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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31345?offset=590</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26823/srf-at-nrcpb-new-deslhi</guid>
  <pubDate>Fri, 25 Mar 2016 04:53:11 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF at NRCPB, New Deslhi]]></title>
  <description><![CDATA[
<p>NRCPB Recruitment 2016 – Walk in for SRF &amp; Young Professional Posts: National Research Centre on Plant Biotechnology (NRCPB) has announced a notification for the recruitment of Senior Research Fellow &amp; Young Professional Scheme vacancies for the project “NPTC Co-ordinating Cell” on temporary &amp; co-terminus basis. Eligible candidates may walk in interview on 29-03-2016 at 10.00 AM. Other details like age limit, educational qualification, selection process &amp; how to apply are given below…</p>

<p>NRCPB Vacancy Details:<br />Total No.of Posts: 02 <br />Name of the Posts:<br />1. Senior Research Fellow: 01 Post<br />2. Young Professional Scheme: 01 Post</p>

<p>Age Limit: Candidates maximum age should be 35 years. Age relaxation 5 years for SC/ ST/ OBC and women candidates as per ICAR rules.</p>

<p>Educational Qualification: Candidates should posses M.Sc/ M.Tech/ M.C.A. in Molecular Biology/ Biotechnology/ Life Sciences/ Allied Sciences/ Agricultural Sciences/ Computer Science/ Bioinformatics with 1st division or 60% marks or equivalent.</p>

<p>Selection Process: Candidates will be selected based on interview.</p>

<p>How to Apply: Eligible candidates may attend the interview along with four copies of biodata, original certificates, attested photocopies of each of the certificates and an attested copy of recent passport size photograph at NRCPB, LBS Building, Pusa Campus, New Delhi- 110012 on 29-03-2016 at 10.00 AM.</p>

<p>Important Dates:<br />Date &amp; Time of Interview: 29-03-2016 at 10.00 AM.<br />Venue: NRCPB, LBS Building, Pusa Campus, New Delhi-110012.</p>

<p>Read more: http://www.nrcpb.res.in/content/walk-interview-srf-and-yp</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26877/research-fellow-bioinformatics</guid>
  <pubDate>Mon, 04 Apr 2016 05:41:21 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Fellow Bioinformatics]]></title>
  <description><![CDATA[
<p>Research Fellow Bioinformatics<br />Eligibility : BSc(Bio-Tech), MSc(Bio-Tech)<br />Location : Ludhiana<br />Last Date : 19 Apr 2016<br />Hiring Process : Walk - In<br />Punjab Agricultural University</p>

<p>Research Fellow Bioinformatics job opportunities in Punjab Agricultural University<br />Qualification : B.Sc. with minimum OCPA 5.00/10.00 basis or 50% marks. ii. M.Sc. in Biotechnology/ Molecular Biology/Molecular Genetics/Bioinformatics/Genetics/Plant Breeding/Plant Breeding &amp; Genetics with at least 6.50/10.00 or 65% marks. iii. Ph.D. in the relevant field with minimum OCPA 6.50/10.00 or 65% marks<br />Pay Scale : Rs.24000/-<br />Application Fee : A Bank Draft of Rs. 200/- in favour of Comptroller, Punjab Agricultural University, Ludhiana <br /> <br />How to apply<br />Walk in Interview will be held on 26.09.2016 at 11:30 a.m. in the office of the Director, School of Agricultural Biotechnology. No separate information for interview will be sent. No TA/DA will be paid for attending the interview. Candidate Should apply with detailed bio data to this office latest by 19.04.2016</p>

<p>More at http://web.pau.edu/index.php?_act=manageAllBanner&amp;DO=viewAllBanner</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26955/jrf-bioinformatics-at-nipgr</guid>
  <pubDate>Thu, 14 Apr 2016 13:12:42 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at NIPGR]]></title>
  <description><![CDATA[
<p>JRF Bioinformatics job position in National Institute of Plant Genome Research (NIPGR)</p>

<p>Title : “Short-Term Research Fellowship”</p>

<p>Qualification : Candidates having M.Sc./M.Tech degree (with minimum of 60% marks overall) or equivalent in Bioinformatics/Biotechnology or any other related field, are eligible to apply. Candidate having prior experience in the area of next-generation sequencing data analysis, bioinformatics, molecular analysis of plant genes, and structural data analysis will be preferred.</p>

<p>No.of Post : 01<br />How to apply</p>

<p>Application should sent to Dr. Gitanjali Yadav, Staff Scientist-IV, National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, P.O. Box NO. 10531, New Delhi - 110067 on or before 26th April 2016</p>

<p>More at http://www.nipgr.res.in/careers/vacancies_latest.php#</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/27046/desai-lab</guid>
  <pubDate>Thu, 21 Apr 2016 10:21:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[Desai Lab]]></title>
  <description><![CDATA[
<p>Evolutionary Dynamics and Population Genetics</p>

