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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31566?offset=720</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26438/scientist-at-regional-medical-research-centre-icmr-rmrc-port-blair</guid>
  <pubDate>Mon, 22 Feb 2016 04:38:48 -0600</pubDate>
  <link></link>
  <title><![CDATA[Scientist at Regional Medical Research Centre (ICMR), RMRC, Port Blair]]></title>
  <description><![CDATA[
<p>Scientist</p>

<p>Eligibility : MSc, M Phil / Phd, BE/B.Tech</p>

<p>Location : Delhi</p>

<p>Last Date : 08 Mar 2016</p>

<p>Hiring Process : Walk - In<br />Regional Medical Research Centre - </p>

<p>Notification Order No.1-51/Proj/RMRC/PB/</p>

<p>Scientist – II (Post Code: BIC-II) job position in Regional Medical Research Centre (ICMR)</p>

<p>Essential Qualification: 1 st class Master’s degree in Bioinformatics / Computational Biology.  B.E / B.Tech (Bioinformatics / Computer Science / Biotechnology) OR 2nd Class M.Sc. with Ph.D. in Bioinformatics / Computational Biology / Life Science.</p>

<p>Desirable Qualification:  Post-doctoral research experience in Bioinformatics / Computational Biology / Computer Science / Life Science at a recognized institution.  Experience in handling and analyzing sequencing data.  Experience in scripting languages (PERL/PYTHON) etc./ Statistical software.  Experience in developing research projects.</p>

<p>Number of Post: 1 UR</p>

<p>Place of Posting: RMRC, Port Blair </p>

<p>Age Limit: 40 years</p>

<p>Pay Scale : Rs.45,954<br />How to apply</p>

<p>Interested candidates are invited to submit applications along with copies of all the certificates of educational qualifications, date of birth, working experience etc . on the affixing a passport size photograph by Application Format to attend a walk-in interview on 8th March 2016 at 10:30 AM.</p>

<p>More at http://www.icmr.nic.in/icmrnews/port%20blair%20Bioinf%2003-2016.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42485/fastprongs-fast-preprocessing-of-next-generation-sequencing-reads</guid>
	<pubDate>Sat, 26 Dec 2020 08:35:21 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42485/fastprongs-fast-preprocessing-of-next-generation-sequencing-reads</link>
	<title><![CDATA[FastProNGS: fast preprocessing of next-generation sequencing reads]]></title>
	<description><![CDATA[<p><span>FastProNGS to integrate the quality control process with automatic adapter removal. Parallel processing was implemented to speed up the process by allocating multiple threads. Compared with similar up-to-date preprocessing tools, FastProNGS is by far the fastest.&nbsp;</span></p><p>Address of the bookmark: <a href="https://github.com/Megagenomics/FastProNGS" rel="nofollow">https://github.com/Megagenomics/FastProNGS</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26535/svelter</guid>
	<pubDate>Mon, 29 Feb 2016 17:33:15 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26535/svelter</link>
	<title><![CDATA[svelter]]></title>
	<description><![CDATA[<p>This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling&nbsp;<em>SVelter.py</em>&nbsp;with proper parameters. It's also possible to ran it on multiple cores by calling different sub-functions separately.</p>
<p>More at&nbsp;https://github.com/mills-lab/svelter/</p><p>Address of the bookmark: <a href="https://github.com/mills-lab/svelter/" rel="nofollow">https://github.com/mills-lab/svelter/</a></p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44595/squeezemeta-a-fully-automated-metagenomics-pipeline-from-reads-to-bins</guid>
	<pubDate>Sat, 06 Jul 2024 04:29:16 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44595/squeezemeta-a-fully-automated-metagenomics-pipeline-from-reads-to-bins</link>
	<title><![CDATA[SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins]]></title>
	<description><![CDATA[<p dir="auto">SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes via binning procedures. Thus, SqueezeMeta features several unique characteristics:</p>
<ol dir="auto">
<li>Co-assembly procedure with read mapping for estimation of the abundances of genes in each metagenome</li>
<li>Co-assembly of a large number of metagenomes via merging of individual metagenomes</li>
<li>Includes binning and bin checking, for retrieving individual genomes</li>
<li>The results are stored in a database, where they can be easily exported and shared, and can be inspected anywhere using a web interface.</li>
<li>Internal checks for the assembly and binning steps inform about the consistency of contigs and bins, allowing to spot potential chimeras.</li>
<li>Metatranscriptomic support via mapping of cDNA reads against reference metagenomes</li>
</ol><p>Address of the bookmark: <a href="https://github.com/jtamames/SqueezeMeta" rel="nofollow">https://github.com/jtamames/SqueezeMeta</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26562/jrf-at-icgeb</guid>
  <pubDate>Fri, 04 Mar 2016 05:34:42 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF at ICGEB]]></title>
  <description><![CDATA[
<p>Vacancy Notice PU/TS/01-16</p>

