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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31345?offset=800</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29217/bioinformatics-openings-at-sri-venkateswara-college-university-of-delhi</guid>
  <pubDate>Tue, 20 Sep 2016 05:43:24 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics openings at Sri Venkateswara College, University of Delhi]]></title>
  <description><![CDATA[
<p>Bioinformatics center</p>

<p>Sri Venkateswara College (University of Delhi)</p>

<p>New Delhi- 110021</p>

<p>1. Junior Research Fellow (1 Post)</p>

<p>Applications are invited for the post of Junior Research Fellow (JRF) under DST funded project which is purely temporary and is strictly for project duration only.</p>

<p>Title of project</p>

<p>No. of post</p>

<p>Remuneration (Rs.)</p>

<p>“Computational assisted Design and Synthesis of Novel Antimalarial Agents Embodying Structural Diversity Suitable for Protease Inhibitors”</p>

<p>(One)</p>

<p>Fellowship and HRA as per DST guidelines</p>

<p>Qualification</p>

<p>Post Graduate Degree in Basic Science (M.Sc./M.Tech in Bioinformatics/Biophysics) from a recognized University in India or abroad with at least 55% marks with NET qualification or Graduate Degree in Professional Course with NET Qualification or Post Graduate Degree in Professional Course.</p>

<p>Desirable</p>

<p>Fair knowledge of Computer Aided Drug Designing (CADD), Protein Structure modeling, molecular docking, and simulations are preferable.</p>

<p>2. Traineeship (1 Post)</p>

<p>Applications are invited for the position of traineeship in DBT-BTISnet funded Bioinformatics Infrastructure Facility (BIF) to carry out project work in the area of Bioinformatics.</p>

<p>Qualification</p>

<p>Applicant should be possess PG degree/PG diploma in Bioinformatics for traineeship. The traineeship is awarded for a period of six months from the date of joining and is not extendable. The selected candidates are entitled to receive a stipend of Rs. 8000/- per month (consolidate) for a period of 6 months.</p>

<p>=====================================================================</p>

<p>3. Studentship (1 Post)</p>

<p>Applications are invited for the position of Studentship in DBT-BTISnet funded Bioinformatics Infrastructure Facility (BIF) to carry out project work in the area of Bioinformatics.</p>

<p>Qualification</p>

<p>Candidates pursuing the Final Year of Post Graduate Degree in Basic Science (M.Sc.) or Post Graduate/ Graduate Degree in Professional Course (M.Tech/B.Tech) in Bioinformatics from a recognized University in India or abroad. The selected candidates are entitled to receive a stipend of Rs. 8000/- per month (consolidate) for a period of 6 months.</p>

<p>How to Apply?</p>

<p>Applicants are required to send applications on plain paper, stating the name, address, date of birth, educational qualification, experience and Institute, along with attested photocopies of mark sheets and certificates etc. by September 20, 2016 to:</p>

<p>The Coordinator</p>

<p>Bioinformatics Center, Sri Venkateswara College</p>

<p>Benito Juarez Road, Dhaula Kuan, New Delhi- 110021</p>

<p>Applications may also be sent by email to contact@bic-svc.ac.in. Strictly mention "Application for JRF, Traineeship or Studentship" in the subject line as the case may be.</p>

<p>Short listed candidates will be called for an interview. Canvassing in any form will be a disqualification. No TA/DA will be paid either for attending the interview or joining the post.</p>

