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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31881?offset=490</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23379/jrf-in-bioinformatics-tezpur-universityn</guid>
  <pubDate>Fri, 17 Jul 2015 19:42:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF in Bioinformatics @ Tezpur Universityn]]></title>
  <description><![CDATA[
<p>Tezpur University: Napaam – 784 028:</p>

<p>Assam Applications are invited for Walk-in-Interview for the following temporary positions in the MHRD sponsored Centre of Excellence under FAST project entitled “Machine Learning Research and Big Data Analysis” under the Principal Investigator Professor D.K. Bhattacharyya, Department of Computer Science &amp; Engineering, Tezpur University.</p>

<p>Position : Senior Research Fellows (SRFs) in the field of (i) Bioinformatics (ii) Natural Language Processing / Speech Processing (iii) Cognitive Radio Networks / Optical Networks (iv) Network Security. No. of Positions : Five (05).</p>

<p>Qualification : First class in ME / M. Tech. in CSE / IT / ECE with research experience in relevant fields of research. Candidates having valid GATE / NET score shall be preferred.</p>

<p>Fellowship : Rs. 18,000/- (Rupees Eighteen Thousand) only per month.</p>

<p>Duration : Two (02) years and may be extended depending on status of the project.</p>

<p>Position : Junior Research Fellows (JRFs) in the field of Bioinformatics</p>

<p>No. of Positions : One (01).</p>

<p>Qualification : First class in B. Tech. in CSE / IT/ ECE or MCA with consistently good academic records. Candidates with M. Tech. in CSE / IT / ECE shall be preferred.</p>

<p>Fellowship : Rs. 12,000/- (Rupees twelve Thousand) only per month.</p>

<p>Duration : Two (02) years and may be extended depending on status of the project.</p>

<p>Interested candidates may send their application on plain paper by post along with his/her educational qualifications, research experience certificates (for Senior Research Fellow), 02 copies of recent passport/stamp size photograph and contact phone number to Prof. D.K. Bhattacharyya, Principal Investigator, Department of Computer Science &amp; Engineering, Tezpur University, Napaam- 784028 or mail it to dkb@tezu.ernet.in (or to smh@tezu.ernet.in) within 15 days of publication of this advertisement.</p>

<p>Advertisement: www.tezu.ernet.in/ProjectWalkin/Advt_CoE_5816-A.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37837/clipcrop-a-tool-for-detecting-structural-variations-with-single-base-resolution-using-soft-clipping-information</guid>
	<pubDate>Thu, 04 Oct 2018 16:39:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37837/clipcrop-a-tool-for-detecting-structural-variations-with-single-base-resolution-using-soft-clipping-information</link>
	<title><![CDATA[ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information]]></title>
	<description><![CDATA[<p>This is a tool for detecting structural variations using soft-clipping information From&nbsp;<a href="http://samtools.sourceforge.net/SAM1.pdf">SAM</a>&nbsp;files.</p>
<p>https://github.com/shinout/clipcrop</p><p>Address of the bookmark: <a href="https://github.com/shinout/clipcrop" rel="nofollow">https://github.com/shinout/clipcrop</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23493/srf-post-in-nehu-shillong</guid>
  <pubDate>Sat, 25 Jul 2015 20:09:50 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF post in NEHU, Shillong]]></title>
  <description><![CDATA[
<p>Dept of Biochemistry<br />North-Eastern Hill University<br />Umshing, Shillong- 793 022</p>

<p>Applications are invited for the post of Senior Research Fellow- SRF (one) and Junior Research Fellow- JRF (one) to be appointed in a SERB-funded major research project entitled “Biochemical and functional properties of Synechocystis Glutathione S-transferase(s)” sanctioned to Dr. Timir Tripathi, Molecular and Structural Biophysics Laboratory, Department of Biochemistry, NEHU, Shillong.</p>

<p>Essential Qualifications: For both positions M.Sc. or equivalent with a good academic record is a prerequisite.</p>

<p>For Project-SRF, experience in bioinformatics/computational biology is required, which should be evident by publications.</p>

