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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31881?offset=1190</link>
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	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23672/jrf-in-bioinformatics-rajiv-gandhi-centre-for-biotechnology-rgcb-thiruvananthapuram</guid>
  <pubDate>Sat, 08 Aug 2015 01:22:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF in Bioinformatics @ Rajiv Gandhi Centre for Biotechnology (RGCB), Thiruvananthapuram]]></title>
  <description><![CDATA[
<p>Rajiv Gandhi Centre for Biotechnology (RGCB), Thiruvananthapuram<br />Job Code: 060815(10)Y</p>

<p>Jr Research Fellow Posts At Rajiv Gandhi Centre for Biotechnology<br />Rajiv Gandhi Centre for Biotechnology (RGCB) invites applications to recruit on vacant posts of Junior Research Fellow (JRF). Applications against these Government Jobs can be submitted on or before 15 August 2015.</p>

<p>Rajiv Gandhi Centre for Biotechnology Vacancy 2015 Details<br />Name of the post – Junior Research Fellow (JRF)<br />Total vacancies –</p>

<p>Age Limit: Below 28 years as on 15-08-2015.</p>

<p>Qualification(s): Masters Degree in Life Sciences/Biotechnology/Bioinformatics.</p>

<p>How to Apply: Duly filled-in applications in prescribed application format along with copies of required documents should be reach to: Rajiv Gandhi Centre for Biotechnology Thycaud PO, Poojappura, Thiruvananthapuram – 695014, Kerala. </p>

<p>More at http://rgcb.res.in/temporary-position-available-10/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38749/clipcrop-a-tool-for-detecting-structural-variations-with-single-base-resolution-using-soft-clipping-information</guid>
	<pubDate>Sun, 20 Jan 2019 06:34:36 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38749/clipcrop-a-tool-for-detecting-structural-variations-with-single-base-resolution-using-soft-clipping-information</link>
	<title><![CDATA[ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information]]></title>
	<description><![CDATA[<p><span>ClipCrop for detecting SVs with single-base resolution using soft-clipping information. A soft-clipped sequence is an unmatched fragment in a partially mapped read. To assess the performance of ClipCrop with other SV-detecting tools, we generated various patterns of simulation data &ndash; SV lengths, read lengths, and the depth of coverage of short reads &ndash; with insertions, deletions, tandem duplications, inversions and single nucleotide alterations in a human chromosome.&nbsp;</span></p><p>Address of the bookmark: <a href="https://github.com/shinout/clipcrop" rel="nofollow">https://github.com/shinout/clipcrop</a></p>]]></description>
	<dc:creator>BioJoker</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23577/senior-research-fellow-srf-bioinformatics-at-aiims-india</guid>
  <pubDate>Tue, 04 Aug 2015 03:14:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Research Fellow (SRF) Bioinformatics at AIIMS, India]]></title>
  <description><![CDATA[
<p>DEPARTMENT OF BIOTECHNOLOGY<br />ALL INDIA INSTITUTE OF MEDICAL SCIENCES<br />NEW DELHI-110029</p>

<p>Requirement of Senior Research Fellow Applications are invited for the following vacancy under Research project entitled “Exploiting temporal transcription profile, computational analysis and post-transcriptional gene silencing to identify and intercept interactions between host and dormant and actively replicating Mycobacterium tuberculosis”</p>

<p>Senior Research Fellow One</p>

<p>M.Sc. Degree in Biotechnology/ /Microbiology/Bioinformatics and 2 years research experience in the relevant field NET/GATE Qualification with at least 2 years research experience in M. tuberculosis culture and related techniques as well as transcriptome data generation and analysis.</p>

<p>1 year</p>

<p>1. Age relaxation for SC/ST/OBC/PH Candidates will be as per the government rules.</p>

<p>2. Qualification/degree should be from a reputed Institution/University.</p>

<p>3. Mere fulfilling the essential qualification/experience does not guarantee selection.</p>

<p>4. Canvassing in any form will be a disqualification.</p>

<p>5. No TA/DA will be paid either for attending the interview or joining the post.</p>

<p>Interested candidates are to submit their Curriculum Vitae by 5 PM on 17th August, 2015 to Room No.107, Department of Biotechnology, AIIMS, New Delhi-29.</p>