<p>JRF jobs in International Centre for Genetic Engineering and Biotechnology</p>

<p>Area of research: Computational analysis of protein-protein interactions and metabolic reconstruction of pathways</p>

<p>Qualification : Suitable candidate must have completed Masters in Computer Science/Physics/Mathematics/Bioinformatics or PG diploma in Bioinformatics with very sound programming skills shown in the form of completed project or paper. Programming Skill required: Java/perl/python or any other scripting language and working knowledge of MySQL. Candidate should have some familiarity with R statistical package.</p>

<p>The salary will be as per the guidelines of DBT/DST, based on qualification and experience.</p>

<p>How to apply</p>

<p>Interested candidates may send application along with CV via email to hemant@icgeb.res.in  (Dr. Hemant Ritturaj Kushwaha) on or before 08/03/2016. Candidates applying through Email must mention “Application for JRF” in their subject line.</p>

<p>More at http://www.icgeb.org/vacancies.html</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/16686/sequence-viewer-download-transcripts-exons-and-proteins</guid>
	<pubDate>Mon, 15 Sep 2014 17:30:36 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/16686/sequence-viewer-download-transcripts-exons-and-proteins</link>
	<title><![CDATA[Sequence Viewer: Download Transcripts, Exons and Proteins]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/ZWnLyYKozaI" frameborder="0" allowfullscreen></iframe>How to download FASTA sequence for certain gene features while in the NCBI's Sequence Viewer.

Sequence Viewer homepage:
www.ncbi.nlm.nih.gov/projects/sviewer/

Sequence Viewer playlist:
https://www.youtube.com/playlist?list=PL76D7EE6A6A8AC1C3]]></description>
	
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26712/post-doctoral-fellow-jobs-opportunity-in-srm-university</guid>
  <pubDate>Thu, 17 Mar 2016 11:20:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[Post-Doctoral Fellow Jobs opportunity in SRM University]]></title>
  <description><![CDATA[
<p>Post-Doctoral Fellow Jobs opportunity in SRM University</p>

<p>Essential qualification : Ph.D. in Bioinformatics/Biotechnology/Genetics/Computational Biology.Understanding of genomics data and advanced knowledge of Java, and C/C++ as the programming languages and the scripting language like perl and/or Python, SQL is preferred. Experience in High Performance Computing, data architecture, database development is desirable</p>

<p>Fellowship: Rs 35,000 /-<br /> <br />How to apply</p>

<p>Candidates are requested to send their CV, and a brief summary of research experience by e-mail careers.genetics@ktr.srmuniv.ac.in  on or before 30/03/2016.</p>