<p>Natural selection and other evolutionary forces lead to particular patterns of evolutionary dynamics, and they leave characteristic signatures on the genetic variation within populations.  We use a combination of theory and experiments to study the dynamics and population genetics of natural selection in asexual populations such as microbes and viruses. </p>

<p>We use both theory and experiments to study evolutionary dynamics and population genetics, particularly in situations where natural selection is pervasive.</p>

<p>http://desailab.oeb.harvard.edu/home</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27080/mrfast-micro-read-fast-alignment-search-tool</guid>
	<pubDate>Tue, 26 Apr 2016 03:50:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27080/mrfast-micro-read-fast-alignment-search-tool</link>
	<title><![CDATA[mrFAST:  Micro Read Fast Alignment Search Tool]]></title>
	<description><![CDATA[<p><span>mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads with respect to user defined error threshold, including indels up to 4+4 bp. This manual, describes how to choose the parameters and tune mrFAST with respect to the library settings. mrFAST is designed to find&nbsp;</span><strong><span style="text-decoration: underline;">'all'</span></strong><span>&nbsp; mappings for a given set of reads, however it can return one "best" map location if the relevant parameter is invoked.</span></p>
<p><span>More at&nbsp;http://mrfast.sourceforge.net/manual.html</span></p><p>Address of the bookmark: <a href="http://mrfast.sourceforge.net/manual.html" rel="nofollow">http://mrfast.sourceforge.net/manual.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27098/bioinformatics-faculty-at-tnu</guid>
  <pubDate>Wed, 27 Apr 2016 10:07:15 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Faculty at TNU]]></title>
  <description><![CDATA[
<p>TNU is hiring faculty as Professors, Associate Professors and Assistant Professors in the following research and teaching programs.</p>

<p>Basic Sciences</p>

<p>Biotechnology &amp; Bioinformatics</p>

<p>Qualifications are as per UGC norms. Please visit www.ugc.ac.in.</p>

<p>Educational, Age and experience requirements will be relaxed in exceptional cases.</p>

<p>Interested candidates are requested to apply with their complete CV with list of Publications, Patents, Industry and teaching experience at Undergraduate and Postgraduate level along with other relevant information to hr@tnu.in </p>

<p>Provide names and contact details of at least two references for confidential evaluation. </p>

<p>We follow Central University pay scales and few additional perks.     </p>

<p>TNU follows highly liberal HR Policy with no salary constraint for exceptional candidates.</p>

<p>Applications are invited for the positions of - Professor, Associate Professor &amp; Assistant Professor.<br />https://drive.google.com/file/d/0B0Y1Fpxmzyd3OHQ3aUNYa3hZY2c/view?usp=sharing</p>

<p>Reference<br />- Times of India, Ascent as on 20.04.2016.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27225/painless-package-development-for-r</guid>
	<pubDate>Tue, 03 May 2016 05:31:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27225/painless-package-development-for-r</link>
	<title><![CDATA[Painless package development for R]]></title>
	<description><![CDATA[<p>Devtools makes package development a breeze: it works with R&rsquo;s existing conventions for code structure, adding efficient tools to support the cycle of package development. With devtools, developing a package becomes so easy that it will be your default layout whenever you&rsquo;re writing a significant amount of code.</p>
<p>Before you get started be sure to check out:</p>
<ul>
<li><a href="https://groups.google.com/forum/#%21forum/rdevtools" title="Google devtools Group">devtools Google Group &ndash;&nbsp;https://groups.google.com/forum/#!forum/rdevtools</a></li>
<li><a href="http://adv-r.had.co.nz/" title="Hadley W Online Book">book on &ldquo;Advanced R programming&rdquo; &ndash;&nbsp;http://adv-r.had.co.nz/</a></li>
<li><a href="https://github.com/hadley/devtools" title="devtools GitHub">GitHub repository &ndash;&nbsp;https://github.com/hadley/devtools</a></li>
</ul>
<h3 id="getting_started">&nbsp;</h3><p>Address of the bookmark: <a href="https://www.rstudio.com/products/rpackages/devtools/" rel="nofollow">https://www.rstudio.com/products/rpackages/devtools/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27240/bioinformatics-tutor-at-pgimer</guid>
  <pubDate>Wed, 04 May 2016 08:40:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Tutor at PGIMER]]></title>
  <description><![CDATA[
<p>Postgraduate Institute of Medical Education and Research (PGIMER) - Chandigarh, Chandigarh<br />₹9,300 - ₹34,800 a month<br />Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh invites Online Applications for recruitment of following Group 'A', 'B' and 'C' posts. The closing date for submission of online applications is up to 12th May 2016.</p>