<p>Students waiting for their last semester result can apply for JRF position.</p>

<p>Stipend: As per SERB norms.</p>

<p>Interested students can email their detailed bio-data including mobile number and recent photograph to msb.biochem@gmail.com, latest by 01.08.15. The hard copy is not required at this stage.</p>

<p>The date of interview will be informed after primary scrutiny of the applications. No TA/DA will be paid if called for interview. P.S: Students applied for the same post as per date 01.06.15, need not to apply again as their application will be considered in this advertisement also.</p>

<p>For details of the research work of the PI’s group kindly visit www.ttripathi.webs.com</p>

<p>Dr. Timir Tripathi Principal Investigator DST-SERB Project Department of Biochemistry NEHU, Shillong</p>

<p>Advertisement: www.nehu.ac.in/Advertisements/BiochemPVAdvtTT_200715.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39728/patterns-a-modeling-tool-dedicated-to-biological-network-modeling</guid>
	<pubDate>Fri, 26 Jul 2019 01:11:59 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39728/patterns-a-modeling-tool-dedicated-to-biological-network-modeling</link>
	<title><![CDATA[Patterns: a modeling tool dedicated to biological network modeling]]></title>
	<description><![CDATA[<p>It is designed to work with <strong>patterned data</strong>. Famous examples of problems related to patterned data are:</p>
<ul>
<li>recovering <strong>signals</strong> in networks after a <strong>stimulation</strong> (cascade network reverse engineering),</li>
<li>analysing <strong>periodic signals</strong>.</li>
</ul><p>Address of the bookmark: <a href="https://github.com/fbertran/Patterns" rel="nofollow">https://github.com/fbertran/Patterns</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23673/ra-bioinformatics-at-alagappa-university</guid>
  <pubDate>Sat, 08 Aug 2015 01:36:35 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Alagappa University]]></title>
  <description><![CDATA[
<p>RA Bioinformatics</p>

<p>Eligibility : MSc(Bio-Chemistry, Bio-Informatics, Bio-Tech)</p>

<p>Location : Chennai</p>

<p>Last Date : 20 Aug 2015</p>

<p>Hiring Process : Walk - In<br />Alagappa University - Job Details</p>

<p>RA Bioinformatics Job position in Alagappa University</p>

<p>Qualification: M.Sc., in Bioinformatics/Biotechnology/Biophysics/Biochemistry/ Life Sciences</p>

<p>No.of Post: One</p>

<p>Salary : Rs. 11000<br />How to apply</p>

<p>A walk-in Interview will be held at the Department of Biotechnology, Alagappa University, Science Campus, Karaikudi 630 004 on 20.08.2015 (Thursday) at 10.30 AM.</p>

<p>Interested candidates are encouraged to send their Curriculum Vitae by email in advance. On the day of interview, the candidates must produce original certificates in proof of their educational qualification and experience and a recommendation letter from the Head of the Department/Institution where last studied/worked. Candidates who have already passed the required Degree alone are eligible to appear for interview.</p>

