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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31351?offset=1180</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28272/bioinformatics-openings-at-icgeb-new-delhi-india</guid>
  <pubDate>Mon, 04 Jul 2016 01:04:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics openings at ICGEB NEW DELHI, INDIA]]></title>
  <description><![CDATA[
<p>Applications are invited for:</p>

<p>ICGEB NEW DELHI, INDIA</p>

<p>Biotechnology research positions</p>

<p>Projects include:</p>

<p>a) protein structure determination<br />b) malaria parasite biology<br />c) genomics and metagenomics<br />d) molecular and cellular biology<br />e) bioinformatics and computational biology</p>

<p>Minimum eligibility for students who have already obtained a MSc:</p>

<p>1) INSPIRE award for PhD<br />2) SPM award for PhD<br />3) CSIR/DBT/DST JRF for PhD</p>

<p>Applicants should submit their curriculum vitae by email to: sb.icgeb@gmail.com by 30 August 2016</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34862/pasa-gene-structure-annotation-and-analysis</guid>
	<pubDate>Tue, 26 Dec 2017 21:14:03 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34862/pasa-gene-structure-annotation-and-analysis</link>
	<title><![CDATA[PASA: Gene Structure Annotation and Analysis]]></title>
	<description><![CDATA[<p><span>PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.</span></p><p>Address of the bookmark: <a href="http://pasapipeline.github.io/" rel="nofollow">http://pasapipeline.github.io/</a></p>]]></description>
	<dc:creator>biogeek</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/28449/aravind-j-shankar-gets-all-india-rank-1-in-binc-2016</guid>
	<pubDate>Tue, 19 Jul 2016 05:19:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/28449/aravind-j-shankar-gets-all-india-rank-1-in-binc-2016</link>
	<title><![CDATA[Aravind J Shankar gets all India rank 1 in BINC, 2016]]></title>
	<description><![CDATA[<p>Aravind J Shankar, a bioinformatics graduate of SASTRA University, has secured the all India rank 1 in the Bioinformatics National Certification (BINC) 2016, organised by the Department of Biotechnology, Government of India.</p><p>The BINC is a nationwide examination aimed at certifying professionals in bioinformatics and tests their theoretical and practical knowledge across three phases of examination. He is entitled to receive a DBT research fellowship leading to a Ph.D. from any premier research institute in India.</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37230/navigator-network-analysis-visualization-and-graphing-toronto</guid>
	<pubDate>Tue, 03 Jul 2018 05:05:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37230/navigator-network-analysis-visualization-and-graphing-toronto</link>
	<title><![CDATA[NAViGaTOR: Network Analysis, Visualization and Graphing Toronto]]></title>
	<description><![CDATA[NAViGaTOR –  Network Analysis, Visualization, &amp; Graphing TORonto is a software system for scaleable visualizing and analyzing networks.

The current version, NAViGaTOR 3, increases modularity, improves scaleability, extends input/output options, brings new network views and analysis algorithms.

