<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/31300?offset=340 https://bioinformaticsonline.com/opportunity/view/2336/3rd-annual-next-generation-sequencing-asia-congress-2013-at-singapore-singapore Wed, 14 Aug 2013 09:55:04 -0500 <![CDATA[3rd Annual Next Generation Sequencing Asia Congress 2013 at Singapore, Singapore]]> The 3rd Annual Next Generation Sequencing Asia Congress is to be held on the 22nd and 23rd of October 2013 in Singapore. Over the 2 days, the conference will provide an overview of the current options of next-generation sequencing platforms, technologies, applications and the newest computational tools for the analysis of next-generation sequencing data and analytical genomics as well as overcoming data management problems. The event will attract over 200 senior-level decision makers working in areas such as next generation sequencing, analytical genomics, computational biology, oncology, RNA profiling, molecular genomics, biomarkers, bioinformatics & data management and clinical & diagnostics development.

Dated : 22 Nov 2013 -23 Nov 2013

http://www.ngsasia-congress.com/

]]> https://bioinformaticsonline.com/opportunity/view/18187/bioinformatician-for-a-lab-at-the-weizmann-institute-of-science-israel Mon, 13 Oct 2014 04:38:28 -0500 <![CDATA[Bioinformatician for a lab at the Weizmann Institute of Science, Israel]]> We are looking for enthusiastic, motivated and talented people, at all career stages (MSc, PhD, postdoctoral fellows), to join the lab! Bioinformatics in particular are invited to apply.
Our lab focuses on understanding molecular mechanisms of protein modifications in cancer and immune regulation.
We employ advanced high-throughput proteomic and genomic methods, cell biology, biochemistry, immunology, in-vivo models as well as systems biology and bioinformatics to study the biology of PTMs in health and disease. Read more here: http://yifatmerbl.com.

]]> https://bioinformaticsonline.com/fun/view/2383/golden-rules-of-bioinformatics Wed, 14 Aug 2013 21:11:33 -0500 https://bioinformaticsonline.com/fun/view/2383/golden-rules-of-bioinformatics <![CDATA[Golden Rules of Bioinformatics]]>
  • All constant are variable.
  • Copy and paste is a genetic error.
  • First solve the problem, then write the code.
  • No matter what goes wrong, it will probably look right.
  • Any simple problem can be insoluble if enough metting are held to discuss it. :P
  • Stastics is a systematic method of comming to the wrong conclusion with confidence.
  • Bug is a undocumented feature in programming languages.
  • Good biological programmer goes on summer holiday with raincoat. [because see 1]
  • Thanks god Google know python is not a python and multiplication and division are the same thing.
  • Don' be clever, complex biology will trick you.
    • ]]>     Jitendra Narayan     https://bioinformaticsonline.com/researchlabs/view/22761/pit-bioinformatics-group Tue, 16 Jun 2015 14:34:26 -0500 <![CDATA[PIT Bioinformatics Group]]> PIT Bioinformatics Group solves problems in bioinformatics and computational biology. Recent developed online tools:

    - Budapest Reference Connectome: View a parametrizable connectome (brain graph).
    - AmphoraNet: The webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data.
    - AmphoraVizu: Chart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet.
    - SCARF: Free online association rule mining tool.

    More at: http://pitgroup.org

    ]]>         https://bioinformaticsonline.com/bookmarks/view/2461/taverna-workflow-management-system Thu, 15 Aug 2013 19:34:32 -0500 https://bioinformaticsonline.com/bookmarks/view/2461/taverna-workflow-management-system <![CDATA[Taverna Workflow Management System]]> Taverna is an open source domain independent Workflow Management System – a suite of tools used to design and execute scientific workflows. Taverna has been created by the myGrid project and is funded through a range of organisations and projects.

    The Taverna suite is written in Java and includes the Taverna Engine(used for enacting workflows) that powers both the Taverna Workbench(the desktop client application) and the Taverna Server (which allows remote execution of workflows). Taverna is also available as a Command Line Tool for a quick execution of workflows from a terminal.

    Address of the bookmark: http://www.taverna.org.uk/

    ]]>     Madhvan Reddy     https://bioinformaticsonline.com/bookmarks/view/23498/algorithms-for-dna-sequencing-course-offered-each-month Sun, 26 Jul 2015 01:57:02 -0500 https://bioinformaticsonline.com/bookmarks/view/23498/algorithms-for-dna-sequencing-course-offered-each-month <![CDATA[Algorithms for DNA Sequencing (course offered each month)]]> "We will learn computational methods -- algorithms and data structures -- for analyzing DNA sequencing data. We will learn a little about DNA, genomics, and how DNA sequencing is used. We will use Python to implement key algorithms and data structures and to analyze real genomes and DNA sequencing datasets."

    Source : https://www.coursera.org/course/ads1

     

    Address of the bookmark: https://www.coursera.org/course/ads1

    ]]>     Rahul Agarwal     https://bioinformaticsonline.com/opportunity/view/2646/bioinformatics-infrastructure-facility-bif-gargi-college-university-of-delhi-traineeship Mon, 19 Aug 2013 18:43:03 -0500 <![CDATA[Bioinformatics Infrastructure Facility (BIF), Gargi College, University of Delhi @ Traineeship]]> Gargi College was established in the year 1967 and is a leading South Campus college of the University of Delhi. It is a college for women and offers education in Arts and Humanities, Commerce, Science and Education.

