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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/31976?offset=560</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/11311/stephen-friend-the-hunt-for-unexpected-genetic-heroes</guid>
	<pubDate>Sat, 31 May 2014 14:31:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/11311/stephen-friend-the-hunt-for-unexpected-genetic-heroes</link>
	<title><![CDATA[Stephen Friend: The hunt for "unexpected genetic heroes"]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/Yagdvqn2YMU" frameborder="0" allowfullscreen></iframe>What can we learn from people with the genetics to get sick — who don't? With most inherited diseases, only some family members will develop the disease, while others who carry the same genetic risks dodge it. Stephen Friend suggests we start studying those family members who stay healthy. Hear about the Resilience Project, a massive effort to collect genetic materials that may help decode inherited disorders.

TEDTalks is a daily video podcast of the best talks and performances from the TED Conference, where the world's leading thinkers and doers give the talk of their lives in 18 minutes (or less). Look for talks on Technology, Entertainment and Design -- plus science, business, global issues, the arts and much more.
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12896/inspire-faculty-scheme-a-component-of-%E2%80%9Cassured-opportunity-for-research-career-aorc%E2%80%9D-under-inspire</guid>
  <pubDate>Sat, 19 Jul 2014 14:59:30 -0500</pubDate>
  <link></link>
  <title><![CDATA[INSPIRE Faculty Scheme: a component of “Assured Opportunity for Research Career (AORC)” under INSPIRE.]]></title>
  <description><![CDATA[
<p>Ministry of Science and Technology, Department of Science and Technology</p>

<p>7th ADVERTISEMENT – 2014 (2)</p>

<p>INSPIRE Faculty Scheme: a component of “Assured Opportunity for Research Career (AORC)” under INSPIRE.</p>

<p>The Department of Science and Technology, Government of India, has launched the “Innovation in Science Pursuit for Inspired Research (INSPIRE)” [http://www.inspire-dst.gov.in] program in 2008.</p>

<p>The program aims to attract talent for study of science and careers with research. INSPIRE includes many components. The importance of Assured Career Opportunity in R&amp;D sector has been recognized.</p>

<p>INSPIRE Faculty Scheme opens up an “Assured Opportunity for Research Career (AORC)” for young researchers in the age group of 27-32 years. It offers a contractual research awards to young achievers and opportunity for independent research in the near term and emerge as a future leader in the long term.</p>

<p>Eligibility</p>

<p>Essential Indian citizens and people of Indian origin including NRI/PIO status with PhD (in science, mathematics, engineering, pharmacy, medicine, and agriculture related subjects) from any recognized university in the world,</p>

<p>Those who have submitted their PhD Theses and are awaiting award of the degree are also<br />eligible. However, the award will be conveyed only after confirmation of the awarding the<br />PhD degree.</p>

<p>The upper age limit as on 1st July 2014 should be 32 years for considering support for a<br />period of 5 years. However, for SC and ST candidates, upper age limit will be 35 years.</p>

<p>Publication(s) in highly reputed Journals demonstrating research potential of the candidate.</p>

<p>Desirable</p>

<p>Candidates who are within top 1% at the School Leaving Examination, IIT-JEE rank, 1st Rank Holder either in graduation or post-graduation level university examination (which are used presently for identifying INSPIRE Scholars at under-graduate level and INSPIRE Fellows for doctoral degree)</p>

