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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31714?offset=1120</link>
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	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33820/circular-visualization-in-r</guid>
	<pubDate>Wed, 05 Jul 2017 04:11:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33820/circular-visualization-in-r</link>
	<title><![CDATA[Circular Visualization in R]]></title>
	<description><![CDATA[<p>This is the documentation of the&nbsp;<a href="https://cran.r-project.org/package=circlize"><span>circlize</span></a>&nbsp;package. Examples in the book are generated under version 0.4.1.</p>
<p>If you use&nbsp;<span>circlize</span>&nbsp;in your publications, I would be appreciated if you can cite:</p>
<p>Gu, Z. (2014) circlize implements and enhances circular visualization in R. Bioinformatics. DOI:&nbsp;<a href="https://doi.org/10.1093/bioinformatics/btu393">10.1093/bioinformatics/btu393</a></p><p>Address of the bookmark: <a href="http://zuguang.de/circlize_book/book/" rel="nofollow">http://zuguang.de/circlize_book/book/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21624/ra-bioinformatics-at-ch-charan-singh-university-meerut</guid>
  <pubDate>Wed, 11 Mar 2015 09:07:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Ch. Charan Singh University, Meerut]]></title>
  <description><![CDATA[
<p>Ch. Charan Singh University, Meerut</p>

<p>http://molbiolabccsumrt.webs.com/</p>

<p>Applications are invited for one post of RA in a DBT funded research project “Creation of Bioinformatics Infrastructure Facility (BIF) for the promotion of Biology Teaching through Bioinformatics (BTBI) Scheme of BTISet”.</p>

<p>Candidate should have a Ph.D. degree in Bioinformatics/Biotechnology/Genetics and Plant Breeding with adequate experience in the area of Bioinformatics. If a suitable candidate for the post of RA is not available, a JRF/SRF may be appointed.</p>

<p>Candidate for the post of JRF/SRF should have Master’s degree in relevant subject with adequate experience in the area of Bioinformatics and should be NET/DBT-BINC qualified</p>

<p>Interested candidates may send their bio-data to Prof. H. S. Balyan (hsbalyan@gmail.com) (in exceptional case, bio-data may also be submitted at the time of interview) and attend the interview on Monday, March 30, 2015 at 11:00 AM in the Department of Genetics &amp; Plant Breeding, Ch. Charan Singh University, Meerut. Candidates shall bring their original documents at the time of interview for verification. No interview letters will be issued and no TA/DA will be paid.</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36905/d-genies-a-tool-for-dotplot-large-genomes-in-an-interactive-efficient-and-simple-way</guid>
	<pubDate>Mon, 11 Jun 2018 09:41:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36905/d-genies-a-tool-for-dotplot-large-genomes-in-an-interactive-efficient-and-simple-way</link>
	<title><![CDATA[D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way]]></title>
	<description><![CDATA[D-GENIES – for Dotplot large Genomes in an Interactive, Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome and you can interact with the dot plot to improve the visualisation.

We use minimap version 2 to align the two genomes. Then, the PAF file is parsed and plotted into an interactive plot written with d3.js library.

D-Genies also allows to display dot plots from other aligners by uploading their PAF or MAF alignment file.

http://dgenies.toulouse.inra.fr/<p>Address of the bookmark: <a href="http://dgenies.toulouse.inra.fr/" rel="nofollow">http://dgenies.toulouse.inra.fr/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/21703/coding-ground</guid>
	<pubDate>Tue, 17 Mar 2015 00:47:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/21703/coding-ground</link>
	<title><![CDATA[Coding Ground]]></title>
	<description><![CDATA[<p>Online coding group for most of the programming languages.</p>
<p>Code in almost all popular languages using Coding Ground.&nbsp;Edit, compile, execute and share your projects, 100% cloud.</p>
<p>http://www.tutorialspoint.com/codingground.htm</p><p>Address of the bookmark: <a href="http://www.tutorialspoint.com/codingground.htm" rel="nofollow">http://www.tutorialspoint.com/codingground.htm</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38577/genoviz-visualization-software-for-genomics</guid>
	<pubDate>Wed, 02 Jan 2019 04:07:57 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38577/genoviz-visualization-software-for-genomics</link>
	<title><![CDATA[GenoViz: Visualization software for genomics]]></title>
	<description><![CDATA[<p><span>GenoViz provides software applications and re-usable components for data visualization and data sharing in genomics. Our flagship product is Integrated Genome Browser (IGB).</span><br><br><span>For more information about IGB, visit&nbsp;</span><a href="http://bioviz.org/" target="_blank">http://bioviz.org<span></span></a><span>.</span><br><br><span>Source code for the project was hosted here for many years. In 2014, we moved to a new git repository at&nbsp;</span><a href="http://www.bitbucket.org/lorainelab/integrated-genome-browser" target="_blank">http://www.bitbucket.org/lorainelab/integrated-genome-browser<span></span></a><span>. We are still using SourceForge to distribute new releases of IGB as compiled code (igb.zip) you can use to run IGB on your computer.&nbsp;</span><br><br><span>If you have questions, feel free to get in touch. Contact project head Ann Loraine (</span><a href="mailto:aloraine@uncc.edu" target="_blank">aloraine@uncc.edu<span></span></a><span>) or lead developer David Norris (</span><a href="mailto:dcnorris@uncc.edu" target="_blank">dcnorris@uncc.edu<span></span></a><span>&gt;).</span></p><p>Address of the bookmark: <a href="https://sourceforge.net/projects/genoviz/" rel="nofollow">https://sourceforge.net/projects/genoviz/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21851/bioinformatics-project-assistant-at-nitw</guid>
  <pubDate>Wed, 01 Apr 2015 01:43:27 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Project Assistant at NITW]]></title>
  <description><![CDATA[
<p>NATIONAL INSTITUTE OF TECHNOLOGY WARANGAL – 506 004</p>

