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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31209?offset=1260</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22787/senior-technical-assistant-at-pondicherry-university</guid>
  <pubDate>Wed, 17 Jun 2015 20:46:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Technical Assistant at Pondicherry University]]></title>
  <description><![CDATA[
<p>Senior Technical Assistant</p>

<p>Eligibility : BE/B.Tech(CSE, ECE, IT)</p>

<p>Location : Pondicherry</p>

<p>Last Date : 26 Jun 2015</p>

<p>Hiring Process : Face to Face Interview<br />Pondicherry University - Job DetailsDate of posting:19 May 15</p>

<p>Senior Technical Assistant Job position in Pondicherry University on temporary basis  </p>

<p>Project Title : "Bioinformatics National Certification (BINC) for certifying quality human resource in Bioinformatics"</p>

<p>Qualification : i) B.E/ B.Tech Computer Science/ Electronics &amp; Communication Engineering/ Information Technology with 55% or equivalent marks. ii) One year Experience in relevant field in Government/ Public Sector or reputed Private Organizations. Desirable : Working experience in JSP and ASP/PHP</p>

<p>No. of Post : 01</p>

<p>Department : Biotechnology</p>

<p>Pay : Rs. 27,800/- </p>

<p>Age Limit : 30 Yrs<br />How to apply</p>

<p>Both above-mentioned posts are purely on temporary basis, extended by one year based on performance and will be terminated with the completion of BINC Program at Pondicherry University. Interested Candidates may send their application in the prescribed format with self-attested copies of all mark sheets and certificates to Dr. Basant K. Tiwary, Coordinator (BINC), Centre for Bioinformatics, Pondicherry University, Puducherry-605 014 before June 26, 2015.</p>

<p>Click Here http://www.pondiuni.edu.in/news/requirement-post-one-senior-technical-assistant-one-computer-assistant-–-dept-biotechnologygove</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43353/judi-just-do-it</guid>
	<pubDate>Mon, 06 Sep 2021 02:44:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43353/judi-just-do-it</link>
	<title><![CDATA[JUDI: Just Do It]]></title>
	<description><![CDATA[<p><em>judi</em><span>&nbsp;comes from the idea of bringing the power and efficiency of&nbsp;</span><em>doit</em><span>&nbsp;to execute any kind of task under many combinations of parameter settings.</span></p>
<p><span>https://github.com/ncbi/JUDI</span></p><p>Address of the bookmark: <a href="https://github.com/ncbi/JUDI" rel="nofollow">https://github.com/ncbi/JUDI</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/poll/view/22920/how-long-have-you-been-a-bioinformatics-scientist-for</guid>
	<pubDate>Tue, 23 Jun 2015 10:55:33 -0500</pubDate>
	<link>https://bioinformaticsonline.com/poll/view/22920/how-long-have-you-been-a-bioinformatics-scientist-for</link>
	<title><![CDATA[How long have you been a bioinformatics scientist for?]]></title>
	<description><![CDATA[<p>Most of the researcher have been a scientist whole life, but infact they actually started paying&nbsp; it with at certain time.So, how long have you been in bioinformatics domain now?</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44597/imagine-in-silico-metagenomics-pipeline</guid>
	<pubDate>Sat, 06 Jul 2024 04:32:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44597/imagine-in-silico-metagenomics-pipeline</link>
	<title><![CDATA[iMAGine - in silico MetAGenomics pipeline]]></title>
	<description><![CDATA[<p dir="auto"><span>iMAGine</span>&nbsp;is a metagenomic workflow which includes filtering, assembling, and binning.</p>
<p dir="auto">This workflow includes the following tools which are needed to be installed in the system.</p>
<ol dir="auto">
<li><a href="https://github.com/OpenGene/fastp">fastp</a></li>
<li><a href="https://github.com/ablab/spades">spades assembler</a></li>
<li><a href="https://github.com/ablab/quast">QUAST</a></li>
<li><a href="https://github.com/lh3/bwa">bwa</a></li>
<li><a href="https://github.com/samtools/samtools">samtools</a></li>
<li><a href="https://bitbucket.org/berkeleylab/metabat/src/master/">metabat2</a></li>
<li><a href="https://github.com/Ecogenomics/CheckM">CheckM</a></li>
</ol><p>Address of the bookmark: <a href="https://github.com/avishekdutta14/iMAGine" rel="nofollow">https://github.com/avishekdutta14/iMAGine</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22966/ra-bioinformatics-at-icged</guid>
  <pubDate>Sun, 28 Jun 2015 12:24:01 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at ICGED]]></title>
  <description><![CDATA[
<p>Research Associate Position at ICGEB, New Delhi with Dr. Amit Sharma</p>

<p>Starting 15th July 2015, the position relates to a project specifically for in silico drug docking, screening, design, optimisation and linkage with active chemists. </p>

<p>Experience in many docking softwares and operating systems is essential. </p>

<p>Additional experience in bioinformatics and computational biology tools will be useful. </p>

