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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31209?offset=540</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41998/wgddetector-a-pipeline-for-detecting-whole-genome-duplication-events-using-the-genome-or-transcriptome-annotations</guid>
	<pubDate>Thu, 23 Jul 2020 05:52:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41998/wgddetector-a-pipeline-for-detecting-whole-genome-duplication-events-using-the-genome-or-transcriptome-annotations</link>
	<title><![CDATA[WGDdetector: a pipeline for detecting whole genome duplication events using the genome or transcriptome annotations]]></title>
	<description><![CDATA[<p><span>WGDdetector pipeline that integrates all analyses including gene family constructing, dS estimating and phasing, and outputting the dS values of each paralogs pairs processed with only one command. We further chose four species (</span><em>Arabidopsis thaliana</em><span>,<span>&nbsp;</span></span><em>Juglans regia</em><span>,<span>&nbsp;</span></span><em>Populus trichocarpa</em><span><span>&nbsp;</span>and<span>&nbsp;</span></span><em>Xenopus laevis</em><span>) representing herb, wood and animal, to test its practicability. Our final results showed a high degree of accuracy with the previous studies using both genome and transcriptome data.</span></p>
<p><span>More at <a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2670-3">https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2670-3</a></span></p><p>Address of the bookmark: <a href="https://github.com/yongzhiyang2012/wgddetector" rel="nofollow">https://github.com/yongzhiyang2012/wgddetector</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23277/project-fellow-at-ihbt-palampur-himachal-pradesh</guid>
  <pubDate>Sun, 12 Jul 2015 07:54:37 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Fellow at IHBT - Palampur, Himachal Pradesh]]></title>
  <description><![CDATA[
<p>The Institute is working relentlessly on developing technologies for sustainable utilization of Himalayan bioresources, and in the area of tea, floriculture, bamboos and medicinal and aromatic plants. Looking at the mission of the Institute,the quantum of work undertaken and milestones achieved it was rightly conceived to rename the Institute from CSIR Complex Palampur to Institute of Himalayan Bioresource Technology at a high level meeting. Finally the Institute received its new name Institute of Himalayan Bioresource Technology (IHBT) in 1997 by then Prime Minister Shri H.D. Deve Gowda. Till date this is the only kind of National R&amp;D laboratory in the state of Himachal.</p>

<p>Detail Of Institute of Himalayan Bioresource Technology (IHBT) Project Fellow Recruitment:</p>

<p>No.of Posts: 02</p>

<p>Qualification : 1st Class B. Tech. in Bioinformatics/ Computational Biology Or M.Sc. in Bioinformatics/ Computational Biology with 55% marks OR M.Tech. in Bioinformatics/ Computational Biology with 55% marks.</p>

<p>Age : 28 years as on 10.06.2015</p>

<p>Pay Scale: Rs.12,000/- P.M/Rs.14,000/- P.M.</p>

<p>Age : 35 years,(Up to 40 years for members of SC/STs).</p>

<p>Selection Procedure For Institute of Himalayan Bioresource Technology (IHBT) – Project Fellow Post:</p>

<p>Written Test on 10/06/2015.</p>

<p>Shortlisted candidates will undertake face to face interview.</p>

<p>Dates are yet to be announced for the final selection</p>

<p>Walkin Procedure For Project Fellow vacancy in Institute of Himalayan Bioresource Technology (IHBT):</p>

<p>Eligible candidates may appear for Walk-in-Interview on Date : 10.06.2015, Time 9:00 A.M. Venue : CSIR- IHBT Palampur (H.P.) alongwith an application on prescribed format. Candidates must also bring with them original certificates of testimonials at the time of the appearing for interview failing which he/she will not be allowed to appear for interview.</p>