<p>DEPARTMENT OF BIOTECHNOLOGY</p>

<p>No. NITW/Bio/ Date: 30th March 2015</p>

<p>ADVERTISEMENT FOR PROJECT FELLOW (Research Staff)</p>

<p>Applications are invited for the post of Project Fellow (Research Staff) for the project entitled ‘Metagenome derived nitroreductases for degradation of nitro compounds’ sponsored by the Department of Science and Technology (DST-INSPIRE), Govt. of India.</p>

<p>Position: Project Fellow (1 No.)</p>

<p>Project Duration: 5 years</p>

<p>Note: The post is purely on temporary basis for a period one year and may be extendable till the end of the project based on the progress of the candidate.</p>

<p>Emoluments: Rs. 14,000/- per month (Consolidated) for first two years and Rs. 16,000/- per month (Consolidated) for next three years.</p>

<p>Essential Qualifications:</p>

<p>i) First class in M.Tech/M.S (Biotechnology/Industrial Biotechnology/Bioinformatics) or equivalent. Or</p>

<p>ii) First class in M.Sc. (Biotechnology/Bioinformatics/Biochemistry/ Microbiology/Molecular biology).</p>

<p>Desirable Qualification: Preference will be given to candidates who have cleared NET/GATE or having prior work experience in Molecular biology/Bioinformatics sequence analysis.</p>

<p>Interested candidates may submit their application in plain paper along with Curriculum Vitae and photocopies of certificates in support of educational/professional qualifications. Application should be sent in a closed cover with a superscription on the cover “Application for the post of project fellow (DST-INSPIRE)” on or before 20.04.2015 (Monday) via Post to the Principal Investigator. Eligible candidates will be intimated through e-mail and called for interview at the Department of Biotechnology, NIT, Warangal. No TA/DA will be paid for attending the interview. Dr. K. Divakar (Principal Investigator) DST-INSPIRE Faculty Department of Biotechnology National Institute of Technology Warangal – 506 004. Telangana, India. E-mail: divakar@nitw.ac.in; kdivak@gmail.com</p>

<p>Advertisement: http://www.nitw.ac.in/nitw/announcements/2015/Notification_Project_Fellow_DST_INSPIRE_Biotechnology_NITW.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39917/chromomap-an-r-package-for-interactive-visualization-and-annotation-of-chromosomes</guid>
	<pubDate>Sat, 07 Sep 2019 10:45:31 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39917/chromomap-an-r-package-for-interactive-visualization-and-annotation-of-chromosomes</link>
	<title><![CDATA[chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes]]></title>
	<description><![CDATA[<p><code>chromoMap</code>&nbsp;provides interactive, configurable and elegant graphics visualization of chromosomes or chromosomal regions allowing users to map chromosome elements (like genes,SNPs etc.) on the chromosome plot.Each chromosome is composed of loci(representing a specific range determined based on chromosome length) that, on hover, shows details about the annotations in that locus range. The plots can be saved as HTML documents that can be shared easily. In addition, you can include them in R Markdown or in R Shiny applications.</p>
<p>Some of the prominent features of the package are:</p>
<ul>
<li>visualizing polyploidy simultaneously on the same plot.</li>
<li>annotating groups of elements as distinct colors.</li>
<li>creating chromosome heatmaps.</li>
<li>adjusting chromosome range or visualizing chromosome regions such as genes</li>
<li>adding labels to the plot</li>
<li>adding hyperlinks to each element</li>
</ul><p>Address of the bookmark: <a href="https://cran.r-project.org/web/packages/chromoMap/vignettes/chromoMap.html" rel="nofollow">https://cran.r-project.org/web/packages/chromoMap/vignettes/chromoMap.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21930/bioinformatics-ra-at-ivri</guid>
  <pubDate>Tue, 07 Apr 2015 03:10:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics RA at IVRI]]></title>
  <description><![CDATA[
<p>A walk in interview is scheduled in the seminar hall of Veterinary Biotechnology Division of the institute on 9.04.15 at 10.30 am for the engagement of one Research associate (RA) in ICAR funded time bound project entitled “Centre for Agricultural bioinformatics (CABin)”.</p>