<p>For more details visit our lab webpage: http://www.bic-svc.ac.in</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43815/kebabs-package-provides-functionality-for-kernel-based-analysis-of-biological-sequences-via-support-vector-machine-svm-based-methods</guid>
	<pubDate>Fri, 04 Mar 2022 00:14:11 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43815/kebabs-package-provides-functionality-for-kernel-based-analysis-of-biological-sequences-via-support-vector-machine-svm-based-methods</link>
	<title><![CDATA[kebabs: package provides functionality for kernel based analysis of biological sequences via Support Vector Machine (SVM) based methods]]></title>
	<description><![CDATA[<p><span>The&nbsp;</span><tt>kebabs</tt><span>&nbsp;package provides functionality for kernel based analysis of biological sequences via Support Vector Machine (SVM) based methods. Biological sequences include DNA, RNA, and amino acid (AA) sequences. Sequence kernels define similarity measures between sequences. The package implements some of the most important kernels for sequence analysis in a very flexible and efficient way and extends the standard position-independent functionality of these kernels in a novel way to take the position of patterns in the sequences into account for the similarity measure.</span></p>
<p>http://www.bioinf.jku.at/software/kebabs/</p>
<p>http://bioconductor.org/packages/release/bioc/vignettes/kebabs/inst/doc/kebabs.pdf</p><p>Address of the bookmark: <a href="http://www.bioinf.jku.at/software/kebabs/" rel="nofollow">http://www.bioinf.jku.at/software/kebabs/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44541/powerful-books-for-learning-data-analysis-with-r</guid>
	<pubDate>Tue, 28 May 2024 07:42:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44541/powerful-books-for-learning-data-analysis-with-r</link>
	<title><![CDATA[Powerful books for learning data analysis with R]]></title>
	<description><![CDATA[<p><span>R is powerful tool for data analysis, visualization, and machine learning. And it costs $0 to use! Here are six FREE books you can use to learn R today:</span></p>
<p><span>https://csgillespie.github.io/efficientR/</span></p>
<p><span>https://r-graphics.org/</span></p>
<p><span>https://rstudio-education.github.io/hopr/</span></p>
<p><span>https://r-pkgs.org/</span></p>
<p><span>https://r4ds.had.co.nz/</span></p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="https://r-graphics.org/" rel="nofollow">https://r-graphics.org/</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29282/cosmic</guid>
	<pubDate>Sat, 01 Oct 2016 15:04:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29282/cosmic</link>
	<title><![CDATA[COSMIC]]></title>
	<description><![CDATA[<p>The accurate description and annotation of structural variants can be complex. &nbsp;This is due to the different resolution that variants are reported from traditional&nbsp;cytogenetic coordinates down to the actual base pair positions. Furthermore, multiple&nbsp;rearrangements in a single area of the genome can make cataloguing and interpreting&nbsp;their effects challenging.&nbsp;</p>
<p>The Rearrangement Overview page describes the one or more breakpoints which make up a structural&nbsp;variant. A breakpoint is defined as a region or point where the sample sequence has altered&nbsp;from the reference sequence. Minimum interpretation is made of this data. One variant event&nbsp;can consist of one or multiple breakpoints. The Syntax (shown above the table) gives a detailed description of the variant and its location &nbsp;(e.g. chr11:g.36585230_76606619del, a deletion of&nbsp;roughly 40Mb on chromosome 11). Syntax is based on HGVS mutation nomenclature recommendations&nbsp;[http://www.hgvs.org/rec.html].&nbsp;</p>
<p>http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview</p><p>Address of the bookmark: <a href="http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview" rel="nofollow">http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/2518/genome-browsers</guid>
	<pubDate>Fri, 16 Aug 2013 19:04:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/2518/genome-browsers</link>
	<title><![CDATA[Genome Browsers]]></title>
	<description><![CDATA[<p>Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes, prokaryotes, etc.</p><p>Following are the weblink for different available browsers:</p><p><a href="http://www.ensembl.org/index.html">http://www.ensembl.org/index.html</a></p><p><a href="http://ensemblgenomes.org/">http://ensemblgenomes.org/</a></p><p><a href="http://genome.ucsc.edu/">http://genome.ucsc.edu/</a></p><p><a href="http://www.ncbi.nlm.nih.gov/genome">http://www.ncbi.nlm.nih.gov/genome</a></p><p><a href="http://www.ebi.ac.uk/genomes/">http://www.ebi.ac.uk/genomes/</a></p><p><a href="http://flybase.org/">http://flybase.org/</a></p><p><a href="http://cmr.jcvi.org/tigr-scripts/CMR/CmrHomePage.cgi">http://cmr.jcvi.org/tigr-scripts/CMR/CmrHomePage.cgi</a></p><p><a href="http://www.sanger.ac.uk/resources/databases/">http://www.sanger.ac.uk/resources/databases/</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29410/entrez-direct-e-utilities-on-the-unix-command-line</guid>
	<pubDate>Wed, 19 Oct 2016 08:06:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29410/entrez-direct-e-utilities-on-the-unix-command-line</link>
	<title><![CDATA[Entrez Direct: E-utilities on the UNIX Command Line]]></title>
	<description><![CDATA[<p>Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.</p>
<p>EDirect also provides an argument-driven function that simplifies the extraction of data from document summaries or other results that are returned in structured XML format. This can eliminate the need for writing custom software to answer ad hoc questions. Queries can move seamlessly between EDirect commands and UNIX utilities or scripts to perform actions that cannot be accomplished entirely within Entrez.</p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/books/NBK179288/" rel="nofollow">https://www.ncbi.nlm.nih.gov/books/NBK179288/</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29576/impute2</guid>
	<pubDate>Thu, 27 Oct 2016 11:21:44 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29576/impute2</link>
	<title><![CDATA[IMPUTE2]]></title>
	<description><![CDATA[<p><strong>IMPUTE2</strong>&nbsp;is a computer program for phasing observed genotypes and imputing missing genotypes. Most people use just a couple of the program's basic functions, but we have also built up a collection of specialized and powerful options. If you are new to&nbsp;<strong>IMPUTE2</strong>, or indeed to phasing and imputation in general, we suggest that you start by learning the basics.</p>