http://142.150.188.236/navigatorwp/<p>Address of the bookmark: <a href="http://142.150.188.236/navigatorwp/" rel="nofollow">http://142.150.188.236/navigatorwp/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/28564/dbt-%E2%80%93-bioinformatics-industrial-training-programme-biitp-2016-%E2%80%93-17</guid>
	<pubDate>Wed, 27 Jul 2016 04:09:59 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/28564/dbt-%E2%80%93-bioinformatics-industrial-training-programme-biitp-2016-%E2%80%93-17</link>
	<title><![CDATA[DBT – Bioinformatics Industrial Training Programme (BIITP) 2016 – 17]]></title>
	<description><![CDATA[<p>BIITP is a programme of Department of Biotechnology (DBT), Ministry of Science and Technology, Government of India, managed by Biotech Consortium India Limited (BCIL).The objective of BIITP is to provide an opportunity to bioinformatics students to acquire practical skills and experience by working on projects alongside industry experts as well as to provide an opportunity for the industry to identify potential employees.</p><p><strong>DBT Invites online applications from the bioinformatics&nbsp;students and requisitions from biotech/bioinformatics companies.</strong></p><p><strong>Biotech Industry</strong>&nbsp;:</p><p>Biotech/Bioinformatics companies interested to provide hands on industrial training to the students of Bioinformatics under BIITP may apply online. The companies would have no obligation towards any payments to trainees. The companies would be paid bench fee to cover expenses towards training. Trainees would be provided to companies subject to availability.</p><p><strong>Attn: Bioinformatics Students</strong></p><p>Bioinformatics students interested in training in biotech / bioinformatics companies may apply online.&nbsp;<strong>Stipend of Rs. 10,000/- per month</strong>&nbsp;will be paid to candidates placed for training. The candidates will be selected for training through an interview.</p><p><strong>Eligiblity</strong>&nbsp;:</p><p>a) B.E /B.Tech./M.Sc./M.Tech./Advanced Post Graduate Diploma in Bioinformatics from an Indian recognized university with minimum 55% marks or equivalent grade at highest degree/diploma completed in the year 2015 or 2016 are only eligible to apply.</p><p>b) The Advanced Post Graduate diploma should be of at least one year duration after graduation.</p><p>c)&nbsp; Students whose result of last semester/final year is not declared can also apply mentioning their marks upto the semester/year upto which result declared. The final result with original mark sheet(s) of all the semesters/years will have to be produced at the time of interview.</p><p><strong>Application Procedure</strong>&nbsp;:</p><p>The online application form is available below :</p><p><strong><a href="https://www.biotecnika.org/2016/07/dbt-bioinformatics-industrial-training-programme-biitp-2016-17/?xurl=%3A%2F%2Fwww.bcil.nic.in%2Fbiitp2016-17%2Fregistration1.asp" target="_blank">Application Form For Students (New User)</a></strong></p><p><strong><a href="https://www.biotecnika.org/2016/07/dbt-bioinformatics-industrial-training-programme-biitp-2016-17/?xurl=%3A%2F%2Fwww.bcil.nic.in%2Fbiitp2016-17%2Fregistration.asp%3FT1%3DCompany" target="_blank">Requisition form for companies (New User)</a></strong></p><p><strong><a href="https://www.biotecnika.org/2016/07/dbt-bioinformatics-industrial-training-programme-biitp-2016-17/?xurl=%3A%2F%2Fwww.bcil.nic.in%2Fbiitp2016-17%2Findex1.asp" target="_blank">Already registered User Click Here</a></strong></p><p>The following documents are to be sent to Mr. Manoj Gupta, Manager, Biotech Consortium India Limited, 5th floor, Anuvrat Bhawan, 210, Deen Dayal UpadhyayaMarg, New Delhi-110002.</p><p>More at&nbsp;http://www.bcil.nic.in/biitp2016-17/index.asp</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37982/raven-a-software-suite-for-matlab-that-allows-for-semi-automated-reconstruction-of-genome-scale-models</guid>
	<pubDate>Wed, 24 Oct 2018 22:38:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37982/raven-a-software-suite-for-matlab-that-allows-for-semi-automated-reconstruction-of-genome-scale-models</link>
	<title><![CDATA[RAVEN: a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models]]></title>
	<description><![CDATA[<p><span>The RAVEN (Reconstruction, Analysis and Visualization of Metabolic Networks) Toolbox 2 is a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models (GEMs). It makes use of published models and/or KEGG, MetaCyc databases, coupled with extensive gap-filling and quality control features. The software suite also contains methods for visualizing simulation results and omics data, as well as a range of methods for performing simulations and analyzing the results. The software is a useful tool for system-wide data analysis in a metabolic context and for streamlined reconstruction of metabolic networks based on protein homology.</span></p><p>Address of the bookmark: <a href="https://github.com/SysBioChalmers/RAVEN" rel="nofollow">https://github.com/SysBioChalmers/RAVEN</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28592/bioinformatics-technical-position-at-cdac-pune-india</guid>
  <pubDate>Mon, 01 Aug 2016 03:36:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Technical Position at CDAC Pune - India]]></title>
  <description><![CDATA[
<p>CDAC Pune Recruitment 2016 – Apply Online for Technical Positions: Department of Information Technology under the Ministry of Communications and Information Technology, Government of India, Centre for Development of Advanced Computing (C-DAC), Pune has advertised notification for the recruitment of Technical vacancies for for PwD candidates n direct recruitment basis. Eligible candidates can apply Online from 27-07-2016 at 10.00 AM to 31-08-2016 at 18.00 PM.. Other information like age limit, educational qualification, selection process &amp; how to apply are given below… </p>

<p>CDAC Pune Vacancy Details:<br />Total No. of Posts: 23 </p>

<p>Name of the Post: Technical </p>

<p>Name of the Discipline:<br />A. Computer Science/ Information Technology and Allied disciplines. </p>

<p>B.Electronics Communications/ Electrical/ Telecommunication/Instrumentation &amp; Control/ Medical Electronics/ Power Electronics/ VLSI &amp; Embedded System and Allied disciplines. </p>

<p>C.Biotechnology/ Bioinformatics/ Health informatics/ Geoinformatics/ Meteorology/ Environmental Science/ Ocean Sciences/Oceanography/Environmental Engineering </p>

<p>1. Visually Impaired: 09 Posts </p>

<p>2. Hearing Impaired: 08 Posts </p>

<p>3. Orthopedically Impaired: 06 Posts </p>

<p>Educational Qualification : Candidates should possess Graduation in relvany discpline with relevant experience. </p>