<p>Submit curriculum vitae to: sb.icgeb@gmail.com</p>

<p>Closing date: 5 July 2015</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34618/mashmap-a-fast-and-approximate-software-for-mapping-long-reads-pacbioont-or-assembly-to-reference-genomes</guid>
	<pubDate>Tue, 12 Dec 2017 17:23:31 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34618/mashmap-a-fast-and-approximate-software-for-mapping-long-reads-pacbioont-or-assembly-to-reference-genomes</link>
	<title><![CDATA[MashMap: a fast and approximate software for mapping long reads (PacBio/ONT) or assembly to reference genome(s)]]></title>
	<description><![CDATA[<p><span>MashMap is a fast and approximate software for mapping long reads (PacBio/ONT) or assembly to reference genome(s). It maps a query sequence against a reference region if and only if its estimated alignment identity is above a specified threshold. It does not compute the alignments explicitly, but rather estimates a&nbsp;</span><em>k</em><span>-mer based&nbsp;</span><a href="https://en.wikipedia.org/wiki/Jaccard_index">Jaccard similarity</a><span>&nbsp;using a combination of&nbsp;</span><a href="http://www.cs.princeton.edu/courses/archive/spr05/cos598E/bib/p76-schleimer.pdf">Winnowing</a><span>&nbsp;and&nbsp;</span><a href="https://en.wikipedia.org/wiki/MinHash">MinHash</a><span>. This is then converted to an estimate of sequence identity using the&nbsp;</span><a href="http://mash.readthedocs.org/">Mash</a><span>&nbsp;distance. An appropriate&nbsp;</span><em>k</em><span>-mer sampling rate is automatically determined given minimum local alignment length and identity thresholds. The efficiency of the algorithm improves as both of these thresholds are increased.</span></p><p>Address of the bookmark: <a href="https://github.com/marbl/MashMap" rel="nofollow">https://github.com/marbl/MashMap</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/23160/opencpu</guid>
	<pubDate>Sun, 05 Jul 2015 18:34:46 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/23160/opencpu</link>
	<title><![CDATA[OpenCPU]]></title>
	<description><![CDATA[<p>OpenCPU is a system for embedded scientific computing and reproducible research. The OpenCPU server provides a reliable and interoperable <a href="https://www.opencpu.org/api.html">HTTP API</a> for data analysis based on R.</p><p>The OpenCPU <a href="https://www.opencpu.org/jslib.html">JavaScript client library</a> provides the most seamless integration of R and JavaScript available today.</p><p>OpenCPU uses standard R packaging to develop, ship and deploy web applications. Several open source <a href="https://www.opencpu.org/apps.html">example apps</a> are available from Github.</p><p>Installing your own OpenCPU server is <a href="https://www.opencpu.org/download.html">super easy</a> and only takes a few minutes.</p><p>More at https://www.opencpu.org/</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24042/research-associate-bioinformatician-university-of-bristol</guid>
  <pubDate>Wed, 26 Aug 2015 05:46:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatician @ University of Bristol]]></title>
  <description><![CDATA[
<p>This 0.5 fte role will have specific responsibility for the bioinformatic side of a Health Innovation Challenged Fund (HICF) research project investigating the application of Next Generation Sequencing (NGS) technologies to the analysis of Minimal Residual Disease (MRD) in childhood Acute Lymphoblastic Leukaemia (ALL). The successful candidate will be responsible for designing and implementing an analysis pipeline primarily to fit with the clinical need, but with the capacity to answer innovative research questions.</p>

<p>For informal enquiries please contact Anne Walsh via email: anne.walsh@bristol.ac.uk.</p>

<p>Apply at http://www.bris.ac.uk/jobs/find/details.html?nPostingID=3639&amp;nPostingTargetID=13346&amp;option=28&amp;sort=DESC&amp;respnr=1&amp;ID=Q50FK026203F3VBQBV7V77V83&amp;JobNum=ACAD101624&amp;Resultsperpage=10&amp;lg=UK&amp;mask=uobext</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23283/ra-bioinformatics-at-iisr</guid>
  <pubDate>Mon, 13 Jul 2015 02:12:10 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at IISR]]></title>
  <description><![CDATA[
<p>Bioinformatics Research Associate at Indian Institute of Spice Research</p>

<p>Pay Scale: Rs. 40,000/-per month +HRA (as admissible) for Ph.D. holders and Rs. 38,000/-p.m. + HRA (as admissible) for Master degree holder</p>

<p>Qualifications: a)Essential :</p>

<p>Ph.D.in Biotechnology/ Molecular B iology/ Genetics &amp; Plant Breeding/ Bioinformatics ( Should have the degree in life sciences at gra duate level) OR Post - Graduation in Biotechnology/ Molecular Biology/ Bioinformati cs/Genetics &amp; Plant Breeding</p>

<p>or equivalent with at least two years of research experience and 60% marks. ( should have a degree in life sciences at graduate level)</p>

<p>b) Desirable :</p>

<p>1. Working experience in plant molecular biology</p>

<p>2. Knowledge of Computational Genomics/Proteomics/ Bioinformatics</p>

<p>3. Working knowledge on Computer programming</p>

<p>Walk-in Interview will be held at The Indian Institute of Spices Research, Marikunnu P.O., Kozikode-673012, Kerala on 28/7/2015 at 10.00 AM.</p>

<p>For more details: http://www.spices.res.in/pdf/Mining%20and%20Validation%20Website.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23403/bioinformatics-project-assistant-at-vector-control-research-centre-vcrc-puducherry</guid>
  <pubDate>Sun, 19 Jul 2015 19:22:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Project Assistant at Vector Control Research Centre (VCRC), Puducherry.]]></title>
  <description><![CDATA[
<p>Applications are invited upto 27.07.2015 for filling up of one post of Project Assistant (UNRESERVED) to work under ICMR funded Non-Institutional adhoc project entitled “Biomedical Informatics centre’s of ICMR” at Vector Control Research Centre (VCRC), Puducherry.</p>

<p>Desirable qualification: M.Sc (Life Sciences) with Bioinformatics knowledge and hands on molecular biology tools.</p>

<p>Age: Not exceeding 30 years on the last date of receipt of application</p>

<p>Job work: Molecular modelling studies, Database curation, Metagenomic studies on Dengue virus</p>

<p>Advertisement: http://vcrc.res.in/writereaddata/BIPrj15.pdf</p>
]]></description>
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