<p>More at http://www.inspire-dst.gov.in/faculty_scheme.html</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/40736/list-of-perl-special-symbols</guid>
	<pubDate>Tue, 28 Jan 2020 06:44:27 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/40736/list-of-perl-special-symbols</link>
	<title><![CDATA[List of perl special symbols !]]></title>
	<description><![CDATA[<p><span>There are some variables which have a predefined and special meaning in Perl. They are the variables that use punctuation characters after the usual variable indicator ($, @, or %), such as $_ ( explained below ).</span></p><p>Special Symbols &ndash; File handlers</p><blockquote><p>$@ Perl error string</p><p>$! Error number from C, &lsquo;errno&rsquo;</p><p>$^E Extended OS error info, such as &lsquo;CDROM tray not closed&rsquo;</p><p>$? Exit status from last process</p><p>$AGRV &ndash; name of current file</p><p>@ARGV &ndash; command line arguments</p><p>$ARGV &ndash; special file handle for command line filenames</p><p>$. &ndash; current line number</p><p>$/ - input line delimiter</p><p>$\ - output line delimiter</p><p>$% - current page number</p><p>$&amp;/${^MATCH} &ndash; last successful matching string</p><p>$`/${^PREMATCH} &ndash; the string preceding the last matching string</p><p>$&rsquo;/${^POSTMATCH} &ndash; the string following the last matching string</p><p>$1, $2, &hellip; - matching groups in the parentheses in pattern</p></blockquote><p>More at&nbsp;<a href="https://www.tutorialspoint.com/perl/perl_special_variables.htm">https://www.tutorialspoint.com/perl/perl_special_variables.htm</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/44371/steps-to-find-all-the-repeats-in-the-genome</guid>
	<pubDate>Thu, 31 Aug 2023 02:43:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/44371/steps-to-find-all-the-repeats-in-the-genome</link>
	<title><![CDATA[Steps to find all the repeats in the genome !]]></title>
	<description><![CDATA[<div><p>To find repeats in a genome from 2 to 9 length using a Perl script, you can use the RepeatMasker tool with the "--length" option<a href="https://mobilednajournal.biomedcentral.com/articles/10.1186/1759-8753-5-13" target="_blank">[0]</a>. Here's a step-by-step guide:</p></div><div><ol>
<li>Install RepeatMasker: First, you need to install RepeatMasker on your system. You can download it from the RepeatMasker website<a href="https://mobilednajournal.biomedcentral.com/articles/10.1186/1759-8753-5-13" target="_blank">[0]</a>.</li>
</ol></div><div><ol>
<li>Prepare the genome sequence: Make sure you have the genome sequence in a FASTA file format. Let's assume the file is named "genome.fasta".</li>
</ol><blockquote><p>./RepeatMasker -pa &lt;number_of_processors&gt; -nolow -norna -no_is -div &lt;divergence_value&gt; -lib RepeatMaskerLib.embl -gff -xsmall -small -poly -species &lt;species_name&gt; -dir &lt;output_directory&gt; -length &lt;min_length&gt;-&lt;max_length&gt; genome.fasta</p></blockquote><div><p>Replace the following placeholders with appropriate values:</p><ul>
<li><code>&lt;number_of_processors&gt;</code>: The number of processors/threads you want to use for parallel processing.</li>
<li><code>&lt;divergence_value&gt;</code>: The divergence value for the species you are analyzing. You can find divergence values for different species in the RepeatMasker documentation<a href="https://mobilednajournal.biomedcentral.com/articles/10.1186/1759-8753-5-13" target="_blank">[0]</a>.</li>
<li><code>&lt;species_name&gt;</code>: The name of the species you are analyzing.</li>
<li><code>&lt;output_directory&gt;</code>: The directory where you want the output files to be saved.</li>
<li><code>&lt;min_length&gt;</code>&nbsp;and&nbsp;<code>&lt;max_length&gt;</code>: The minimum and maximum lengths of the repeats you want to find (in this case, 2 and 9).</li>
</ul></div><div><ol>
<li>Analyze the output: RepeatMasker will generate several output files, including a .out file. You can parse this file to extract the information you need. There is a Perl tool called "one_code_to_find_them_all.pl" that can help you parse RepeatMasker output files<a href="https://mobilednajournal.biomedcentral.com/articles/10.1186/1759-8753-5-13" target="_blank">[0]</a>. You can download it from the source provided.</li>
