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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31353?offset=1190</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/42664/common-bioinformatics-interview-questions</guid>
	<pubDate>Sat, 23 Jan 2021 06:07:50 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/42664/common-bioinformatics-interview-questions</link>
	<title><![CDATA[Common Bioinformatics Interview Questions !]]></title>
	<description><![CDATA[<p>The possibility of an interview for a bioinformatics position in the life sciences may be very disquieting, but the same concerns emerge time and again in my experience. So, it is exceedingly worthwhile to plan for future bioinformatics interview questions. Doing this will really give you the advantage in obtaining the position.</p><p>The following 5 questions are those that I have heard many times during the job-search process. There is no reason for not planning responses in such situations.</p><p><strong>1. Tell Us About Yourself</strong><br />This is a very typical opener in interviews. It's a perfect question to ask, and getting something planned will really help you concentrate and ease in the conversation. However, you need to make sure that your response is applicable to the job you're interviewing.<br />It's probably better to keep your answer professional. Try to include these in the answer as well: where did your love of science and bioinformatics come from? How the heck did you end up in this field? Why programming and scripting ?</p><p><strong>2. What is your plan for your bioinformatics career? / How do you look at yourself in five years? / How are your personal objectives to accomplish these goals / What are the plan for your research fundings ?</strong></p><p>Your CV/resume has already impressed the selection panel if you have been invited for an interview. The questions from the bioinformatics interview team provide an incentive for you to market yourself and illustrate the work in question with the most appropriate knowledge.</p><p><strong>3. What do you understand about the job description/What would your suggested research path be if you were a successful candidate?</strong><br />Summarize the specifics of the advertised bioinformatics position in your own words. Follow on with some suggestions of how you want to extend your research and create your own projects within the community.</p><p><strong>4. Will you work as a group or do you want to work on your own?</strong><br />This requirement can vary from jobs to job, so when addressing, be alert. A company/research PI may need a bioinformatician that is able to work on a single project autonomously, or they may need a person who can help direct and organize a team. In your response, refer to the job description.</p><p><strong>5. What particular methods have you used to date with your experiments?</strong><br />You might have experience with all the laboratory techniques described in the job description, but stress the ones you highly experienced with. Highlight your professional abilities and stress that you are extremely capable of mastering new techniques with others ...</p><p>At the end of the day, remember that you're questioning the jury as well as they're interviewing you. You will ought to think of any questions you would like the interview panel to pose. This indicates that you have done your homework and serious about the position.</p><p>All the best for your future job interview.</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/2759/dynamic-programming-alignment</guid>
	<pubDate>Thu, 22 Aug 2013 09:38:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/2759/dynamic-programming-alignment</link>
	<title><![CDATA[Dynamic Programming Alignment]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/EWJnDMKBEv0" frameborder="0" allowfullscreen></iframe>lecture 9, Chem. C100, Spring 2013, UCLA]]></description>
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/43044/kanthida-lab</guid>
  <pubDate>Wed, 28 Apr 2021 02:27:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Kanthida Lab !]]></title>
  <description><![CDATA[
<p>Research Interest: </p>

<p>Bioinformatics </p>

<p>High-throughput and high-dimensional data analysis</p>

<p>Microbiome data analysis (Main focus)</p>

<p>Next-generation and third-generation sequencing data analysis for genomics</p>

<p>Gene expression data analysis</p>

<p>Machine learning for biological data</p>

<p>Biomarkers identification </p>

<p>Database and web-application for biological data</p>

<p>More at <br />https://sites.google.com/mail.kmutt.ac.th/kanthida-k/home?authuser=0</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/4178/phd-position-in-biochemistry-towards-bioinformatics-at-the-department-of-biochemistry-and-biophysics</guid>
  <pubDate>Tue, 03 Sep 2013 06:09:03 -0500</pubDate>
  <link></link>
  <title><![CDATA[PhD position in biochemistry towards bioinformatics at the Department of Biochemistry and Biophysics.]]></title>
  <description><![CDATA[
<p>PhD position in biochemistry towards bioinformatics at the Department of Biochemistry and Biophysics. Reference number: SU FV-2293-13. Deadline for application: September 10, 2013.</p>

