BOL: Related items

Parliament2: Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

Jit — Thu, 28 May 2020 21:57:03 -0500

Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a region, Inversions of a region, or Translocations between two regions in the genome.

Parliament2 runs a combination of tools to generate structural variant calls on whole-genome sequencing data. It can run the following callers: Breakdancer, Breakseq2, CNVnator, Delly2, Manta, and Lumpy. Because of synergies in how the programs use computational resources, these are all run in parallel. Parliament2 will produce the outputs of each of the tools for subsequent investigation.

Address of the bookmark: https://github.com/dnanexus/parliament2

Project Fellow Positions at CSIR-IHBT Palampur

Tue, 01 Dec 2015 05:45:58 -0600

Walk-in-Interview is scheduled to be held on the date as mentioned below for selection of Suitable candidates in the following areas under the different Sponsored/CSIR Networked Projects on purely temporary basis for the duration of the project(s) or till completion of projects whichever is earlier:

Sponsored/CSIR Networked Project:
(i) Genomics and Informatics Solutions for Integrating Biology (GENESIS)" [BSC-0121] (up to March, 2017).
(ii) Profiling and characterization of early phase differential mi-RNA (s) responsible for downstream developmen of insulin resistance in hMSC derived adipocytes. (GAP-0188) [up to 31.03.2018].

Position: Project Fellow (2 position)
Age : 28 years as on 18.12.15
Salary : Rs.12,000/- P.M.
Rs.14,000/- P.M.
as per the funds provisions in the respective projects.
Eligibility Criteria : 1st Class B. Tech. in Bioinformatics/ Computational Biology
OR
M.Sc. in Bioinformatics/ Computational Biology with 55% marks
OR
M.Tech. in Bioinformatics/ Computational Biology with 55% marks
OR
M.Sc. in any field of Life Science with Diploma in Bioinformatics

Selection Procedure : Walk In Interview

Date : 18 Dec , 2015
Time : 10:00 A.M.
Venue : CSIR-IHBT Palampur (H.P.)

Project Associate-I | Project Associate-II | Senior Project Associate @ IGIB

Thu, 05 Aug 2021 16:11:32 -0500

Experience in Next Generation Sequencing (NGS) application and interest in Genomics/ Clinical / Translational Applications. OR Good computational programming skills and deep interest in working on interface of Genomics and Clinical application.

Project Scientist-I
Experimental / Computation analysis experience in highthroughput genomics/ clinical application.

Project Manager
Experience in handling large biological projects involving high-throughput genomics/ clinical application.

Scientific Administrative Assistant
Lab Work.

More at https://vinodscaria.genomes.in/positionsopen

JRF Bioinformatics at National Chemical Laboratory

Sun, 03 Jan 2016 05:59:05 -0600

Junior Project Fellow Bioinformatics
Eligibility : ME/M.Tech, MSc(Bio-Informatics)
Location : Pune
Last Date : 08 Jan 2016
Hiring Process : Written-test, Face to Face Interview
National Chemical Laboratory

Junior Project Fellow Jobs opportunity in National Chemical Laboratory on contract basis
Project Code : BSC0117
Title of the Project : Plant?Microbe and Soil Interactions (PMSI)
No. of Post : 01
Qualification : M.Tech. / M.Sc. in Bioinformatics from a recognized university with minimum of 55% marks (aggregate) and sound Bioinformatics knowledge / experience
Desirable : Good knowledge of Linux (command line and GUI) and SQL; Java / Perl / Python / R / Bash programing / scripting; Analysis of NGS data; Protein modeling / docking; Development and maintenance of web & database servers, etc
Emoluments : Rs. 16,000/?
Age Limit : 28 Years
Selection Procedure : Written Test / Interview
How to apply
Applications neatly typed in the prescribed proforma (enclosed herewith) duly completed and signed together with photo?copies of relevant certificates/ testimonials and photograph should be addressed to : The Head, Biochemical Sciences Division, Attn : Dr. Narendra Kadoo, CSIR?National Chemical Laboratory, Dr. Homi Bhabha Road, Pashan, Pune 411 008, so as to reach on or before 08/01/2016. Please superscribe the envelop “Application for Junior Project Fellow (Project: BSC0117)”.

More at http://www.ncl-india.org/files/JoinUs/JobVacancies/TemporaryJobs.aspx?

JRF Bioinformatics at CUK

Thu, 03 Dec 2015 23:40:38 -0600

JRF Bioinformatics

Eligibility : MSc(Bio-Informatics), BE/B.Tech

Location : Kasaragod

Last Date : 20 Dec 2015

Hiring Process : Face to Face Interview
Central University of Kerala

JRF job opportunity in Central University of Kerala (CUK) on temporary basis

Project Title : "Targeting TAL effector mediated susceptibility for durable and broad-spectrum resistance to bacterial blight in Rice"

No. of Post : 01

Qualification : MSc in any subject under Life Science or Bioinformatics/ B.Tech in Bioinformatics + 1 yr experience

Stipend : Rs. 14,000/-
How to apply

Interested candidates are requested to send their applications explaining their interest in the position with an updated CV to Dr. Ginny Antony, Assistant Professor, Department of Plant Science, School of Biological Sciences, Central University of Kerala, Padannakkad, Kasaragod, Kerala - 671 314 email: ginnycuk2013@gmail.com on or before 20th December, 2015.

VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules

Rahul Nayak — Thu, 04 Oct 2018 16:30:44 -0500

VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store only those read-pairs or reads who intersect some region around the variant locations. Alternatively, if your scientific question is focused on only one aspect of the data (e.g. breakpoints), many reads can be removed without losing the information relevant to the problem.

Address of the bookmark: https://github.com/broadinstitute/VariantBam

JRF/Traineeship/Studentship Bioinformatics

Thu, 10 Dec 2015 13:49:56 -0600

JRF/Traineeship/Studentship Bioinformatics

Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg, CSE), MSc(Bio-Informatics, CS)

Location : Delhi

Last Date : 18 Dec 2015

Hiring Process : Walk - In
IARI - Job Details

JRF/Traineeship/Studentship Bioinformatics job position in Indian Agricultural Research Institute (IARI) purely temporary

JRF

Qualification: i) Master’s degree in Bioinformatics or Computer Science + NET qualification, or ii) M. Tech degree in Bioinformatics or Computer Science/Engineering

Desirable: Efficiency to handle agricultural databases and bioinformatics tool development

Pay Scale :Rs 25000/-

Age limit : 35 years

Traineeship/2 Post

Qualification: M.Sc./M. Tech (Bioinformatics) with 60 % marks from a recognized University

Pay Scale :Rs. 8000/-consolidated

Age limit : 35 years

Studentship/4 Post

Qualification: Final year M.Sc./ M.Tech (Bioinformatics) Students from a recognized University

Pay Scale :Rs. 8000/-consolidated

Age limit : 35 years
How to apply

Walk-in-Interview will be held on 18th December 2015 at 10:00 AM at AKMU, LBS Building,IARI, Pusa Campus, New Delhi-110012. Bring self attested copies and originals of all certificates ( class 10th )onwards along with biodata in the attached format, proof of date of birth, one passport size photo, NOC from present employer, if any.

More at http://www.iari.res.in/index.php?option=com_jumi&fileid=24&Itemid=664

JRF Bioinformatics job position in University of Hyderabad

Tue, 29 Dec 2015 01:00:18 -0600

JRF Bioinformatics

Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg), MSc(Bio-Informatics)

Location : Hyderabad

Last Date : 30 Dec 2015

Hiring Process : Written-test
University of Hyderabad

JRF Bioinformatics job position in University of Hyderabad

Project Entitled : Programming protective humoral responses with novel vaccine formulations against Dengue Virus

Essential Qualifications : M. Sc. in Life Sciences/Bioinformatics/ or M. Tech in Bioinformatics with a minimum of 60% marks and with CSIR-UGC JRF/NET or valid GATE score are preferred. Desirable : Candidates should have six months to one year hands on experience in molecular biology techniques like gene cloning, protein expression and purification, hands on various nano-formulations for drug/vaccine delivery, immunological assays including animal handling, immunizations, T cells and B cell assays or Candidate should have strong background in Bioinformatics and computational Biology, good programming skill particularly proficiency in R/PERL/PYTHON. Candidates interested in above position should send a one page statement clearly explaining how their skills are relevant to the above said position. The candidates should also enclose detailed CV and the name/Email IDs of three references

Fellowship : Rs. 16,000 p.m. + 30% H.R.A. for the first two years (Revised DBT fellowship guidelines maybe applicable)

Duration : The appointment will be on temporary basis for a period of one year. Based on performance, the appointment could be extended till the end of project

How to apply

Submit your application (hardcopy) in a closed envelope to Dr.Nooruddin
Khan, Room S-66B,Department of Biotechnology and Bioinfromatics, School of Life Sciences, University of Hyderabad, Gachibowli, Hyderabad 500 046 or E mail: nklabsls@gmail.com. Last date for receipt of applications is on or before 30.12.2015

More at http://uohyd.ac.in/index.php/component/content/article/87-administration/recruitments/129

npScarf: Scaffolding and Completing Assemblies in Real-time Fashion

Jit — Tue, 23 May 2017 04:53:29 -0500

npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information such as gene ordering and the detection of genes from mobile elements (plasmids and genomic islands).

Complete paper at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5321748/

Address of the bookmark: https://github.com/mdcao/npScarf

Hoffman Lab

Tue, 12 Jan 2016 02:47:41 -0600

They develop machine learning techniques to better understand chromatin biology. These models and algorithms transform high-dimensional functional genomics data into interpretable patterns and lead to new biological insight.

https://www.pmgenomics.ca/hoffmanlab/