</ol></div><div><ol>
<li>Use the provided Perl script: Once you have the "one_code_to_find_them_all.pl" script, you can run it to conveniently parse the RepeatMasker output files. Here's an example of how to use it:</li>
</ol><blockquote><p>perl one_code_to_find_them_all.pl --rm &lt;RepeatMasker_out_file&gt; --length &lt;length_file&gt;</p></blockquote></div><p>&nbsp;</p></div><div><div><p>Replace&nbsp;<code>&lt;RepeatMasker_out_file&gt;</code>&nbsp;with the path to your RepeatMasker .out file, and&nbsp;<code>&lt;length_file&gt;</code>&nbsp;with the path to a file containing the lengths of the reference elements.</p></div><div><p>This script will generate several output files, including .log.txt and .copynumber.csv, which contain quantitative information about the identified repeat elements.</p></div><div><p>Remember to adjust the parameters and options according to your specific needs and the characteristics of your genome.</p></div></div>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/11603/ncbi-webinar</guid>
	<pubDate>Sun, 08 Jun 2014 02:47:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/11603/ncbi-webinar</link>
	<title><![CDATA[NCBI Webinar]]></title>
	<description><![CDATA[<p>In less than two weeks, NCBI will offer a webinar entitled "Introducing 3 NCBI Resources to Navigate Testing for Disease Linked Variants: MedGen, GTR and ClinVar". This webinar will delve into the lifecycle of genetic testing and teach attendees how to navigate the NIH Genetic Testing Registry, ClinVar, and MedGen resources. These resources can be used to prepare for clinical cases, access detailed information about orderable genetic tests, interpret test results, and more.</p><p>More at https://attendee.gotowebinar.com/register/8452228815737989634</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/33841/awesome-perl-frameworks-libraries-and-software-part-4</guid>
	<pubDate>Fri, 07 Jul 2017 04:11:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/33841/awesome-perl-frameworks-libraries-and-software-part-4</link>
	<title><![CDATA[Awesome perl frameworks, libraries and software - PART 4]]></title>
	<description><![CDATA[<ul>
<li><a href="https://github.com/tjstein/php5-fpm-munin-plugins">tjstein/php5-fpm-munin-plugins</a>&nbsp;- A set of Munin plugins for PHP5-FPM</li>
<li><a href="https://github.com/perusio/nginx-munin">perusio/nginx-munin</a>&nbsp;- A set of plugins for monitoring nginx with Munin</li>
<li><a href="https://github.com/openresty/lua-resty-memcached">openresty/lua-resty-memcached</a>&nbsp;- Lua memcached client driver for the ngx_lua based on the cosocket API</li>
<li><a href="https://github.com/jayjanssen/myq_gadgets">jayjanssen/myq_gadgets</a>&nbsp;- Various iostat style scripts for MySQL</li>
<li><a href="https://github.com/apt-mirror/apt-mirror">apt-mirror/apt-mirror</a>&nbsp;- Official apt-mirror source.</li>
<li><a href="https://github.com/kentaro/cinnamon">kentaro/cinnamon</a>&nbsp;- a simple deploy tool</li>
<li><a href="https://github.com/mdom/dategrep">mdom/dategrep</a>&nbsp;- print lines matching a date range</li>
<li><a href="https://github.com/kazuho/jailing">kazuho/jailing</a>&nbsp;- super-easy chroot jail builder/runner for Linux</li>
<li><a href="https://github.com/teleshoes/tpacpi-bat">teleshoes/tpacpi-bat</a>&nbsp;- ThinkPad ACPI Battery Util</li>
<li><a href="https://github.com/hechtus/squeezebox-googlemusic">hechtus/squeezebox-googlemusic</a>&nbsp;- Squeezebox (Logitech Media Server) Plugin for Google Play Music</li>
<li><a href="https://github.com/hexchat/hexchat-addons">hexchat/hexchat-addons</a>&nbsp;- Plugins and scripts made for HexChat</li>
<li><a href="https://github.com/berekuk/Ubic">berekuk/Ubic</a>&nbsp;- Polymorphic service manager.</li>
<li><a href="https://github.com/deryckoe/Wordpress-Syntax-Mode-for-Coda-2">deryckoe/Wordpress-Syntax-Mode-for-Coda-2</a>&nbsp;- Wordpress Syntax Mode working on Coda 2.0.2</li>