<p>You should begin by downloading the program from&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#download">here</a>. You will need to choose the link that matches your computing platform and then follow the instructions for opening the download package.</p>
<p>Once you have done this, you will be ready to try some example analyses on the test data that are provided with the download. The section on&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#examples">Examples</a>&nbsp;shows how to use the most common&nbsp;<strong>IMPUTE2</strong>&nbsp;functions. We suggest that you work through these examples and try to understand what the elements of each command are doing. If you don't understand something or would like to know if the program can perform a function that isn't listed, you can read our&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#faq">FAQ</a>&nbsp;or submit a question to our&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#mail_list">mail list</a>.</p>
<p>When you have learned the basic functionality of the program, you can use several features of this website to prepare your own analysis:</p>
<ul>
<li>Learn about&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#best_practices">best practices</a>&nbsp;for imputation.</li>
<li>Download&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#reference">reference data</a>&nbsp;that you can use to impute genotypes in your study.</li>
<li>Look through a complete list of&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#options">program options</a>.</li>
</ul><p>Address of the bookmark: <a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html" rel="nofollow">https://mathgen.stats.ox.ac.uk/impute/impute_v2.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29603/statistical-for-biological-research</guid>
	<pubDate>Thu, 03 Nov 2016 04:59:48 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29603/statistical-for-biological-research</link>
	<title><![CDATA[Statistical for biological research]]></title>
	<description><![CDATA[<p>There is no disputing the importance of statistical analysis in biological research, but too often it is considered only after an experiment is completed, when it may be too late.</p>
<p>This collection highlights important statistical issues that biologists should be aware of and provides practical advice to help them improve the rigor of their work.</p>
<p><em>Nature Methods</em>' <strong><a href="http://www.nature.com/collections/qghhqm/pointsofsignificance">Points of Significance</a></strong> column on statistics explains many key statistical and experimental design concepts. <strong><a href="http://www.nature.com/collections/qghhqm/resources">Other resources</a></strong> include an online plotting tool and links to statistics guides from other publishers.</p><p>Address of the bookmark: <a href="http://www.nature.com/collections/qghhqm" rel="nofollow">http://www.nature.com/collections/qghhqm</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29679/comparative-genomics-educational-material-and-papers-bookmarks</guid>
	<pubDate>Wed, 09 Nov 2016 16:23:30 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29679/comparative-genomics-educational-material-and-papers-bookmarks</link>
	<title><![CDATA[Comparative genomics educational material and papers bookmarks]]></title>
	<description><![CDATA[<p><span>Alignment of the porcine genome against seven other mammalian genomes (</span><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#supplementary-information">Supplementary Information</a><span>) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions (EBRs) were located. The number of porcine EBRs </span><span>is comparable to the number of bovine-lineage-specific EBRs (100) reported earlier using a slightly lower resolution (500</span><span><span>&thinsp;</span></span><span>kilobases (kb)), indicating that both lineages evolved with an average rate of ~2.1 large-scale rearrangements per million years after the divergence from a common cetartiodactyl ancestor ~60</span><span><span>&thinsp;</span></span><span>Myr ago</span><sup><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#ref2" title="Meredith, R. W. et al. Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science 334, 521-524 (2011)">2</a></sup><span>. This rate compares to ~1.9 rearrangements per million years within the primate lineage (</span><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#supplementary-information">Supplementary Table 11</a><span>). A total of 20 and 18 cetartiodactyl EBRs (shared by pigs and cattle) were detected using the pig and human genomes as a reference, respectively.</span></p><p>Address of the bookmark: <a href="http://www.nature.com/nature/journal/v491/n7424/abs/nature11622.html" rel="nofollow">http://www.nature.com/nature/journal/v491/n7424/abs/nature11622.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29886/research-officer-at-national-tea-research-foundation</guid>
  <pubDate>Fri, 18 Nov 2016 04:19:24 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Officer at National Tea Research Foundation]]></title>
  <description><![CDATA[
<p>National Tea Research Foundation (NTRF) a registered body, requires qualified and experienced agricultural research scientist for contractual appointment as per details below :</p>

<p>Post Research Officer, NTRF, Kolkata</p>

<p>Essential Post Graduate degree in Life Science having special paper in Bioinformatics. Post Graduate degree in Bioinformatics.</p>

<p>Desirable Ph. D. in the area of computational biology or bioinformatics.</p>

<p>Job Experience Work experience on database development, capable to work independently and efficient in bioinformatics related project.</p>

<p>Job Responsibility</p>

<p>To develop database on various aspects of tea research.</p>

<p>Screening of the In-house projects of NTRF at the preliminary level.</p>

<p>Review and evaluation of In-house projects of NTRF. Technical monitoring of the In-house projects of NTRF.</p>

<p>Reviewing the final technical report of the In-house projects of NTRF.</p>

<p>Putting-up of same proposals for taking approval and sanction of the competent authority.</p>

<p>Physical and technical verification of the In-house projects of NTRF.</p>

<p>To assist in organizing seminars / workshops / meetings etc.</p>

<p>Interested candidate may appear for walk-in Interview on 17 th November, 2016</p>

<p>More Info :</p>

<p>http://www.teaboard.gov.in/pdf/Recruitment_for_the_post_of_Research_Officer_pdf7538.pdf</p>
]]></description>
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