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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31714?offset=460</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/34711/1mb-long-dna-with-nanopore-technology</guid>
	<pubDate>Tue, 19 Dec 2017 18:49:28 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/34711/1mb-long-dna-with-nanopore-technology</link>
	<title><![CDATA[1mb long DNA with Nanopore technology]]></title>
	<description><![CDATA[<p>The first continuous DNA read of more than a million bases (&gt;1Mb) has been achieved, using Oxford Nanopore sequencing technology. Congratulations to Martin Smith and collaborators! Read more: http://bit.ly/2j5TNCO</p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/15030/software-engineercomputational-biologist-equinome-ltd-dublin-ireland</guid>
  <pubDate>Thu, 04 Sep 2014 19:21:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[Software engineer/Computational Biologist - Equinome Ltd., Dublin, Ireland]]></title>
  <description><![CDATA[
<p>Equinome (www.equinome.com) is the world leader in the research and<br />development of state-of-the-art novel genomic tools to inform the breeding,<br />selection and training of Thoroughbred racehorses. Since its launch in 2010,<br />Equinome has successfully commercialised three performance-related genetic<br />tests, with a pipeline of further genetic tests in development. We work with<br />many of the world's leading racehorse trainers and breeders in Europe,<br />Australasia, USA and South Africa. The company has been featured on CNN,<br />Bloomberg, RTE, BBC, The Guardian, Discovery Channel and Channel 4, among<br />others.</p>

<p>The Role</p>

<p>We are looking for a Software Engineer - Computational Biologist with 3+<br />years' experience in a similar role to design and implement a backend system<br />to support an online individualised genomics interface. This position is a<br />great opportunity for an ambitious, self-motivated individual to work in a<br />demanding, challenging and interesting role.</p>

<p>Position Description:<br />. Participate in planning, design, and implementation of Equinome back<br />end systems and technologies.<br />. Implement interfaces and management tools for back end services.<br />. Manage, analyse, interpret and visualise large genomics data sets.<br />. Work closely with scientific team to develop new features and<br />application enhancements<br />. Design, develop and manage a genomics research database.</p>

<p>Qualification/Experience:<br />. Minimum MSc in Computer Science, Genetics, Bioinformatics or in a<br />related field (A Ph.D qualification would be an advantage).<br />. Proven 3+ years of experience in similar role.<br />. Highly proficient in Python, SQL, MySQL.<br />. Excellent knowledge of mammalian genomics, bioinformatics and<br />statistical/population genetics.<br />. Hands-on experience working with large data sets.<br />. Experience with front-end technologies (HTML/CSS/Javascript) an<br />advantage.<br />. Experience in rapid web application development: e.g. Django.<br />. Knowledge or experience of Unix Scripting and R statistical<br />programming language would be an advantage.<br />. Ability to work with minimum supervision to deliver high-quality<br />code on time.<br />. Fluency in English and good written and communication skills.<br />. Meticulous attention to detail.</p>

<p>Applications should be submitted before Friday, 26 September 2014 using the<br />following link:<br />http://bit.ly/WgbhxS</p>

<p>Note: Full information and application procedure is available at this link:<br />http://bit.ly/WgbhxS</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37835/variantbam-filtering-and-profiling-of-next-generational-sequencing-data-using-region-specific-rules</guid>
	<pubDate>Thu, 04 Oct 2018 16:30:44 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37835/variantbam-filtering-and-profiling-of-next-generational-sequencing-data-using-region-specific-rules</link>
	<title><![CDATA[VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules]]></title>
	<description><![CDATA[<p>VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store only those read-pairs or reads who intersect some region around the variant locations. Alternatively, if your scientific question is focused on only one aspect of the data (e.g. breakpoints), many reads can be removed without losing the information relevant to the problem.</p>
<h5>&nbsp;</h5><p>Address of the bookmark: <a href="https://github.com/broadinstitute/VariantBam" rel="nofollow">https://github.com/broadinstitute/VariantBam</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/16313/project-assistant-position-at-jmi</guid>
  <pubDate>Fri, 12 Sep 2014 00:37:44 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant Position at JMI]]></title>
  <description><![CDATA[
<p>Project Assistant Position (@ Rs.10,000/pm Fixed) is available for one year ina research project funded by the Department of Science and Technology entitled, "Folding and stability of naturally truncated photosynthetic pigment,C- phycoerythrin from cyanobacterium Phormidium tenue", at Centre forInterdisciplinary Research in Basic Sciences, lamia Millia Islamia, New Delhi-110025 under' the supervision of Dr. Md. Imtaiyaz Hassan (PrincipalInvestigator).</p>

