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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31375?offset=1000</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28577/research-associate-computer-sciences-recruitment-in-national-bureau-of-plant-genetic-resources</guid>
  <pubDate>Thu, 28 Jul 2016 04:39:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate (Computer Sciences) recruitment in National Bureau of Plant Genetic Resources]]></title>
  <description><![CDATA[
<p>Research Associate (Computer Sciences) recruitment in National Bureau of Plant Genetic Resources</p>

<p>Project: Indo-UK Centre for improvement of Nitrogen use efficiency in wheat Dr. Soma S. Marla, Pr. Scientist (Bioinformatics), Division of Genomic Resources, ICAR, NBPGR, ND.</p>

<p>Qualification: Ph.D. Degree in Computer Sciences/Bioinformatics OR 1. First class Master’s degree in any discipline of Plant Sciences with specialization in Computer Sciences/ Bioinformatics having 1st division or 60% marks or equivalent overall grade point average with at least two years of research experience as evidenced from Fellowship/ Associate ship. 2. NET qualification is essential for the candidates with 3+2 years B.Sc.+ M.Sc. Desirable: Demonstrated experience &amp; skills in database design, management, UNIX OS, in NGS data analysis. Experience substantiated by publications of high quality will be preferred.</p>

<p>No.of Post: 1</p>

<p>Pay Scale: Rs. 40,000 (Ph.D)/ Rs + 30 % HRA; Rs.38,000 ( Masters Degree 0 + 30 % HRA).</p>

<p>Age Limit : below 40 years for RA position<br />How to apply<br />Applicants for RA post should send their complete CV (Advance copy of the application may be sent by email to :soma.marla@icar.gov.in or ssmarl@yahoo.com, should enclose the copy of the research publications; one page summary of their achievement relevant to the post applied for; and should enclose two reference letters (one must be from the person with whom worked latest). Shortlisted candidate will be intimated for interview by email.</p>

<p>The candidates who wish to attend the walk-in interview are requested to bring with them five copies of the CV (one copy with photograph) as per the format given below. Also, the candidates should bring the original documents such as degree certificates, marks sheets, publications, thesis, experience certificate etc. for verification. </p>

<p>Date of Interview: 17.8.2016.</p>

<p>More at http://www.nbpgr.ernet.in/Downloadfile.aspx?EntryId=7133</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37982/raven-a-software-suite-for-matlab-that-allows-for-semi-automated-reconstruction-of-genome-scale-models</guid>
	<pubDate>Wed, 24 Oct 2018 22:38:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37982/raven-a-software-suite-for-matlab-that-allows-for-semi-automated-reconstruction-of-genome-scale-models</link>
	<title><![CDATA[RAVEN: a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models]]></title>
	<description><![CDATA[<p><span>The RAVEN (Reconstruction, Analysis and Visualization of Metabolic Networks) Toolbox 2 is a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models (GEMs). It makes use of published models and/or KEGG, MetaCyc databases, coupled with extensive gap-filling and quality control features. The software suite also contains methods for visualizing simulation results and omics data, as well as a range of methods for performing simulations and analyzing the results. The software is a useful tool for system-wide data analysis in a metabolic context and for streamlined reconstruction of metabolic networks based on protein homology.</span></p><p>Address of the bookmark: <a href="https://github.com/SysBioChalmers/RAVEN" rel="nofollow">https://github.com/SysBioChalmers/RAVEN</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28819/research-project-at-iit-madras</guid>
  <pubDate>Wed, 17 Aug 2016 03:26:06 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Project at IIT, Madras]]></title>
  <description><![CDATA[
<p>Two project positions are available to work on (i) molecular modeling and molecular dynamics simulations and (ii) development of bioinformatics databases and tools at Protein Bioinformatics Lab, Department of Biotechnology, IIT Madras.</p>

<p>Duration : Initially for a period of one year. Extendable based on the performance.</p>

<p>Qualification: (i) MSc in Bioinformatics, Biotechnology, Physics, Biophysics, Biochemistry,Computer Science with NET (UGC/CSIR/GATE/BINC/INSPIRE etc) qualification. (OR) (ii) M. Tech in Bioinformatics, Biotechnology</p>

<p>Additional qualification: Programming skills</p>

<p>Candidates who fulfill the requirements of IIT have the possibility to register for PhD.</p>

<p>Fellowship: Rs.25,000 and HRA.</p>

<p>Applicants are encouraged to send the CV to the coordinator by postal mail and e-mail. The deadline to receive the applications is 31st August 2016. The project coordinator has the discretion to restrict the number of candidates to be called for interview to a reasonable limit on the basis of qualifications and experience higher than the minimum prescribed in the announcement.</p>