<p>Project title: Functional Inference from Domain Architecture and Orthology</p>

<p>Requirements</p>

<p>To be accepted as a PhD student, credits corresponding to four years of full-time studies at the undergraduate level are required, including credits corresponding to at least two years of fulltime studies in chemistry, life sciences or physics, depending on the program. The credits should include courses at the advanced level (second cycle) corresponding to one year and of these one semester should be a degree thesis. In order to facilitate the evaluation of merits and suitability for the PhD studies the curriculum vitae (CV) should contain information about the extent and focus of the academic studies. The quantity (as part of an academic year) and the quality mark of courses in chemistry and physics are of particular interest. The title, number of credits and the length in full-time months of undergraduate thesis and project work, should be specified.</p>

<p>Information</p>

<p>More information about the project can be provided by the project leader. General information about the PhD training program may be requested from the director of graduate studies, Stefan Nordlund, stefan@dbb.su.se or from Lena Mäler, Head of Department (prefekt), lenam@dbb.su.se</p>

<p>Further information on the web:</p>

<p>The Department of Biochemistry and Biophysics: www.dbb.su.se</p>

<p>Stockholm University: www.su.se/english</p>

<p>Faculty of Science: www.science.su.se/english</p>

<p>The handbook for postgraduate students: www.doktorandhandboken.nu/english</p>

<p>Application The application should contain a personal letter (a letter of intent explaining why you are interested in the specific project, why you are interested in studying for a PhD, what you hope to accomplish during your PhD studies, and what skills you can bring to this project), a curriculum vitae, a list of two persons who may act as referees (with telephone numbers and e-mail addresses), copies of degree certificates and transcripts of academic records, and a copy of your undergraduate thesis and articles, if any.</p>

<p>In order to apply for this position, please use the Stockholm University web-based application form (where it is possible to select language):</p>

<p>To the application form for this position.</p>

<p>Welcome with your application no later than September 10, 2013.</p>

<p>Project leader: Erik Sonnhammer, Erik.Sonnhammer@sbc.su.se,<br />www.sonnhammer.sbc.su.se</p>

<p>Advertisement: http://www.su.se/english/about/vacancies/phd-studies/phd-position-in-biochemistry-towards-bioinformatics-1.143446</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43323/biostarhandbook</guid>
	<pubDate>Fri, 27 Aug 2021 01:31:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43323/biostarhandbook</link>
	<title><![CDATA[biostarhandbook]]></title>
	<description><![CDATA[<p>Nice book collection for bioinformatician ... highly recommended.</p><p>Address of the bookmark: <a href="https://www.biostarhandbook.com/" rel="nofollow">https://www.biostarhandbook.com/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/2931/senior-bioinformatics-programmer-and-srf-at-biotech-park-lucknow</guid>
  <pubDate>Fri, 23 Aug 2013 04:55:51 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Bioinformatics Programmer and SRF at  BIOTECH PARK Lucknow]]></title>
  <description><![CDATA[
<p>BIOTECH PARK</p>

<p>Advt. No. 3 (8)/BP/13</p>

<p>A walk-in-interview will be held in the Biotech Park Office at Sector G, Jankipuram, Kursi Road, Lucknow (U.P.) August 27, 2013 at 11.00 a.m. for the following posts of DBT sponsored project tenable at Biotech Park. Interested candidates fulfilling the requisite qualifications, experience and age as given below, may appear on the date of interview, before the Selection Committee. The candidate will have to join immediately.</p>

<p>INTERVIEW ON August 27, 2013 at 11.00 A.M.</p>

<p>2. SENIOR PROGRAMMER (ONE POST)</p>

<p>a)  Educational Qualification M.Sc. Bioinformatics with minimum 60% marks with two years of relevant experience or B.Tech. Bioinformatics or Biotechnology with minimum 60% marks with two years experience in Bioinformatics.</p>

<p>b) Job Requirement Development of databases in multi user environment and application softwares, maintenance of website, Drug designing and QSAR study etc.</p>