<p>Eligibility:<br />M.Sc. in any stream of Life Sciences with minimum 55% marks.</p>

<p>Desirable:<br />Candidates having experience in Molecular Spectroscopy, Protein Folding and Bioinformatics will be preferred.</p>

<p>Interested candidate may appear in the walk in Interview conducted on September 16, 2014 (Tuesday) 11:00 AM in the Director's Office, Centre for Interdisciplinary Research in Basic Sciences, lamia Millia Islamia, New Delhi-110025.<br />Candidates are required to bring a set of Xerox copy of their recent CV and qualifying degree (certificate/mark sheet) along with original documents. NoTA/DA will be paid.</p>

<p>For any further information you may e-mail to: mihassan@jmLac.in</p>

<p>Read more at http://jmi.ac.in/upload/advertisement/jobs_cirbs_2014september8.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38535/nanopack-visualizing-and-processing-long-read-sequencing-data</guid>
	<pubDate>Tue, 25 Dec 2018 21:20:50 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38535/nanopack-visualizing-and-processing-long-read-sequencing-data</link>
	<title><![CDATA[NanoPack: visualizing and processing long-read sequencing data]]></title>
	<description><![CDATA[The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools.<p>Address of the bookmark: <a href="https://github.com/wdecoster/nanopack" rel="nofollow">https://github.com/wdecoster/nanopack</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17188/jamia-hamdard-bioinformatics-faculty-jobs-2014</guid>
  <pubDate>Sat, 20 Sep 2014 21:00:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[JAMIA HAMDARD Bioinformatics Faculty Jobs 2014]]></title>
  <description><![CDATA[
<p>JAMIA HAMDARD</p>

<p>(Deemed University)</p>

<p>Hamdard Nagar, New Delhi – 110 062</p>

<p>R E C R U I T M E N T</p>

<p>(Advertisement No. 5/2014)</p>

<p>Applications on prescribed form are invited for filling up the following teaching positions in the Department of Biotechnology, Faculty of Science in the university. Eligible candidates may apply on or before 30.09.2014.</p>

<p>1. Professor/Associate Professor - One in Pay Band of Rs. 37400-67000+ AGP Rs.10000/9000</p>

<p>2. Assistant Professor                   -  Two in Pay Band of Rs. 15600-39100+ AGP Rs. 6000/-</p>

<p>ASSISTANT PROFESSOR – 02 (including 01 SFS)</p>

<p>Specialization : Bioinformatics</p>

<p>Qualification and Experience :</p>

<p>Ph.D. in Biotechnology or an allied discipline with M.Sc. in Biotechnology/ Biochemistry in the First division or equivalent grade from a recognized University/ Institute.</p>

<p>NET in Life Science or allied discipline in addition to the above qualification.</p>

<p>Experience : At  least two years of Post-doctoral teaching and/or research experience in Bioinformatics or relevant field in a UGC recognized Institution of repute or international research institute/ University.  Proof of research to be evidenced by publications in SCI-indexed journals of high impact factor as the first or corresponding author.</p>

<p>Note : University may consider exempting candidates from NET, who has been awarded Ph.D. degree from ‘A’ Grade accredited University following the procedure as notified by the UGC in its Regulations of 2009 and adopted by Jamia Hamdard.</p>