<p>Project Co-ordinator:</p>

<p>Dr. M. Michael Gromiha <br />Department of Biotechnology <br />Indian Institute of Technology Madras <br />Chennai 600036 <br />Email: gromiha@iitm.ac.in</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41820/shinygo-v061-gene-ontology-enrichment-analysis-more</guid>
	<pubDate>Wed, 03 Jun 2020 08:00:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41820/shinygo-v061-gene-ontology-enrichment-analysis-more</link>
	<title><![CDATA[ShinyGO v0.61: Gene Ontology Enrichment Analysis + more]]></title>
	<description><![CDATA[<p>2/3/2020: Now published by&nbsp;<a href="https://doi.org/10.1093/bioinformatics/btz931" target="_blank">Bioinformatics.</a></p>
<p>11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more.</p>
<p>5/20/2019: V.0.60, Annotation database updated to Ensembl 96. New bacterial and fungal genomes based on STRING-db! Just paste your gene list to get enriched GO terms and othe pathways for over 315 plant and animal species, based on annotation from Ensembl (Release 96), Ensembl plants (R. 43) and Ensembl Metazoa (R. 43). An additional 2031 genomes (including bacteria and fungi) are annotated based on STRING-db (v.10). In addition, it also produces KEGG pathway diagrams with your genes highlighted, hierarchical clustering trees and networks summarizing overlapping terms/pathways, protein-protein interaction networks, gene characterristics plots, and enriched promoter motifs.&nbsp;</p><p>Address of the bookmark: <a href="http://bioinformatics.sdstate.edu/go/" rel="nofollow">http://bioinformatics.sdstate.edu/go/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28829/jrf-bioinformatics-at-manit-india</guid>
  <pubDate>Thu, 18 Aug 2016 02:48:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at MANIT, India]]></title>
  <description><![CDATA[
<p>Advt. No.: Maths./577/2016 Date: 12/08/2016<br />JRF Bioinformatics Job Position in Maulana Azad National Institute of Technology (MANIT) purely temporary basis<br />Project Title : “Computational Approach to Study Complex Biological Network of Diseases using Molecular Data”<br />Essential Qualifications &amp; experience: M.Tech in Bioinformatics/ Computational System biology/Computer Science or M.Sc. in Bio informatics/Biotechnology/Mathematics/Statistics from recognized University/ Institute. Preference will be given to GATE/NET qualified candidates.<br />No. of Post : 01<br />Fellowship: INR 12000<br /> <br />How to apply<br />The duly completed application on prescribed format along with copies of supporting documents must reach to: office of the Dr. Usha Chouhan, Principal Investigator, Department of Mathematics, Bioinformatics &amp; Computer Applications, Maulana Azad National Institute of Technology, Bhopal-462003 on or before 31/08/2016. A soft copy of the application should also be sent to ycchouhan@gmail.com  email address of Principal Investigator.</p>

<p>More at http://www.web.manit.ac.in/Year%202016/JRF/walk%20in.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44188/understanding-go-analysis</guid>
	<pubDate>Wed, 08 Feb 2023 04:22:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44188/understanding-go-analysis</link>
	<title><![CDATA[Understanding GO analysis]]></title>
	<description><![CDATA[<p>The confusion about gene ontology and gene ontology analysis can start right from the term itself. There are actually two different entities that are commonly referred to as gene ontology or &ldquo;GO&rdquo;:</p>
<ol>
<li>the&nbsp;<span>ontology itself</span>, which is a set of terms with their precise definitions and defined relationships between them, and</li>
<li>the&nbsp;<span>associations between gene products and GO terms</span>, which are used to capture the existing knowledge about what each gene is known to do.</li>
</ol>
<p>But the term gene ontology, or GO, is commonly used to refer to both, which is sometimes a source of potential confusion. In order to avoid this, here we will use the term &ldquo;GO ontology&rdquo; to describe the set of terms and their hierarchical structure and &ldquo;GO annotations&rdquo; to describe the set of associations between genes and GO terms.</p>
<p>There are 3 types of terms, or domains if you wish, in the gene ontology:</p>
<ul>
<li>Biological Processes (BP)</li>
<li>Molecular Functions (MF)</li>
<li>Cellular Components (CC)</li>
</ul><p>Address of the bookmark: <a href="https://advaitabio.com/faq-items/understanding-gene-ontology/" rel="nofollow">https://advaitabio.com/faq-items/understanding-gene-ontology/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28926/scientist-at-advanced-centre-for-treatment-research-and-education-in-cancer-navi-mumbai-maharashtra</guid>
  <pubDate>Tue, 30 Aug 2016 04:16:15 -0500</pubDate>
  <link></link>
  <title><![CDATA[Scientist at Advanced Centre for Treatment, Research and Education in Cancer - Navi Mumbai, Maharashtra]]></title>
  <description><![CDATA[
<p>Scientist <br />Advanced Centre for Treatment, Research and Education in Cancer - Navi Mumbai, Maharashtra<br />Scientist (One position) <br />Project: Bioinformatics centre DBT- Sub-DIC at ACTREC <br />Funding agency: DBT Grant No.232 </p>