<p>c) Desirable Knowledge of Bioinformatics tools, Windows, Linux, C++, JAVA / JAVA Script, Visual Basic, CGI, DBMS/RDBMS and HTML. Experience in various domains of bioinformatics such as structure based drug designing, Newtonian dynamics and OSAR studies.</p>

<p>d)  Age  Below 35 years (as on the date of interview)</p>

<p>e) Emoluments  Rs. 12,000/- per month fixed.</p>

<p>Appointment will be made initially for one year extendable on satisfactory performance till the duration of the project.</p>

<p>3. SENIOR RESEARCH FELLOW: (ONE POST)</p>

<p>a)  Educational Qualification M.Sc. in Biotechnology/Botany with minimum 60% marks and knowledge of handling database &amp; database searching.</p>

<p>b) Essential Qualification Expertise in windows, Microsoft excel.</p>

<p>c) Desirable Good knowledge of statistical software packages like SPSS.</p>

<p>d) Age Below 35 years ( as on the date of interview)</p>

<p>e) Job Requirement: Management of database &amp; website in multi user environment, computation of biological field data and generation of reports.</p>

<p>f) Emoluments</p>

<p>18000+ HRA for Net/GATE qualified<br />14000+ HRA for others</p>

<p>The appointment will be made till the duration of project.</p>

<p>Note: All the candidates should report for interview on or before 10.45 A.M.</p>

