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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31552?offset=1350</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/28439/binc-exam-preparation-tips</guid>
	<pubDate>Fri, 15 Jul 2016 20:53:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/28439/binc-exam-preparation-tips</link>
	<title><![CDATA[BINC exam preparation tips !!]]></title>
	<description><![CDATA[<p>How to prepare for <span>BINC (BioInformatics National Certification)</span>&nbsp;exam? What are the expected questions?</p><p>These are just a scant few of the common questions asked by bioinformatics students as they ready themselves for the next exam sitting. If you read the entire <a href="http://bioinformaticsonline.com/bookmarks/view/2334/binc-bioinformatics-national-certification-website-address">Syllabus</a> (and I know that everyone does), you will see a section devoted to study and exam techniques. The section discusses such broad concepts as motivation, scheduling, and retention. Upon reading this section, however, I find the "hints" to be too general. Much of the advice boils down to read, study, understand, and memorize the material. The techniques mentioned apply to everyone and thus the overall advice ends up as a broad overview of the learning process.</p><p>The idea behind this article is to give students ideas on different approaches and techniques in the preparation for exams. By providing various ways to prepare for the exam process, fascinated readers may gain some additional insight to help complement their studying methodology. There are, of course, many common themes expressed in this small empirical sample of students' study habits. The idea of note cards, memorization, and problem solving are frequently mentioned by all students. No matter what technique a candidate uses, it always takes a significant amount of time and personal resources to successfully complete the examination process.</p><p>1 Explain it in your own word</p><p>Your teacher or lecturer can explain something to you, you can learn it from a text book, your friends can study with you, even your own notes can explain it to you but all these explanations are of little use if, by the end, you can&rsquo;t explain what you have learned to yourself. The BINC exam looking for ability to write and explain the concept in your own word. You, therefore, need to illustrate in an exam to get top exam results, then you won&rsquo;t be happy with your end exam result. So don&rsquo;t just memorise and tick off the list &ndash; make sure you understand your theory.</p><p>2 Be an examiner yourself</p><p>Of course, depending on what you&rsquo;re studying, it may be quite difficult to get into a position to understand a concept, theory or other information you need to learn. Ask &lsquo;stupid&rsquo; question to yourself and train yourself for the worst! Embrace your curiosity, for as William Arthur Ward said: &ldquo;Curiosity is the wick in the candle of learning.&rdquo; Doing so will allow you to fill in the blanks and better prepare you for exams.</p><p>3 Quiz yourself</p><p>Once you feel you understand topic, it is important to test yourself regularly. Try yourself to replicate exam conditions as much as possible: turn your phone off, don&rsquo;t talk, time yourself etc. You can set yourself a study quiz or practice exam questions and, so long as you approach it with the right mindset, you can get a very good idea of how much you know. You gain a greater insight into where you stand in relation to what you&rsquo;ve studied so far.</p><p>4 Online study</p><p>Keeping the fact that, bioinformatics is ever changing subject, you might need to update yourself on timely basis. Don&rsquo;t feel obliged to just sit in front of a book with a highlighter; there are many different ways to improve your bioinformatics knowledge. Login and check almost all web servers and keep yourself updated, like how many genomes sequenced, sizes, techniques used, software names etc.</p><p>5 Study plan</p><p>In order to achieve exam success, you need to know what you want to achieve and focus on. That&rsquo;s why it is extremely important to set your Study Goals now and outline to yourself what you need to do. With your study goals in mind, you properly need to attention all subjects. It should be broad enough to allow you to add and change aspects but concise enough so you know you&rsquo;re covering each subject/topic as best you can at this point.</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34922/camsa-a-tool-for-comparative-analysis-and-merging-of-scaffold-assemblies</guid>
	<pubDate>Thu, 28 Dec 2017 09:10:26 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34922/camsa-a-tool-for-comparative-analysis-and-merging-of-scaffold-assemblies</link>
	<title><![CDATA[CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies]]></title>
	<description><![CDATA[<p>CAMSA &ndash; is a tool for&nbsp;<span>C</span>omparative&nbsp;<span>A</span>nalysis and&nbsp;<span>M</span>erging of&nbsp;<span>S</span>caffold&nbsp;<span>A</span>ssemblies, distributed both as a standalone software package and as Python library under the MIT license.</p>
<p>Main features:</p>
<ol>
<li>works with any number of scaffold assemblies in de-novo non-progressive fashion</li>
<li>allows to simultaneously work with scaffold assemblies obtained from any&nbsp;<em>in silico</em>&nbsp;and&nbsp;<em>in vitro</em>&nbsp;techniques, supporting multiple existing formats via built-in converters</li>
<li>creates an extensive report with several comparative quality metrics (both on assembly level and on the level of individual assembly points)</li>
<li>constructs a merged combined scaffold assembly</li>
<li>provides an interactive framework for a visual comparative analysis of the given assemblies</li>
</ol><p>Address of the bookmark: <a href="https://cblab.org/camsa/" rel="nofollow">https://cblab.org/camsa/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/28563/find-predicted-crispr-sites-using-ensembl</guid>
	<pubDate>Wed, 27 Jul 2016 03:15:59 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/28563/find-predicted-crispr-sites-using-ensembl</link>
	<title><![CDATA[Find predicted CRISPR sites using Ensembl]]></title>
	<description><![CDATA[<p>Did you know that you can now use Ensembl to help design your CRISPR experiments? Just turn on the brand new track that shows you the CRISPR sites that have been predicted by the WGE group (<a href="http://www.sanger.ac.uk/science/tools/wge" target="_blank">http://www.sanger.ac.uk/science/tools/wge</a>)</p><p><img src="http://www.ensembl.info/wp-content/uploads/2016/07/Screen-Shot-2016-07-22-at-13.04.33.png" width="1400" height="544" alt="image" style="border: 0px;"></p><p>Find out more on our blog:<br /><a href="http://www.ensembl.info/blog/2016/07/26/find-predicted-crispr-sites-using-ensembl/" target="_blank">http://www.ensembl.info/&hellip;/find-predicted-crispr-sites-usin&hellip;/</a></p><p>&nbsp;</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37233/rna-seq-analysis-workshop-course-materials</guid>
	<pubDate>Tue, 03 Jul 2018 08:14:14 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37233/rna-seq-analysis-workshop-course-materials</link>
	<title><![CDATA[RNA-seq Analysis Workshop Course Materials]]></title>
	<description><![CDATA[RNAseq can be roughly divided into two "types":

