p><a href="http://gdblab.com/gsp4pdb/gsp4pdb2/">http://gdblab.com/gsp4pdb/gsp4pdb2/</a></p>
<p>https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3352-x</p><p>Address of the bookmark: <a href="http://gdblab.com/gsp4pdb/gsp4pdb2/" rel="nofollow">http://gdblab.com/gsp4pdb/gsp4pdb2/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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