<p>Click Here for more http://alagappauniversity.ac.in/files/news_files/Notification.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41046/iseqqc-a-tool-for-expression-based-quality-control-in-rna-sequencing</guid>
	<pubDate>Sun, 16 Feb 2020 08:47:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41046/iseqqc-a-tool-for-expression-based-quality-control-in-rna-sequencing</link>
	<title><![CDATA[iSeqQC: a tool for expression-based quality control in RNA sequencing]]></title>
	<description><![CDATA[<p><span>iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSeqQC implements various statistical approaches including unsupervised clustering, agglomerative hierarchical clustering and correlation coefficients to provide insight into outliers.</span></p>
<p><a href="http://cancerwebpa.jefferson.edu/iSeqQC/">http://cancerwebpa.jefferson.edu/iSeqQC/</a></p>
<p><a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3399-8">https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3399-8</a></p><p>Address of the bookmark: <a href="https://github.com/gkumar09/iSeqQC" rel="nofollow">https://github.com/gkumar09/iSeqQC</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/23892/bioinformatics-made-easy-search-bioinformatics-tools-and-run-genomic-analysis-in-the-cloud</guid>
	<pubDate>Thu, 20 Aug 2015 02:21:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/23892/bioinformatics-made-easy-search-bioinformatics-tools-and-run-genomic-analysis-in-the-cloud</link>
	<title><![CDATA[Bioinformatics Made Easy Search: Bioinformatics tools and run genomic analysis in the cloud]]></title>
	<description><![CDATA[<p>InsideDNA makes hundreds of bioinformatics tools immediately available to run via an easy-to-use web interface and allows an accurate search across all functions, tools and pipelines.</p>
<p>With InsideDNA, you can upload and store your own genomic/genetic datasets in a limitless cloud space, and instantly analyze it with a powerful compute instance, without any tool installation or set up hassle.</p>
<p>More at https://insidedna.me/</p><p>Address of the bookmark: <a href="https://insidedna.me/" rel="nofollow">https://insidedna.me/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41686/catbat-tool-for-taxonomic-classification-of-contigs-and-metagenome-assembled-genomes-mags</guid>
	<pubDate>Mon, 18 May 2020 10:53:32 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41686/catbat-tool-for-taxonomic-classification-of-contigs-and-metagenome-assembled-genomes-mags</link>
	<title><![CDATA[CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)]]></title>
	<description><![CDATA[<p>Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formated appropriately (see <a href="https://github.com/dutilh/CAT#usage">Usage</a>).</p><p>Address of the bookmark: <a href="https://github.com/dutilh/CAT" rel="nofollow">https://github.com/dutilh/CAT</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24036/jrf-position-%E2%80%93-international-institute-of-information-technology-hyderabad</guid>
  <pubDate>Mon, 24 Aug 2015 22:44:46 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Position – International Institute of Information Technology, Hyderabad]]></title>
  <description><![CDATA[
<p>International Institute of Information Technology, Hyderabad</p>

<p>Center for Computational Natural Sciences and Bioinformatics</p>

<p>Junior Research Fellowship Position</p>

<p>Applications are invited for one JRF position in the following DAE sponsored project.</p>

<p>Title of the project: Insight into the Structure–Function Relationships of Chemically Modified Nucleic Acids: A Molecular Dynamics Simulations Study.</p>

<p>The above project involves theoretical modelling and simulations on chemically modified nucleic acids to investigate their structures, dynamics and thermodynamic stabilities.</p>

<p>Desired qualification: M.Sc. in Chemistry/ Bioinformatics; GATE/UGC-CSIR NET qualification.</p>

<p>To apply: Send detailed curriculum vitae by e-mail to the following address on or before 31 August 2015: Prof. U. Deva Priyakumar (devalab@iiit.ac.in), CCNSB, IIIT-H, Gachibowli, Hyderabad 500 032.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42143/sibelia-a-comparative-genomics-tool</guid>
	<pubDate>Sat, 22 Aug 2020 02:49:00 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42143/sibelia-a-comparative-genomics-tool</link>
	<title><![CDATA[Sibelia: A comparative genomics tool]]></title>
	<description><![CDATA[<p><strong>Sibelia</strong>: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms.&nbsp;</p>
<p><strong>Sibelia</strong>&nbsp;is useful in finding: (1) shared regions, (2) regions that present in one group of genomes but not in others, (3) rearrangements that transform one genome to other genomes.</p>
<p>More at&nbsp;<a href="http://bioinf.spbau.ru/sibelia">http://bioinf.spbau.ru/sibelia</a></p>
<p>Sibelia docs&nbsp;<a href="http://gensoft.pasteur.fr/docs/Sibelia/3.0.7/SIBELIA.md">http://gensoft.pasteur.fr/docs/Sibelia/3.0.7/SIBELIA.md</a></p><p>Address of the bookmark: <a href="https://github.com/bioinf/Sibelia" rel="nofollow">https://github.com/bioinf/Sibelia</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

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