Radha Agarkar
A Bioinformatician
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National Training on Bioinformatics Computational Tools for Microbial Research Nov 19 to 30, 2013
Agricultural research in modern scientific arena is being represented by proper integration among various research fields of biological, chemical and physical sciences, because this field encompasses many more complexities of biology in nature. In...AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
By Manisha Mishra 2412 days agogithub.com - AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph AlignGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa...EMBL Postdoc position in Bacterial Gene Gain Loss
A post-doctoral fellowship is available in the research groups of Nick Goldman (EBI) and John Welch (Genetics Department, Cambridge University) under the EMBL-EBI / Cambridge Computational Biomedical Postdoctoral Fellowship scheme. The project is...CrossMap: a program for convenient conversion of genome coordinates
By Jit 2368 days agocrossmap.sourceforge.net - CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly...Mike Ritchie Lab
Mike Ritchie Lab primary research focus is the detection of susceptibility genes for common diseases such as cancer, diabetes, hypertension, and cardiovascular disease, among others. The approaches will involve the development and application of new...assemblytics: delta file to analyze alignments of an assembly to another assembly or a reference...
By Jit 2354 days agohttp://assemblytics.com/ - Download and install MUMmer Align your assembly to a reference genome using nucmer (from MUMmer package) $ nucmer -maxmatch -l 100 -c 500 REFERENCE.fa ASSEMBLY.fa -prefix OUT Consult the MUMmer manual if you encounter problems Optional: Gzip...Research Associate @ ICGEB, New Delhi.
Applications are invited for Research Associate position in the DBT Sponsored Bioinformatics Infrastructure Facility at ICGEB, New Delhi. Essential requirements: Experience of using bioinformatics tools. Experience of working in Linux. Basic...
LINKS scaffolder bloomfilter setting !
Last updated 2353 days ago by Jit➜ bin git:(master) ✗ ls -l total 68 drwxrwxr-x 3 urbe urbe 4096 Jun 15 12:15 lib -rwxrwxrwx 1 urbe urbe 65141 Jun 15 17:13 LINKS ➜ bin git:(master) ✗ pwd /home/urbe/Tools/LINKS_1.8.6/bin ➜ bloomfilter git:(master) ✗ swig -Wall -c++...SRF/JRF/RA @ UNIVERSITY OF HYDERABAD
SCHOOL OF CHEMISTRY, UNIVERSITY OF HYDERABAD Applications on plain paper along with details of CV (relevant photocopies of their qualifications/experience and reprints of published work to be attached) are invited from qualified candidates for...Converting a VCF into a FASTA given some reference !
By Jit 2318 days agoconverting a VCF file into a FASTA file given a reference sequence