<p>Important Dates To Remember :<br />Walk in date for this job : 10/06/2015</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42941/csa-a-high-throughput-chromosome-scale-assembly-pipeline-for-vertebrate-genomes</guid>
	<pubDate>Wed, 10 Mar 2021 06:13:49 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42941/csa-a-high-throughput-chromosome-scale-assembly-pipeline-for-vertebrate-genomes</link>
	<title><![CDATA[CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes]]></title>
	<description><![CDATA[<p>The pipeline can use information from scaffolded assemblies (for example from HiC or 10X Genomics), or even from diverged (~65-100 Mya) reference genomes for ordering the contigs and thus support the assembly process. This typically results in improved contig N50 when compared to current state of the art methods.</p>
<p><img src="https://github.com/HMPNK/CSA2.6/raw/master/Fig1.png" alt="image" style="border: 0px;"></p>
<p>For smaller vertebrate genomes (~1 Gbp) chromosome scale assemblies can be achieved within 12h on high-end Desktop computers (Intel i7, 12 CPU threads, 128 GB RAM). Larger mammalian genomes (~3Gbp) can be processed within 15-18 h on server equipment (Xeon, 96 CPU threads, 1TB RAM).</p><p>Address of the bookmark: <a href="https://github.com/HMPNK/CSA2.6" rel="nofollow">https://github.com/HMPNK/CSA2.6</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23369/assistant-professor-professor-at-central-university-of-south-bihar</guid>
  <pubDate>Thu, 16 Jul 2015 22:36:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Assistant Professor/ Professor at Central University of South Bihar]]></title>
  <description><![CDATA[
<p>Central University of South Bihar</p>

<p>(Established under Central Universities Act, 2009)</p>

<p>BIT Campus, PO: B.V. College,</p>

<p>Patna – 800 014 (Bihar)</p>

<p>Employment Notice No. CUSB / 27 / Faculty / 2015</p>

<p>Appointment for Faculty Positions Applications in the prescribed form are invited from the eligible candidates for the following posts shown against the subjects to be filled up on regular/contract/re-employment after superannuation basis:</p>

<p>1 Bioinformatics - 03 Posts</p>

<p>2 Biotechnology – 02 Posts</p>

<p>12 Life Science – 04 Posts</p>

<p>The duly filled in application form, complete in all respect along with fee must be sent only by Speed post/Registered post/Courier to The Registrar, Central University of South Bihar, BIT Campus, P.O. : B.V. College, Patna-800014.</p>

<p>Last Date of Receiving Application 10th August, 2015</p>

<p>Advertisement:</p>

<p>http://cub.ac.in/index.php?option=com_content&amp;view=article&amp;id=31&amp;Itemid=157</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43384/lncpipea-nextflow-based-pipeline-for-comprehensive-analyses-of-long-non-coding-rnas-from-rna-seq-datasets</guid>
	<pubDate>Fri, 17 Sep 2021 01:57:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43384/lncpipea-nextflow-based-pipeline-for-comprehensive-analyses-of-long-non-coding-rnas-from-rna-seq-datasets</link>
	<title><![CDATA[LncPipe:A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets]]></title>
	<description><![CDATA[<p><span>The pipeline was developed based on a popular workflow framework&nbsp;</span><a href="https://github.com/nextflow-io/nextflow">Nextflow</a><span>, composed of four core procedures including reads alignment, assembly, identification and quantification. It contains various unique features such as well-designed lncRNAs annotation strategy, optimized calculating efficiency, diversified classification and interactive analysis report.&nbsp;</span><a href="https://github.com/likelet/LncPipe">LncPipe</a><span>&nbsp;allows users additional control in interuppting the pipeline, resetting parameters from command line, modifying main script directly and resume analysis from previous checkpoint.</span></p>
<p>Ref&nbsp;https://www.lncrnablog.com/lncpipe-a-nextflow-based-pipeline-for-identification-and-analysis-of-long-non-coding-rnas-from-rna-seq-data/</p>
<p><img src="https://ars.els-cdn.com/content/image/1-s2.0-S1673852718301176-gr1.jpg" alt="image" style="border: 0px;"></p><p>Address of the bookmark: <a href="https://github.com/likelet/LncPipe" rel="nofollow">https://github.com/likelet/LncPipe</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23672/jrf-in-bioinformatics-rajiv-gandhi-centre-for-biotechnology-rgcb-thiruvananthapuram</guid>
  <pubDate>Sat, 08 Aug 2015 01:22:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF in Bioinformatics @ Rajiv Gandhi Centre for Biotechnology (RGCB), Thiruvananthapuram]]></title>
  <description><![CDATA[
<p>Rajiv Gandhi Centre for Biotechnology (RGCB), Thiruvananthapuram<br />Job Code: 060815(10)Y</p>

<p>Jr Research Fellow Posts At Rajiv Gandhi Centre for Biotechnology<br />Rajiv Gandhi Centre for Biotechnology (RGCB) invites applications to recruit on vacant posts of Junior Research Fellow (JRF). Applications against these Government Jobs can be submitted on or before 15 August 2015.</p>

<p>Rajiv Gandhi Centre for Biotechnology Vacancy 2015 Details<br />Name of the post – Junior Research Fellow (JRF)<br />Total vacancies –</p>