<p>Only shortlisted candidates will be notified by email for interview</p>

<p>Advertisement:</p>

<p>www.aiims.edu/images/pdf/recruitment/advertisement/advertisement%20of%20SRF_N1306.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40707/vt-a-variant-tool-set-that-discovers-short-variants-from-next-generation-sequencing-data</guid>
	<pubDate>Tue, 28 Jan 2020 03:44:43 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40707/vt-a-variant-tool-set-that-discovers-short-variants-from-next-generation-sequencing-data</link>
	<title><![CDATA[vt: a variant tool set that discovers short variants from Next Generation Sequencing data.]]></title>
	<description><![CDATA[<p><span>vt is a variant tool set that discovers short variants from Next Generation Sequencing data.</span></p>
<p><span><a href="https://genome.sph.umich.edu/wiki/Vt">https://genome.sph.umich.edu/wiki/Vt</a></span></p>
<p><a href="https://github.com/atks/vt">https://github.com/atks/vt</a></p><p>Address of the bookmark: <a href="https://genome.sph.umich.edu/wiki/Vt" rel="nofollow">https://genome.sph.umich.edu/wiki/Vt</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23686/bioinformatics-symposium</guid>
  <pubDate>Tue, 11 Aug 2015 04:02:59 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Symposium]]></title>
  <description><![CDATA[
<p>This 2 day symposium will focus on topics in the below mentioned areas.</p>

<p>Experts from India and Japan in this fields will deliver lectures and contribute in discussions. This will provide an opportunity to the participants to interact and learn.</p>

<p>Topics:</p>

<p>    Algorithms for biomolecular Sequences / Structures<br />    Bioinformatics databases and tools<br />    High performance computing<br />    Large scale data analysis<br />    Protein function<br />    Structure based drug design<br />    Applications to specific diseases</p>

<p>More at http://www.iitm.ac.in/bioinfo/Symposium-2015/index.html</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41669/filtlong-quality-filtering-tool-for-long-reads</guid>
	<pubDate>Wed, 13 May 2020 10:23:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41669/filtlong-quality-filtering-tool-for-long-reads</link>
	<title><![CDATA[Filtlong: quality filtering tool for long reads]]></title>
	<description><![CDATA[<p>Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter.</p>
<p>Filtlong builds into a stand-alone executable:</p>
<pre><code>git clone https://github.com/rrwick/Filtlong.git
cd Filtlong
make -j
bin/filtlong -h
</code></pre><p>Address of the bookmark: <a href="https://github.com/rrwick/Filtlong" rel="nofollow">https://github.com/rrwick/Filtlong</a></p>]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/fun/view/23959/bioinformatics-jokes</guid>
	<pubDate>Fri, 21 Aug 2015 01:26:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/fun/view/23959/bioinformatics-jokes</link>
	<title><![CDATA[Bioinformatics Jokes !!]]></title>
	<description><![CDATA[<p>Why was the Bioinformatics fired from his job?</p><p>A: He was getting too Sassy.</p><p>&nbsp;</p><p>What did the bioinformatician say when he found out his team stopped using version control?</p><p>A: Y&rsquo;all better Git!</p><p>&nbsp;</p><p>Why did the computational biologist stay home from work?</p><p>A: He had a code!</p><p>&nbsp;</p><p>Why was the bioinformatician's paper was rejected?</p><p>A: Journal thought it seemed scripted.</p><p>&nbsp;</p><p>How can you tell that a Bioinformatics is working?</p><p>A: You can hear him Grunting!</p><p>&nbsp;</p><p>Why bioinformatician always silence?</p><p>A: Because bioinformatician calmly whisper, &ldquo;SSH&rdquo;</p><p>&nbsp;</p><p>Why was the bioinformatician always so sleepy?</p><p>A: He/She wasn&rsquo;t given any Java.</p><p>&nbsp;</p><p>Why did the program/software hanged?</p><p>A: Because genome float.</p><p>&nbsp;</p><p>Why was the class upset that its parent died?</p><p>A: Because it wouldn&rsquo;t be getting the inheritance!</p><p>&nbsp;</p><p>Why did bioinformatician always works on the command line?</p><p>A: Because they don't want to scare you with huge amount of data!</p><p>&nbsp;</p><p>Why did the bioinformatician attend the gay pride parade?</p><p>A: They supported polymorphism.</p><p>&nbsp;</p><p>Why did bioinformatician prefer awk, PerlOneliner?</p><p>A: Because even computer can't handle to load the data.</p><p>&nbsp;</p><p>Why don&rsquo;t bioinformatician get along with others?</p><p>A: They&rsquo;re too MEAN.</p><p>&nbsp;</p><p>Why computational biologist are cool?</p><p>A: Because they are scripted!!</p><p>&nbsp;</p><p>Why they talk $ unzip; strip; touch; finger; grep; mount; fsck; more; yes; fsck; fsck; umount; clean; sleep;</p><p>A: Ah, Ohhh, dude, these are *NIX commands</p><p>&nbsp;</p><p>Did they really hack genome?</p><p>A: Yes, I guess so.</p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41920/liftoff-an-accurate-tool-that-maps-annotations-in-gff-or-gtf-between-assemblies</guid>
	<pubDate>Tue, 30 Jun 2020 21:40:52 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41920/liftoff-an-accurate-tool-that-maps-annotations-in-gff-or-gtf-between-assemblies</link>
	<title><![CDATA[Liftoff: an accurate tool that maps annotations in GFF or GTF between assemblies]]></title>
	<description><![CDATA[<p><span>&nbsp;Liftoff, an accurate tool that maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated &ldquo;chain&rdquo; file as input, Liftoff is a standalone tool that takes two genome assemblies and a reference annotation as input and outputs an annotation of the target genome.&nbsp;</span></p><p>Address of the bookmark: <a href="https://github.com/agshumate/Liftoff" rel="nofollow">https://github.com/agshumate/Liftoff</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24178/essentials-of-statistics-and-data-analysis-using-r</guid>
  <pubDate>Mon, 31 Aug 2015 01:32:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[Essentials of Statistics and Data Analysis using R]]></title>
  <description><![CDATA[
<p>Clinical Development Services Agency (CDSA) is an extramural unit of Translational Health Science and Technology Institute (THSTI), Department of Biotechnology, Ministry of Science &amp; Technology, Government of India. CDSA has a national mandate of strengthening capacity and capability building in the area of Clinical development and Translational Research.</p>