Reference genome-based - an assembled genome exists for a species for which an RNAseq experiment is performed. It allows reads to be aligned against the reference genome and significantly improves our ability to reconstruct transcripts. This category would obviously include humans and most model organisms but excludes the majority of truly biologically intereting species (e.g., Hyacinth macaw);

Reference genome-free - no genome assembly for the species of interest is available. In this case one would need to assemble the reads into transcripts using de novo approaches. This type of RNAseq is as much of an art as well as science because assembly is heavily parameter-dependent and difficult to do well.
In this lesson we will focus on the Reference genome-based type of RNA seq.

http://chagall.med.cornell.edu/RNASEQcourse/<p>Address of the bookmark: <a href="http://chagall.med.cornell.edu/RNASEQcourse/" rel="nofollow">http://chagall.med.cornell.edu/RNASEQcourse/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28818/senior-manager-bioinformatics-operations-at-rgcb-india</guid>
  <pubDate>Wed, 17 Aug 2016 03:19:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Manager (Bioinformatics Operations) at RGCB, India]]></title>
  <description><![CDATA[
<p>No. RGCB/ADVT/ADMN&amp;TECH/01/2016</p>

<p>August 17, 2016</p>

<p>RGCB invites applications for the following positions from Indian citizens with prescribed qualifications. Full details including job description, additional desirable qualifications, etc. are described below.</p>