<p>Age Limit: Below 28 years as on 15-08-2015.</p>

<p>Qualification(s): Masters Degree in Life Sciences/Biotechnology/Bioinformatics.</p>

<p>How to Apply: Duly filled-in applications in prescribed application format along with copies of required documents should be reach to: Rajiv Gandhi Centre for Biotechnology Thycaud PO, Poojappura, Thiruvananthapuram – 695014, Kerala. </p>

<p>More at http://rgcb.res.in/temporary-position-available-10/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44768/tritex-a-computational-pipeline-for-chromosome-scale-assembly-of-plant-genomes</guid>
	<pubDate>Fri, 14 Feb 2025 10:53:48 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44768/tritex-a-computational-pipeline-for-chromosome-scale-assembly-of-plant-genomes</link>
	<title><![CDATA[TRITEX, a computational pipeline for chromosome-scale assembly of plant genomes]]></title>
	<description><![CDATA[<p><span>This is the documentation of TRITEX, a computational pipeline for chromosome-scale assembly of plant genomes. It was developed in the research group Domestication Genomics at the Leibniz Institute of Plant Genetics and Crop Research (IPK) Gatersleben.</span></p><p>Address of the bookmark: <a href="https://tritexassembly.bitbucket.io/" rel="nofollow">https://tritexassembly.bitbucket.io/</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23577/senior-research-fellow-srf-bioinformatics-at-aiims-india</guid>
  <pubDate>Tue, 04 Aug 2015 03:14:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Research Fellow (SRF) Bioinformatics at AIIMS, India]]></title>
  <description><![CDATA[
<p>DEPARTMENT OF BIOTECHNOLOGY<br />ALL INDIA INSTITUTE OF MEDICAL SCIENCES<br />NEW DELHI-110029</p>

<p>Requirement of Senior Research Fellow Applications are invited for the following vacancy under Research project entitled “Exploiting temporal transcription profile, computational analysis and post-transcriptional gene silencing to identify and intercept interactions between host and dormant and actively replicating Mycobacterium tuberculosis”</p>

<p>Senior Research Fellow One</p>

<p>M.Sc. Degree in Biotechnology/ /Microbiology/Bioinformatics and 2 years research experience in the relevant field NET/GATE Qualification with at least 2 years research experience in M. tuberculosis culture and related techniques as well as transcriptome data generation and analysis.</p>

<p>1 year</p>

<p>1. Age relaxation for SC/ST/OBC/PH Candidates will be as per the government rules.</p>

<p>2. Qualification/degree should be from a reputed Institution/University.</p>

<p>3. Mere fulfilling the essential qualification/experience does not guarantee selection.</p>

<p>4. Canvassing in any form will be a disqualification.</p>

<p>5. No TA/DA will be paid either for attending the interview or joining the post.</p>

<p>Interested candidates are to submit their Curriculum Vitae by 5 PM on 17th August, 2015 to Room No.107, Department of Biotechnology, AIIMS, New Delhi-29.</p>

<p>Only shortlisted candidates will be notified by email for interview</p>

<p>Advertisement:</p>

<p>www.aiims.edu/images/pdf/recruitment/advertisement/advertisement%20of%20SRF_N1306.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36758/pbalign-maps-pacbio-reads-to-reference-sequences-and-saves-alignments-to-a-bam-file</guid>
	<pubDate>Thu, 24 May 2018 10:06:52 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36758/pbalign-maps-pacbio-reads-to-reference-sequences-and-saves-alignments-to-a-bam-file</link>
	<title><![CDATA[pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file]]></title>
	<description><![CDATA[pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file will be compatible with Quiver if --forQuiver option is specified.<p>Address of the bookmark: <a href="https://github.com/PacificBiosciences/pbalign" rel="nofollow">https://github.com/PacificBiosciences/pbalign</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23686/bioinformatics-symposium</guid>
  <pubDate>Tue, 11 Aug 2015 04:02:59 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Symposium]]></title>
  <description><![CDATA[
<p>This 2 day symposium will focus on topics in the below mentioned areas.</p>

<p>Experts from India and Japan in this fields will deliver lectures and contribute in discussions. This will provide an opportunity to the participants to interact and learn.</p>

<p>Topics:</p>

<p>    Algorithms for biomolecular Sequences / Structures<br />    Bioinformatics databases and tools<br />    High performance computing<br />    Large scale data analysis<br />    Protein function<br />    Structure based drug design<br />    Applications to specific diseases</p>

<p>More at http://www.iitm.ac.in/bioinfo/Symposium-2015/index.html</p>
]]></description>
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