<p>More at http://www.srmuniv.ac.in/jobs-applications-for-position-of-post-doctoral-fellow</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34565/fogsaa-fast-optimal-global-sequence-alignment-algorithm</guid>
	<pubDate>Fri, 08 Dec 2017 14:41:08 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34565/fogsaa-fast-optimal-global-sequence-alignment-algorithm</link>
	<title><![CDATA[FOGSAA: Fast Optimal Global Sequence Alignment Algorithm]]></title>
	<description><![CDATA[<p>Sequence alignment algorithms are widely used to infer similarirty and the point of differences between pair of sequences. FOGSAA is a fast Global alignment algorithm. It is basically a branch and bound approach which starts branch expansion in a greedy way taking the symbols from the given pair of sequences (protein or nucleotide) and results in an optimal alignment faster than conventional dymanic programming techniques. It is also better than the heuristic methods with respect to alignment quality.</p><p>Address of the bookmark: <a href="http://www.isical.ac.in/~bioinfo_miu/FOGSAA.htm" rel="nofollow">http://www.isical.ac.in/~bioinfo_miu/FOGSAA.htm</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26823/srf-at-nrcpb-new-deslhi</guid>
  <pubDate>Fri, 25 Mar 2016 04:53:11 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF at NRCPB, New Deslhi]]></title>
  <description><![CDATA[
<p>NRCPB Recruitment 2016 – Walk in for SRF &amp; Young Professional Posts: National Research Centre on Plant Biotechnology (NRCPB) has announced a notification for the recruitment of Senior Research Fellow &amp; Young Professional Scheme vacancies for the project “NPTC Co-ordinating Cell” on temporary &amp; co-terminus basis. Eligible candidates may walk in interview on 29-03-2016 at 10.00 AM. Other details like age limit, educational qualification, selection process &amp; how to apply are given below…</p>

<p>NRCPB Vacancy Details:<br />Total No.of Posts: 02 <br />Name of the Posts:<br />1. Senior Research Fellow: 01 Post<br />2. Young Professional Scheme: 01 Post</p>

<p>Age Limit: Candidates maximum age should be 35 years. Age relaxation 5 years for SC/ ST/ OBC and women candidates as per ICAR rules.</p>

<p>Educational Qualification: Candidates should posses M.Sc/ M.Tech/ M.C.A. in Molecular Biology/ Biotechnology/ Life Sciences/ Allied Sciences/ Agricultural Sciences/ Computer Science/ Bioinformatics with 1st division or 60% marks or equivalent.</p>

<p>Selection Process: Candidates will be selected based on interview.</p>

<p>How to Apply: Eligible candidates may attend the interview along with four copies of biodata, original certificates, attested photocopies of each of the certificates and an attested copy of recent passport size photograph at NRCPB, LBS Building, Pusa Campus, New Delhi- 110012 on 29-03-2016 at 10.00 AM.</p>

<p>Important Dates:<br />Date &amp; Time of Interview: 29-03-2016 at 10.00 AM.<br />Venue: NRCPB, LBS Building, Pusa Campus, New Delhi-110012.</p>

<p>Read more: http://www.nrcpb.res.in/content/walk-interview-srf-and-yp</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43810/seqfu-a-suite-of-utilities-for-the-robust-and-reproducible-manipulation-of-sequence-files</guid>
	<pubDate>Tue, 01 Mar 2022 03:13:33 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43810/seqfu-a-suite-of-utilities-for-the-robust-and-reproducible-manipulation-of-sequence-files</link>
	<title><![CDATA[SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files]]></title>
	<description><![CDATA[<p>A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gzipped input files. Includes functions to&nbsp;<em>interleave</em>&nbsp;and&nbsp;<em>de-interleave</em>&nbsp;FASTQ files, to&nbsp;<em>rename</em>&nbsp;sequences and to&nbsp;<em>count</em>&nbsp;and print&nbsp;<em>statistics</em>&nbsp;on sequence lengths. SeqFu is available for Linux and MacOS.</p>
<ul>
<li>A compiled program delivering high performance analyses</li>
<li>Supports FASTA/FASTQ files, also Gzip compressed</li>
<li>A growing collection of handy utilities, also for quick inspection of the datasets</li>
</ul>
<p>Can be easily&nbsp;<a href="https://telatin.github.io/seqfu2/installation">installed</a>&nbsp;via conda:</p>
<div>
<div>
<pre><code>conda <span>install</span> <span>-c</span> bioconda seqfu</code></pre>
</div>
</div><p>Address of the bookmark: <a href="https://telatin.github.io/seqfu2/" rel="nofollow">https://telatin.github.io/seqfu2/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

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