    Gargi believes in its mission statement that every student who passes through the portals of the college emerges as a wholly developed individual symbolizing the spirit of enterprise and inquiry that characterizes Gargi.

    Bioinformatics Infrastructure Facility (BIF), Gargi College, University of Delhi invites candidates for filling up the following purely temporary positions sponsored by DBT, New Delhi.

    1. Name of the post: Traineeship
    Essential Qualification: Post Graduate degree in Bioinformatics or any other branch of Life Sciences preferably with dissertation in Bioinformatics.
    Desirable Qualification: Prior knowledge of programming languages such as C, VB, SQL etc. and software/database development.

    2. Name of the post: Research Associate
    Essential Qualification: PhD in Bioinformatics/Biological Sciences/Computer Science or allied sciences with proven experience in bioinformatics.

    3. Name of the post: Studentship
    Essential Qualifications: Final year Post Graduate students pursuing a degree in Bioinformatics or any branch of Life Science with knowledge of bioinformatics.

    How to apply:
    Interested candidates are required to appear for the walk in interview on 29th Aug, 2013 at 10.00 AM in Principal’s Office, Gargi College, Sirifort Road, N. Delhi-110049, with their CVs, original documents and a set of Photostat copies of all original documents.

    http://www.du.ac.in/fileadmin/DU/students/Pdf/du/advt/2013/16082013_Gargi_RAplus2_Advt.pdf

    ]]>         https://bioinformaticsonline.com/opportunity/view/35422/postdoc-at-jaypee-institute-of-information-technology-jiit-noida-department-of-biotechnology Fri, 02 Feb 2018 11:13:25 -0600 <![CDATA[PostDoc at Jaypee Institute of Information Technology (JIIT), Noida Department of Biotechnology]]> Lab of Dr. Rawal is supported by generous grants to build advanced applications in emerging areas of cancer genomics, network sciences, vaccine development and epidemiology. The lab has dedicated high end Xeon servers, desktops, & laptops for research purpose. Currently, there are several researchers (JRFs, B. Techs, M. Tech and PhDs) working on several challenging bioinformatics projects. In addition, Dr. Rawal has collaborations with reputed national and international research teams.

    Dr. Rawal and his US based collaborators have recently secured grant for development of vaccine against an infectious disease agent. For this project, applications are invited for the posts of Post Doctoral Fellow/Research Scientist (One Position) for the following time-bound sponsored projects as per the details given below:

    PI: Dr. Kamal Rawal, Biotechnology Department, JIIT, Noida.

    Essential Qualification(s) for Post Doctoral Fellow/ Research Scientist:

    We are seeking an individual with expertise in analyzing literature information, text mining, network biology, data integration, and modeling. Competitive candidates would also have programming experience in scripting languages with perl, C, C++, and R programming. This position requires a PhD in Computational Biology, Bioinformatics, Biostatistics, Physics or related fields, and evidence of scientific productivity through publications in international journals. Motivation to gain an in-depth understanding of biological phenomena is required. Applications should include a current CV and names of at least three references. Application packages and inquiries regarding this position can be sent to Dr. Kamal Rawal (bioinfocvatgmaildotcom and kamaldotrawalatgmaildotcom). Screening of applications will commence immediately and the position will remain open until filled. Candidates having master’s degree with extensive experience in IT industry or research can also be considered for this post.

    Salary: Rs 50000 per month.

    Duration: 2 years or upto the project duration.

    Number of position: 1

    Candidate may also fill the following form:

    https://docs.google.com/…/1FAIpQLSdZoZ21ZoNRStEeL5…/viewform

    http://tinyurl.com/bioinfocv2017

    ]]>         https://bioinformaticsonline.com/videolist/watch/4193/bioinformatics-101-running-blast Tue, 03 Sep 2013 14:59:50 -0500 https://bioinformaticsonline.com/videolist/watch/4193/bioinformatics-101-running-blast <![CDATA[Bioinformatics 101 - Running BLAST]]> How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at the Tomato Disease Workshop 2010. For more information, please visit http://www.extension.org/pages/32521/bioinformatics-101-video.]]> https://bioinformaticsonline.com/pages/view/35805/python-learning-resources-for-bioinformatics-and-computational-biologist Fri, 02 Mar 2018 06:54:15 -0600 https://bioinformaticsonline.com/pages/view/35805/python-learning-resources-for-bioinformatics-and-computational-biologist <![CDATA[Python learning resources for bioinformatics and computational biologist !]]> Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries.

    Professionally, Python is great for backend web development, data analysis, artificial intelligence, and scientific computing. Many developers have also used Python to build productivity tools, games, and desktop apps, so there are plenty of resources to help you learn how to do those as well.

    For pros and cons visit http://www.bestprogramminglanguagefor.me/why-learn-python and http://bioinformaticsonline.com/discussion/view/459/python-vs-perl

    More resources at https://github.com/CodementorIO/Python-Learning-Resources

    Following are the list of useful python programming resources:

    ]]>     Jit