<p>No of Vacancies: 01<br />Pay Scale: Rs. 9300-34800 + Grade Pay Rs. 4600/-</p>

<p>Educational Qualification and Experience: (From Recognized University / Institute) M.Sc. in Biotechnology, Molecular Biology, Human Genomics / Biochemistry / Biophysics.</p>

<p>Age Limit: 18-50 years</p>

<p>Please see Detailed Advertisement Link for full info: https://drive.google.com/file/d/0Bz3xO6e_7OeeZllINnRyWlN5UFE/view</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27291/summer-internship-positions-at-dupont</guid>
  <pubDate>Wed, 11 May 2016 08:05:54 -0500</pubDate>
  <link></link>
  <title><![CDATA[Summer internship positions at DuPont]]></title>
  <description><![CDATA[
<p>DuPont Industrial Biosciences has several summer internship positions<br />for undergrads available. We are looking for driven and creative interns<br />to conduct research in the following areas:</p>

<p>· Enzyme immobilization supports for select enzyme systems.</p>

<p>· New tools for microbial strain and genome engineering using<br />state-of-the-art methodologies.</p>

<p>· Rapid high throughput assays to screen microorganisms from various<br />sources for enzymatic activities of interest.</p>

<p>· High throughput combinatorial approaches to the formulation of growth<br />media in support of microbial enrichments, strain isolations and growth<br />optimization.</p>

<p>· Meta-transcriptomics for the discovery of new enzymes.</p>

<p>· Strain adaptation techniques in defined chemostat environments for<br />microbial strain development.</p>

<p>The internships are based at the Experimental Station R&amp;D Center in<br />Wilmington, DE.</p>

<p>If interested, apply fast!</p>

<p>For more information and to apply, go to:</p>

<p>http://careers.dupont.com/jobsearch/job-details/industrial-biosciences-summer-internship/008549W-10/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/27321/slurm-basics</guid>
	<pubDate>Fri, 13 May 2016 04:42:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/27321/slurm-basics</link>
	<title><![CDATA[SLURM basics !]]></title>
	<description><![CDATA[<p><a href="http://bioinformaticsonline.com/bookmarks/view/27238/slurm" target="_blank">SLURM</a> is a queue management system and stands for Simple Linux Utility for Resource Management. SLURM was developed at the Lawrence Livermore National Lab and currently runs some of the largest compute clusters in the world.</p><p>SLURM is similar in many ways to most other queue systems. You write a batch script then submit it to the queue manager. The queue manager then schedules your job to run on the queue (or partition in SLURM parlance) that you designate. Below we will provide an outline of how to submit jobs to SLURM, how SLURM decides when to schedule your job and how to monitor progress.</p><p>SLURM has a number of valuable features compared to other job management systems:</p><ul>
<li><em>Kill and Requeue</em> SLURM&rsquo;s ability to kill and requeue is superior to that of other systems. It waits for jobs to be cleared before scheduling the high priority job. It also does kill and requeue on memory rather than just on core count.</li>
<li><em>Memory</em> Memory requests are sacrosanct in SLURM. Thus the amount of memory you request at run time is guaranteed to be there. No one can infringe on that memory space and you cannot exceed the amount of memory that you request.</li>
<li><em>Accounting Tools</em> SLURM has a back end database which stores historical information about the cluster. This information can be queried by the users who are curious about how much resources they have used.</li>
</ul><p><strong>Summary of SLURM commands</strong></p><p>The table below shows a summary of SLURM commands. These commands are described in more detail below along with links to the SLURM doc site.</p><table>
<tbody>
<tr><th>&nbsp;</th><th>SLURM</th><th>SLURM Example</th></tr>
<tr>
<td>Submit a batch serial job</td>
<td><a href="http://slurm.schedmd.com/sbatch.html">sbatch</a></td>
<td><code>sbatch runscript.sh</code></td>
</tr>
<tr>
<td>Run a script interatively</td>
<td><a href="http://slurm.schedmd.com/srun.html">srun</a></td>
<td><code>srun --pty -p interact -t 10 --mem 1000 /bin/bash /bin/hostname</code></td>
</tr>
<tr>
<td>Kill a job</td>
<td><a href="http://slurm.schedmd.com/scancel.html">scancel</a></td>
<td><code>scancel 999999</code></td>
</tr>
<tr>
<td>View status of queues</td>
<td><a href="http://slurm.schedmd.com/squeue.html">squeue</a></td>
<td><code>squeue -u akitzmiller</code></td>
</tr>
<tr>
<td>Check current job by id</td>
<td><a href="http://slurm.schedmd.com/squeue.html">sacct</a></td>
<td><code>sacct -j 999999</code></td>
</tr>
</tbody>
</table>]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
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