<p>Code No. 1</p>

<p>Senior Manager (Bioinformatics Operations)</p>

<p>(To download application format, click here )</p>

<p>Scale of Pay</p>

<p>PB-3 Rs.15600-39100 + Grade Pay Rs.6600/-</p>

<p>Number of Positions</p>

<p>1 (General)</p>

<p>Minimum Qualifications</p>

<p>PhD in Bioinformatics, Biotechnology, Life Sciences or Computer Science applied to biological questions.<br />A minimum of 5 years documented experience in national or state government R&amp;D centers or state and central universities.<br />Track record of research funding and peer reviewed publications.<br />Proficiency using statistical analysis software or libraries such as R or Matlab.<br />Experience with a general scripting language such as Python, Ruby, or Pearl<br />Experience working with Next Generation Sequencing data<br />Proficiency with data visualization tools (Spotfire, Tableau, R, Python, etc.)<br />Experience with an object-oriented language such as Java, C++ or C# and familiarity with standard software development best practices: source code control, unit testing, in-code documentation and automated build environments.<br />Excellent listening, time management, organizational and interpersonal skills<br />Excellent communication skills, including the ability to illustrate problems and generate solutions<br />Management skills – demonstrated through the successful management of a team or large projects.<br />Broad and deep knowledge of computational methods for high-throughput sequence analysis and interpretation.<br />Extensive experience in delivering bioinformatics as a service and conducting training programs.<br />Experience of working with a production, customer-focused environment and business development projects.<br />Experience with management of funding and financial sustainability.<br />Demonstrated ability to work in a team environment and ability to lead and motivate an effective team, and also work as a good team player.<br />Good problem solver, able to logically identify solutions to technical problems.<br />Able to see the bigger picture and contribute towards strategic direction of Platforms and Pipelines teams.<br />Responsibilities</p>

<p>This position will involve cross-functional teamwork to build and develop bioinformatics tools and provide analysis for ongoing clinical trials.<br />Collaborate with biomarker scientists, clinical investigators and pipeline teams to build analytical tools.<br />Implement and evaluate new algorithms for R&amp;D.<br />Support Research and Development teams by analyzing NGS data to identify predictive response markers<br />Lead training programs in Computational Biology and Bioinformatics.</p>

<p>More at http://rgcb.res.in/positions.php</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38378/gwaspro-a-high-performance-genome-wide-association-analysis-server</guid>
	<pubDate>Fri, 07 Dec 2018 08:04:57 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38378/gwaspro-a-high-performance-genome-wide-association-analysis-server</link>
	<title><![CDATA[GWASpro: A High-Performance Genome-Wide Association Analysis Server]]></title>
	<description><![CDATA[<p>GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be accounted for in the linear mixed model (LMM). GWASpro is optimized to handle GWAS data that may consist of up to 10 million markers and 10,000 samples from replicable lines or hybrids. GWASpro provides an interface that significantly reduces the learning curve for new GWAS investigators.</p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="https://bioinfo.noble.org/GWASPRO/" rel="nofollow">https://bioinfo.noble.org/GWASPRO/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28819/research-project-at-iit-madras</guid>
  <pubDate>Wed, 17 Aug 2016 03:26:06 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Project at IIT, Madras]]></title>
  <description><![CDATA[
<p>Two project positions are available to work on (i) molecular modeling and molecular dynamics simulations and (ii) development of bioinformatics databases and tools at Protein Bioinformatics Lab, Department of Biotechnology, IIT Madras.</p>

<p>Duration : Initially for a period of one year. Extendable based on the performance.</p>

<p>Qualification: (i) MSc in Bioinformatics, Biotechnology, Physics, Biophysics, Biochemistry,Computer Science with NET (UGC/CSIR/GATE/BINC/INSPIRE etc) qualification. (OR) (ii) M. Tech in Bioinformatics, Biotechnology</p>

<p>Additional qualification: Programming skills</p>

<p>Candidates who fulfill the requirements of IIT have the possibility to register for PhD.</p>

<p>Fellowship: Rs.25,000 and HRA.</p>

<p>Applicants are encouraged to send the CV to the coordinator by postal mail and e-mail. The deadline to receive the applications is 31st August 2016. The project coordinator has the discretion to restrict the number of candidates to be called for interview to a reasonable limit on the basis of qualifications and experience higher than the minimum prescribed in the announcement.</p>