<p>For more information: http://www.jamiahamdard.ac.in/PDF/Online%20application%20form%20_Teaching_1.pdf<br />http://www.jamiahamdard.ac.in/PDF/PBAS.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40544/ngs-bits-short-read-sequencing-tools</guid>
	<pubDate>Thu, 16 Jan 2020 23:14:00 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40544/ngs-bits-short-read-sequencing-tools</link>
	<title><![CDATA[ngs-bits - Short-read sequencing tools]]></title>
	<description><![CDATA[<p>Binaries of&nbsp;<em>ngs-bits</em>&nbsp;are available via Bioconda. Alternatively,&nbsp;<em>ngs-bits</em>&nbsp;can be built from sources:</p>
<ul>
<li><span>Binaries</span>&nbsp;for&nbsp;<a href="https://github.com/imgag/ngs-bits/blob/master/doc/install_bioconda.md">Linux/macOS</a></li>
<li>From&nbsp;<span>sources</span>&nbsp;for&nbsp;<a href="https://github.com/imgag/ngs-bits/blob/master/doc/install_unix.md">Linux/macOS</a></li>
<li>From&nbsp;<span>sources</span>&nbsp;for&nbsp;<a href="https://github.com/imgag/ngs-bits/blob/master/doc/install_win.md">Windows</a></li>
</ul><p>Address of the bookmark: <a href="https://github.com/imgag/ngs-bits" rel="nofollow">https://github.com/imgag/ngs-bits</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/17500/joao-pedro-de-magalhaes-lab</guid>
  <pubDate>Fri, 26 Sep 2014 19:08:34 -0500</pubDate>
  <link></link>
  <title><![CDATA[Joao Pedro de Magalhaes Lab]]></title>
  <description><![CDATA[
<p>Ageing has a profound impact on human society and modern medicine, yet it remains a major puzzle of biology. The goal of my work is to help understand the genetic, cellular, and molecular mechanisms of ageing. In the long term, I would like my work to help ameliorate age-related diseases and preserve health. No other biomedical field has so much potential to improve human health as research on the basic mechanisms of ageing. Please see our lab website for further details about our work and publications. </p>

<p>Functional and Comparative Genomics</p>

<p>http://jp.senescence.info/<br />http://www.senescence.info/<br />http://www.liv.ac.uk/integrative-biology/staff/joao-de-magalhaes/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40754/understanding-your-reads-and-mapping</guid>
	<pubDate>Wed, 29 Jan 2020 06:29:55 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40754/understanding-your-reads-and-mapping</link>
	<title><![CDATA[Understanding your reads and mapping !]]></title>
	<description><![CDATA[<p>One of the best tutorial for beginners ...</p>
<p>https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html</p><p>Address of the bookmark: <a href="https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html" rel="nofollow">https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23628/postgraduate-research-associate-bioinformatics-computational-biology-reference-code-59</guid>
  <pubDate>Tue, 04 Aug 2015 20:32:39 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postgraduate Research Associate Bioinformatics / Computational Biology (Reference code: 59)]]></title>
  <description><![CDATA[
<p>The Department of Biotechnology, group “Genome Bioinformatics” is currently seeking a Postgraduate Research Associate Bioinformatics / Computational Biology (Reference code: 59)</p>

<p>Extent of employment: 30 Hours per Week<br />Duration of employment: 1st of October 2015 to 30th of September 2019<br />Gross monthly salary and pay grade in terms of collective agreement for university staff (payable 14 times per year): B1, € 1.997,20</p>

<p>Responsibilities<br />The successful candidate (f/m) will pursue a Ph.D. project related to the interpretation of plant genome and transcriptome sequencing data from next-generation sequencing (NGS) platforms. In particular, the candidate will characterize the unexplored genome of quinoa, a crop plant of long-standing tradition in Latin America. We collaborate with research partners in Austria and abroad, and the candidate’s project will be of central importance in the context of this research network.</p>

<p>Required skills and qualifications<br />We are looking for a graduate student (f/m) with a Master’s degree in bioinformatics or in a related field, solid programming skills (e.g. developing sequence analysis tools), experience with the analysis of NGS data sets, understanding of lab methods and knowledge of genomics/transcriptomics. The group has successfully performed several projects using NGS technology. We have recently published the reference genome sequence of sugar beet (Dohm et al., Nature, 2014), a crop plant closely related to quinoa (same family, but different genus). Not yet published is a quinoa genome assembly that we have generated, and which will serve as the starting point of the candidate’s project. We are a multidisciplinary team and offer work in a lively and friendly atmosphere, and state-of-the-art computing infrastructure. We are looking forward to expanding our team by a dedicated and strongly motivated person with a distinct interest in the challenges of plant genomics.</p>

<p>Applications can be submitted until: 16th of August 2015</p>

<p>University of Natural Resources and Life Sciences Vienna seeks to increase the number of its female faculty and staff members. Therefore qualified women are strongly encouraged to apply. In case of equal qualification, female candidates will be given preference unless reasons specific to an individual male candidate tilt the balance in his favour.</p>

<p>Please send your job application (incl. letter of motivation, CV, summary of Master’s thesis and contact details for two referees) to Personnel department, University of Natural Resources and Life Sciences, 1190 Vienna, Peter-Jordan-Straße 70; E-Mail: kerstin.buchmueller@boku.ac.at. (Reference code: 59)</p>

<p>We regret that we cannot reimburse applicants travel and lodging expenses incurred as part of the selection and hiring process.</p>

<p>www.boku.ac.at</p>
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