<p>CDSA is pleased to announce a 4 days hands-on training program on “Essentials of Statistics and Data Analysis using R” at ICGEB, Aruna Asaf Ali Road, New Delhi on December 1 – 4, 2015. This will involve developing and enhancing skills to understand basic principles of statistics for summarizing data and use of appropriate statistical tests as well as providing an understanding of data analysis using R. Didactic lectures with practical sessions will be delivered by experienced faculties from AIIMS and Novartis. Live classroom with power point presentations, case studies, mock exercise, practical sessions on R, group work with time for discussion and Q&amp;A sessions are added advantages of this workshop.</p>

<p>Please contact gayatrivishwakarma.cdsa@thsti.res.in or vineetabaloni.cdsa@thsti.res.in for program and registration details.</p>

<p>Please nominate personage or register yourself on or before November 6, 2015 along with the electronic transfer of registration fee.</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42160/vicuna-a-software-tool-that-enables-consensus-assembly-of-ultra-deep-sequence-derived-from-diverse-viral-or-other-heterogeneous-populations</guid>
	<pubDate>Tue, 25 Aug 2020 03:40:17 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42160/vicuna-a-software-tool-that-enables-consensus-assembly-of-ultra-deep-sequence-derived-from-diverse-viral-or-other-heterogeneous-populations</link>
	<title><![CDATA[VICUNA: a software tool that enables consensus assembly of ultra-deep sequence derived from diverse viral or other heterogeneous populations.]]></title>
	<description><![CDATA[<p><span>VICUNA</span><span>&nbsp;is a&nbsp;</span><em>de novo</em><span>&nbsp;assembly program targeting populations with high mutation rates. It creates a single linear representation of the mixed population on which intra-host variants can be mapped. For clinical samples rich in contamination (e.g., &gt;95%), VICUNA can leverage existing genomes, if available, to assemble only target-alike reads. After initial assembly, it can also use existing genomes to perform guided merging of contigs. For each data set (e.g., Illumina paired read, 454), VICUNA outputs consensus sequence(s) and the corresponding multiple sequence alignment of constituent reads. VICUNA efficiently handles ultra-deep sequence data with tens of thousands fold coverage.</span></p>
<p><a href="http://software.broadinstitute.org/viral/docs/vicuna_v1.0.pdf">http://software.broadinstitute.org/viral/docs/vicuna_v1.0.pdf</a></p><p>Address of the bookmark: <a href="https://www.broadinstitute.org/viral-genomics/vicuna" rel="nofollow">https://www.broadinstitute.org/viral-genomics/vicuna</a></p>]]></description>
	<dc:creator>biogeek</dc:creator>
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