<p>Project Co-ordinator:</p>

<p>Dr. M. Michael Gromiha <br />Department of Biotechnology <br />Indian Institute of Technology Madras <br />Chennai 600036 <br />Email: gromiha@iitm.ac.in</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28829/jrf-bioinformatics-at-manit-india</guid>
  <pubDate>Thu, 18 Aug 2016 02:48:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at MANIT, India]]></title>
  <description><![CDATA[
<p>Advt. No.: Maths./577/2016 Date: 12/08/2016<br />JRF Bioinformatics Job Position in Maulana Azad National Institute of Technology (MANIT) purely temporary basis<br />Project Title : “Computational Approach to Study Complex Biological Network of Diseases using Molecular Data”<br />Essential Qualifications &amp; experience: M.Tech in Bioinformatics/ Computational System biology/Computer Science or M.Sc. in Bio informatics/Biotechnology/Mathematics/Statistics from recognized University/ Institute. Preference will be given to GATE/NET qualified candidates.<br />No. of Post : 01<br />Fellowship: INR 12000<br /> <br />How to apply<br />The duly completed application on prescribed format along with copies of supporting documents must reach to: office of the Dr. Usha Chouhan, Principal Investigator, Department of Mathematics, Bioinformatics &amp; Computer Applications, Maulana Azad National Institute of Technology, Bhopal-462003 on or before 31/08/2016. A soft copy of the application should also be sent to ycchouhan@gmail.com  email address of Principal Investigator.</p>

<p>More at http://www.web.manit.ac.in/Year%202016/JRF/walk%20in.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44539/bactopia-a-flexible-pipeline-for-complete-analysis-of-bacterial-genomes</guid>
	<pubDate>Wed, 15 May 2024 14:36:12 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44539/bactopia-a-flexible-pipeline-for-complete-analysis-of-bacterial-genomes</link>
	<title><![CDATA[Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes]]></title>
	<description><![CDATA[<p dir="auto">Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is to process your data with a broad set of tools, so that you can get to the fun part of analyses quicker!</p>
<p dir="auto">Bactopia can be split into two main parts:&nbsp;<a href="https://bactopia.github.io/latest/beginners-guide/">Bactopia Analysis Pipeline</a>, and&nbsp;<a href="https://bactopia.github.io/latest/bactopia-tools/">Bactopia Tools</a>.</p>
<p dir="auto">Bactopia Analysis Pipeline is the main&nbsp;<em>per-isolate</em>&nbsp;workflow in Bactopia. Built with&nbsp;<a href="https://www.nextflow.io/">Nextflow</a>, input FASTQs (local or available from SRA/ENA) are put through numerous analyses including: quality control, assembly, annotation, minmer sketch queries, sequence typing, and more.</p>
<p dir="auto"><a href="https://github.com/bactopia/bactopia/blob/master/data/bactopia-workflow.png" target="_blank"><img src="https://github.com/bactopia/bactopia/raw/master/data/bactopia-workflow.png" alt="Bactopia Overview" style="border: 0px;"></a></p>
<p dir="auto">Bactopia Tools are a set a independent workflows fo</p><p>Address of the bookmark: <a href="https://github.com/bactopia/bactopia" rel="nofollow">https://github.com/bactopia/bactopia</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28926/scientist-at-advanced-centre-for-treatment-research-and-education-in-cancer-navi-mumbai-maharashtra</guid>
  <pubDate>Tue, 30 Aug 2016 04:16:15 -0500</pubDate>
  <link></link>
  <title><![CDATA[Scientist at Advanced Centre for Treatment, Research and Education in Cancer - Navi Mumbai, Maharashtra]]></title>
  <description><![CDATA[
<p>Scientist <br />Advanced Centre for Treatment, Research and Education in Cancer - Navi Mumbai, Maharashtra<br />Scientist (One position) <br />Project: Bioinformatics centre DBT- Sub-DIC at ACTREC <br />Funding agency: DBT Grant No.232 </p>

<p>Duration of the Project: Six Months from the date of appointment can be extended further for six months <br />Essential Qualification and Experience: 1st Class Masters Degree in Bioinformatics or Life Sciences equivalent degree from a recognized University with 4 years R&amp;D experience in Bioinformatics or relevant subjects from recognized institutes. <br />OR <br />Ph.D. degree in Bioinformatics or Life Sciences from recognized University. <br />M.Sc. degree obtained after a one year course will not be considered. <br />Experience: Research/teaching experience in Bioinformatics or relevant subjects form recognized Institute(s). </p>

<p>More at http://www.actrec.gov.in/data%20files/Vacancies/2016/AV-scin-stud-trainee-6-Sept-16.docx</p>
]]></description>
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