<p>The engagement is purely temporary on contractual basis and co-terminus with the project. There will be no provision of absorption of absorption/reemployment in IVRI/DBT on termination of the project.</p>

<p>No TA/DA will be provided for appearing in the interview and no separate letter will be issued.</p>

<p>A. Name tile of the project: “Centre for Agricultural bioinformatics (CABin)”.</p>

<p>B. Position/post to be filled: Research Associate (one)</p>

<p>C. Essential/Desirable qualifications:</p>

<p>•Essential: M.V.Sc./M.Tech./MSc Degree in Biotechnology/ Biochemistry/ Microbiology/Immunology/Bioinformatics/Genetics/Life Sciences or</p>

<p>Masters in Computer Application/ Masters in Computer science with first division.</p>

<p>• Desirable: Experience in cell culture, next generation sequencing, C++ and perl programming. NET/GATE qualified will be preferred.</p>

<p>• Experience : At least 2 years</p>

<p>D. Emoluments: Rs. 23000/- per month + 20% HRA</p>

<p>E. Age Limit: Maximum 40 years for men and 45 years for women</p>

<p>F. Duration of the project: Up to March 2017</p>

<p>G. Name of PI/Contact person: Dr. G.V.P.P.S. Ravi Kumar, Sr. Scientist, Division of Veterinary Biotechnology.</p>

<p>H. Address for correspondence: Dr. G.V.P.P.S. Ravi Kumar, Sr. Scientist, Computational Biology and Genomics facility,Division of Veterinary Biotechnology, I.V.R.I., Izatnagar – 243122</p>

<p>Advertisement: www.ivri.nic.in/jobs/WalkIn_interview_01042015.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44557/fundamentals-of-data-visualization-by-claus-o-wilke</guid>
	<pubDate>Sat, 08 Jun 2024 16:07:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44557/fundamentals-of-data-visualization-by-claus-o-wilke</link>
	<title><![CDATA[Fundamentals of Data Visualization by Claus O. Wilke]]></title>
	<description><![CDATA[<p><span><span>The book is meant as a guide to making visualizations that accurately reflect the data, tell a story, and look professional. It has grown out of my experience of working with students and postdocs in my laboratory on thousands of data visualizations. Over the years, I have noticed that the same issues arise over and over. I have attempted to collect my accumulated knowledge from these interactions in the form of this book.</span></span></p>
<p><span>The entire book is written in R Markdown, using RStudio as my text editor and the&nbsp;</span><span>bookdown</span><span>&nbsp;package to turn a collection of markdown documents into a coherent whole. The book&rsquo;s source code is hosted on GitHub, at&nbsp;</span><a href="https://github.com/clauswilke/dataviz">https://github.com/clauswilke/dataviz</a><span>.&nbsp;</span></p><p>Address of the bookmark: <a href="https://clauswilke.com/dataviz/" rel="nofollow">https://clauswilke.com/dataviz/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22066/jrf-bioinformatics-national-institute-of-immunology-new-delhi-110067</guid>
  <pubDate>Fri, 17 Apr 2015 02:39:37 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics @ NATIONAL INSTITUTE OF IMMUNOLOGY  NEW DELHI-110067]]></title>
  <description><![CDATA[
<p>Applications are invited for the position of Junior Research Fellow (Project)/Senior Research Fellow (Project) for the following time-bound sponsored project as per the details given below:</p>

<p>1. “Development of bioinformatics methods for identifying novel secondary metabolites by genome mining” funded by DBT</p>

<p>JRF (P)/SRF (P) (One Position only)</p>

<p>Dr. Debasisa Mohanty Staff Scientist-VI deb@nii.res.in</p>

<p>Educational Qualifications: JRF (Project): M.Sc (Bioinformatics/ Biophysics/Biotechnology or any other stream of biological/physical sciences) or M.Tech. (Bioinformatics/Biotechnology/Computational Sciences) of M. Pharm.</p>

<p>SRF (Project): M.Sc (Bioinformatics/Biophysics/Biotechnology or any other stream of biological/physical sciences) or M.Tech. (Bioinformatics/Biotechnology/Computational Sciences) of M. Pharm with atleast 03 years of research experience.</p>

<p>Desirable Qualifications: Strong computer programming skills (in PERL/CGI/PHP or C++ or object oriented database management systems like MySQL etc or scripting languages under LINUX/UNIX environment) and sufficient experience in computational analysis of biological/biochemical data.</p>

<p>The candidates must highlight their experience in programming and database development in their CV. Job description: Computational analysis of genomes and development of bioinformatics tools and software’s for sequence and structure based analysis of biosynthetic pathways.</p>

<p>Emoluments: The selected candidates will draw consolidated emoluments as per Institute Rules, depending upon qualifications &amp; experience JRF (Project): Rs. 12,000/- per month plus 30% HRA SRF (Project): Rs. 14,000/- per month plus 30% HRA (*Candidates possessing qualifications as per latest DST OM, will be given revised scales). </p>

<p>More at http://www1.nii.res.in/sites/default/files/projectappointments-Dr.DebasisaMohanty-30April2015.pdf</p>
]]></description>
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