<p>General Conditions</p>

<p>    The aforesaid positions are purely temporary and do not give the incumbent any right whatsoever for appointment on regular basis.<br />    More Advertisement: http://www.biotechpark.org.in/html/jobs%20in%20Biotech%20Park/Job_2013_04.htm</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44516/16srna-database-download</guid>
	<pubDate>Wed, 24 Apr 2024 04:33:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44516/16srna-database-download</link>
	<title><![CDATA[16sRNA Database Download]]></title>
	<description><![CDATA[<p>Downloading 16S rRNA databases can be crucial for various bioinformatics analyses, especially in microbiome research. However, it's important to note that databases can vary based on your specific needs, such as the taxonomic coverage you require or the type of analysis you're performing. Here's a general guideline on how you can obtain 16S rRNA databases:</p><ol>
<li>
<p><span>NCBI (National Center for Biotechnology Information)</span>:</p>
<ul>
<li>NCBI provides various databases related to genetic information, including 16S rRNA sequences.</li>
<li>You can access the 16S ribosomal RNA sequences from NCBI's Nucleotide database (<a href="https://www.ncbi.nlm.nih.gov/nucleotide/" target="_new">https://www.ncbi.nlm.nih.gov/nucleotide/</a>).</li>
<li>Perform a search using keywords like "16S rRNA" or specific bacterial names to find relevant sequences.</li>
<li>You can download sequences individually or in batches using the provided tools.</li>
</ul>
</li>
<li>
<p><span>GreenGenes</span>:</p>
<ul>
<li>GreenGenes is a widely used 16S rRNA gene sequence database.</li>
<li>You can access it at <a target="_new">http://greengenes.secondgenome.com/</a>.</li>
<li>GreenGenes provides precompiled databases for various purposes, including classification, alignment, and phylogenetic analysis.</li>
</ul>
</li>
<li>
<p><span>SILVA</span>:</p>
<ul>
<li>SILVA (<a href="https://www.arb-silva.de/" target="_new">https://www.arb-silva.de/</a>) is another comprehensive database for ribosomal RNA (rRNA) sequences.</li>
<li>It covers not only 16S rRNA but also other ribosomal RNA sequences.</li>
<li>SILVA provides precompiled databases for various purposes, including taxonomic classification and alignment.</li>
</ul>
</li>
<li>
<p><span>Ribosomal Database Project (RDP)</span>:</p>
<ul>
<li>RDP (<a target="_new">http://rdp.cme.msu.edu/</a>) is a curated database that offers 16S rRNA sequences.</li>
<li>It provides tools for sequence analysis and classification.</li>
<li>You can download sequences and taxonomy information from their website.</li>
</ul>
</li>
<li>
<p><span>QIIME (Quantitative Insights Into Microbial Ecology)</span>:</p>
<ul>
<li>QIIME (<a href="https://qiime2.org/" target="_new">https://qiime2.org/</a>) is a widely used bioinformatics platform for microbiome analysis.</li>
<li>It provides tools for analyzing microbial communities, including processing 16S rRNA sequences.</li>
<li>QIIME often includes its own preprocessed 16S rRNA databases that can be used for analysis within the platform.</li>
</ul>
</li>
</ol><p>Before downloading any database, make sure to read the terms of use and citation requirements, as some databases may have specific usage policies. Additionally, consider the compatibility of the database with your analysis pipeline and software tools.</p><p>&nbsp;</p><p>NCBI 16s RNA database location&nbsp;ftp://ftp.ncbi.nih.gov/blast/db/16SMicrobial.tar.gz</p>]]></description>
	<dc:creator>LEGE</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/4042/a-brief-introduction-to-genetics</guid>
	<pubDate>Wed, 28 Aug 2013 06:49:38 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/4042/a-brief-introduction-to-genetics</link>
	<title><![CDATA[A Brief Introduction to Genetics]]></title>
	<description><![CDATA[<iframe src="http://player.vimeo.com/video/20898800?byline=0" width="" height="" frameborder="0" webkitAllowFullScreen allowFullScreen></iframe>A Brief Introduction to Genetics is a short documentary film that explores the history of genetics & genomics and the underlying concepts that provide the foundational knowledge that today's research is built upon. The film describes the history of genetics, from Gregor Mendel, to concepts such as DNA and the genetic code. Having introduced the fundamental ideas of genetics, the film moves on to describe the current techniques used to study genetics. Finally, the film explores the connection of these core concepts to genomics and bioinformatics.]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/4590/tigers-genome-sequenced</guid>
	<pubDate>Tue, 17 Sep 2013 16:48:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4590/tigers-genome-sequenced</link>
	<title><![CDATA[Tigers genome sequenced]]></title>
	<description><![CDATA[<p>Fifteen scientists led by Dr Jong Bhak of Genome Research Foundation, South Korea, decoded as many as 3 billion nucleotides (organic molecules that form the basic building blocks of nucleic acids, such as DNA). They identified 20,000 genes related to various functions of the tiger.&nbsp;</p><p>The biggest and perhaps most fearsome of the world's big cats, the tiger, shares 95.6 percent of its DNA with humans' cute and furry companions, domestic cats.</p><p>The new research showed that big cats have genetic mutations that enabled them to be carnivores. The team also identified mutations that allow snow leopards to thrive at high altitudes.</p><p>Reference:</p><p><a href="http://www.nbcnews.com/science/your-cat-ferocious-tigers-share-lot-95-6-percent-their-4B11182690">http://www.nbcnews.com/science/your-cat-ferocious-tigers-share-lot-95-6-percent-their-4B11182690</a></p><p><a href="http://timesofindia.indiatimes.com/home/environment/flora-fauna/Gene-mapping-of-tiger-completed/articleshow/22671681.cms">http://timesofindia.indiatimes.com/home/environment/flora-fauna/Gene-mapping-of-tiger-completed/articleshow/22671681.cms</a></p><p>Paper:</p><p><a href="http://www.nature.com/ncomms/2013/130917/ncomms3433/full/ncomms3433.html">http://www.nature.com/ncomms/2013/130917/ncomms3433/full/ncomms3433.html</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4108/tijana-milenkovic-lab</guid>
  <pubDate>Fri, 30 Aug 2013 06:45:20 -0500</pubDate>
  <link></link>
  <title><![CDATA[Tijana Milenkovic Lab]]></title>
  <description><![CDATA[
<p>Complex networks and network mining: developing graph theoretic, mathematical, and computational algorithms for efficient extraction of function from topology of complex real-world networks, such as biological, social, and technological networks.</p>

<p>Computational and systems biology: studying the interplay between network topology and biological function, disease, and evolution in molecular (e.g., protein-protein interaction) networks.</p>

<p>Computational chemistry: protein folding; computational drug discovery and design.</p>

<p>Synthetic biology.</p>

<p>More at http://www.cse.nd.edu/~tmilenko/index.html</p>
]]></description>
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