<p>Duration of the Project: Six Months from the date of appointment can be extended further for six months <br />Essential Qualification and Experience: 1st Class Masters Degree in Bioinformatics or Life Sciences equivalent degree from a recognized University with 4 years R&amp;D experience in Bioinformatics or relevant subjects from recognized institutes. <br />OR <br />Ph.D. degree in Bioinformatics or Life Sciences from recognized University. <br />M.Sc. degree obtained after a one year course will not be considered. <br />Experience: Research/teaching experience in Bioinformatics or relevant subjects form recognized Institute(s). </p>

<p>More at http://www.actrec.gov.in/data%20files/Vacancies/2016/AV-scin-stud-trainee-6-Sept-16.docx</p>
]]></description>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44620/diy-transcriptomics</guid>
	<pubDate>Wed, 31 Jul 2024 01:19:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44620/diy-transcriptomics</link>
	<title><![CDATA[DIY Transcriptomics]]></title>
	<description><![CDATA[<p><span>A semester-long course covering best practices for the analysis of high-throughput sequencing data from gene expression (RNA-seq) studies, with a primary focus on empowering students to be independent in the use of lightweight and open-source software using the R programming language and the Bioconductor suite of packages. This course follows a hybrid format in which online lectures are paired with in-person labs where students participate in hands-on, live coding exercises using real &lsquo;omic datasets. The course is focused on datasets and topics central to infectious disease research, immunology, and One-Health, but the concepts and approaches covered are applicable to any genomic study.</span></p>
<p>https://diytranscriptomics.com</p><p>Address of the bookmark: <a href="https://diytranscriptomics.com" rel="nofollow">https://diytranscriptomics.com</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29262/bioinformatics-jobs-at-chittaranjan-national-cancer-institute</guid>
  <pubDate>Thu, 29 Sep 2016 09:36:33 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics jobs at Chittaranjan National Cancer Institute]]></title>
  <description><![CDATA[
<p>Chittaranjan National Cancer Institute Advertisement No.497/2016 Invites Applications For Senior Scientific Officer, Gr. II </p>

<p>Note: Experience in the following field required: Molecular cancer cytogenetic and genetic toxicology Molecular drug Designing and targeted therapy Cancer genomics, proteomics, bioinformatics and next generation sequencing Therapeutic stem cell research and gene therapy Molecular cancer immunology and immunotherapy Molecular epidemiology Tumor endocrinology Translation research Ultra structural/tissue engg/development biology research Virus and cancer Molecular pathology No. of Posts: 11 (Eleven), (SC-1, OBC-3, UR-7) </p>

<p>Location: Kolkata (Calcutta) Salary: Rs.15600-39100 + Grade, Pay Rs.5400/- </p>

<p>For details kindly refer to the Employment News dated 24-30 September, 2016 and in the Institute’s Website: http://www.cnci.org.in </p>

<p>Last date for receipt of applications is 30 days from the date of notification in the Employment News. Director Chittaranjan National Cancer Institute 378, S.P. </p>

<p>Institute’s Website: http://www.cnci.org.in</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44900/pegas-a-comprehensive-bioinformatic-solution-for-pathogenic-bacterial-genomic-analysis</guid>
	<pubDate>Mon, 01 Sep 2025 01:18:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44900/pegas-a-comprehensive-bioinformatic-solution-for-pathogenic-bacterial-genomic-analysis</link>
	<title><![CDATA[PeGAS: A Comprehensive Bioinformatic Solution for Pathogenic Bacterial Genomic Analysis]]></title>
	<description><![CDATA[<p><span>This is PeGAS, a powerful bioinformatic tool designed for the seamless quality control, assembly, and annotation of Illumina paired-end reads specific to pathogenic bacteria. This tool integrates state-of-the-art open-source software to provide a streamlined and efficient workflow, ensuring accurate insights into the genomic makeup of pathogenic microbial strains.</span></p>
<p><span><img src="https://github.com/liviurotiul/PeGAS/raw/main/Features.png" alt="image" style="border: 0px;"></span></p><p>Address of the bookmark: <a href="https://github.com/liviurotiul/PeGAS" rel="nofollow">https://github.com/liviurotiul/PeGAS</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
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