<p>Selection Process: Candidates will be selected based on applicants performance in interview. </p>

<p>How to Apply: Eligible candidates can apply online through the website www.cdac.in from 27-07-2016 at 10.00 AM to 31-08-2016 at 18.00 PM. </p>

<p>More at http://www.cdac.in/index.aspx?id=current_jobs</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41820/shinygo-v061-gene-ontology-enrichment-analysis-more</guid>
	<pubDate>Wed, 03 Jun 2020 08:00:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41820/shinygo-v061-gene-ontology-enrichment-analysis-more</link>
	<title><![CDATA[ShinyGO v0.61: Gene Ontology Enrichment Analysis + more]]></title>
	<description><![CDATA[<p>2/3/2020: Now published by&nbsp;<a href="https://doi.org/10.1093/bioinformatics/btz931" target="_blank">Bioinformatics.</a></p>
<p>11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more.</p>
<p>5/20/2019: V.0.60, Annotation database updated to Ensembl 96. New bacterial and fungal genomes based on STRING-db! Just paste your gene list to get enriched GO terms and othe pathways for over 315 plant and animal species, based on annotation from Ensembl (Release 96), Ensembl plants (R. 43) and Ensembl Metazoa (R. 43). An additional 2031 genomes (including bacteria and fungi) are annotated based on STRING-db (v.10). In addition, it also produces KEGG pathway diagrams with your genes highlighted, hierarchical clustering trees and networks summarizing overlapping terms/pathways, protein-protein interaction networks, gene characterristics plots, and enriched promoter motifs.&nbsp;</p><p>Address of the bookmark: <a href="http://bioinformatics.sdstate.edu/go/" rel="nofollow">http://bioinformatics.sdstate.edu/go/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42490/bioinformatics-scientist-%E2%80%93-icmr-computational-genomics-centre</guid>
  <pubDate>Sat, 26 Dec 2020 10:18:29 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Scientist – ICMR Computational Genomics Centre]]></title>
  <description><![CDATA[
<p>ICMR invites online applications, from Indian Citizens, up to 8th January 2020 till 5:30 PM to fill up the following post to be filled purely on a temporary basis under “ICMR Computational Genomics Centre” under Dr. Harpreet Singh, Head, Division of Biomedical Informatics (BMI), ICMR HQRS, New Delhi 110029.<br />The Terms &amp; Conditions for the post are as follows:</p>

<p>a) Scientist-B – UR (2 posts-Bioinformatics) on consolidated salary of Rs.48,000/- pm + HRA</p>

<p>b) Scientist C – UR (1 post -Bioinformatics) on consolidated salary of Rs. 51,000 pm+ HRA</p>

<p>c) Scientist B- UR (2 post-Statistics) on a consolidated salary of Rs.48,000/- pm +HRA</p>

<p>d) Computer Programmer 1 post UR &amp; 1 post SC on a consolidated salary of Rs. 32,500/- pm</p>

<p>e) Research Assistant -UR 1 post on a consolidated salary of Rs. 31,000/- pm</p>

<p>More at https://projectjobs.icmr.org.in/sccbioinformatics/uploads/recruitment/Adv_BMI_24122020.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44188/understanding-go-analysis</guid>
	<pubDate>Wed, 08 Feb 2023 04:22:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44188/understanding-go-analysis</link>
	<title><![CDATA[Understanding GO analysis]]></title>
	<description><![CDATA[<p>The confusion about gene ontology and gene ontology analysis can start right from the term itself. There are actually two different entities that are commonly referred to as gene ontology or &ldquo;GO&rdquo;:</p>
<ol>
<li>the&nbsp;<span>ontology itself</span>, which is a set of terms with their precise definitions and defined relationships between them, and</li>
<li>the&nbsp;<span>associations between gene products and GO terms</span>, which are used to capture the existing knowledge about what each gene is known to do.</li>
</ol>
<p>But the term gene ontology, or GO, is commonly used to refer to both, which is sometimes a source of potential confusion. In order to avoid this, here we will use the term &ldquo;GO ontology&rdquo; to describe the set of terms and their hierarchical structure and &ldquo;GO annotations&rdquo; to describe the set of associations between genes and GO terms.</p>
<p>There are 3 types of terms, or domains if you wish, in the gene ontology:</p>
<ul>
<li>Biological Processes (BP)</li>
<li>Molecular Functions (MF)</li>
<li>Cellular Components (CC)</li>
</ul><p>Address of the bookmark: <a href="https://advaitabio.com/faq-items/understanding-gene-ontology/" rel="nofollow">https://advaitabio.com/faq-items/understanding-gene-ontology/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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