<li><a href="https://github.com/squentin/gmusicbrowser">squentin/gmusicbrowser</a>&nbsp;- jukebox for large collections of music</li>
<li><a href="https://github.com/autodl-community/autodl-irssi">autodl-community/autodl-irssi</a>&nbsp;- A community-driven fork of autodl-irssi</li>
<li><a href="https://github.com/yoshiki/markdown2impress">yoshiki/markdown2impress</a>&nbsp;- markdown2impress is script to convert markdown into presentation using impress.js.</li>
<li><a href="https://github.com/pagespeed/cpanel">pagespeed/cpanel</a>&nbsp;- mod_pagespeed module for CPanel WHM</li>
<li><a href="https://github.com/liyanage/xcode-text-macros">liyanage/xcode-text-macros</a>&nbsp;- Some XCode text macros plus a macro overview HTML page generator</li>
<li><a href="https://github.com/erlang/eep">erlang/eep</a>&nbsp;- Erlang Enhancement ProposalS</li>
<li><a href="https://github.com/Koha-Community/Koha">Koha-Community/Koha</a>&nbsp;- Koha is a free software integrated library system (ILS). Koha is distributed under the GNU GPL version 3 or later. Note: this is a synced mirror of the official Koha repo.</li>
<li><a href="https://github.com/vti/bootylicious">vti/bootylicious</a>&nbsp;- LIghtweight blog engine on Mojo steroids!</li>
<li><a href="https://github.com/tokuhirom/Furl">tokuhirom/Furl</a>&nbsp;- pretty fast http client library for perl5</li>
<li><a href="https://github.com/miyagawa/Carmel">miyagawa/Carmel</a>&nbsp;- CPAN Artifact Repository Manager</li>
<li><a href="https://github.com/combinatorylogic/clike">combinatorylogic/clike</a>&nbsp;- A simple C-like language compiler with an extensible syntax and typed macros support</li>
<li><a href="https://github.com/cloudflare/CloudFlare-Tools">cloudflare/CloudFlare-Tools</a>&nbsp;- Tools which enable you to get the full benefit of using the CloudFlare service.</li>
<li><a href="https://github.com/untoldwind/alfred2-layout">untoldwind/alfred2-layout</a>&nbsp;- Alfred 2 Layout workflow</li>
<li><a href="https://github.com/nothingmuch/kiokudb">nothingmuch/kiokudb</a>&nbsp;- KiokuDB Core</li>
<li><a href="https://github.com/katzgrau/chip">katzgrau/chip</a>&nbsp;- A log file multiplexer and monitor. Tail multiple remote or local log files, set actions, and more. A friend to every developer and system admin. Alpha.</li>
<li><a href="https://github.com/SethRobertson/git-what-branch">SethRobertson/git-what-branch</a>&nbsp;- Discover what branch a commit is on, or how it got to a named branch</li>
<li><a href="https://github.com/shabble/irssi-docs">shabble/irssi-docs</a>&nbsp;- In-depth documentation of the Irssi IRC Client</li>
<li><a href="https://github.com/kappa/yadisk-sync">kappa/yadisk-sync</a>&nbsp;- Linux syncronizer for Yandex.Disk</li>
<li><a href="https://github.com/dotse/dnscheck">dotse/dnscheck</a>&nbsp;- DNSCheck code, DNS delegation quality checker.</li>
<li><a href="https://github.com/darold/pgcluu">darold/pgcluu</a>&nbsp;- PostgreSQL Cluster performances monitoring and auditing tool</li>
<li><a href="https://github.com/cfengine/design-center">cfengine/design-center</a>&nbsp;- CFEngine community-contributed content</li>
<li><a href="https://github.com/bestpractical/sd">bestpractical/sd</a>&nbsp;- A distributed issue tracker; upstream is now&nbsp;<a href="http://gitorious.org/prophet">http://gitorious.org/prophet</a></li>
<li><a href="https://github.com/masak/proto">masak/proto</a>&nbsp;- A a hyper-lightweight dependency tracking and project installation system</li>
<li><a href="https://github.com/liblime/LibLime-Koha">liblime/LibLime-Koha</a>&nbsp;- LibLime Koha is the most mature of the open source ILS applications. Based on the ground-breaking 3.0 platform (derived from the original Koha offering of 1999), LibLime Koha is a completely web-based open source ILS, with library staff, systems librarians, and library users all accessing LibLime Koha through a web browser. Relying on the MySQL relational database, all LibLime Koha data is readily accessible.</li>
<li><a href="https://github.com/ingydotnet/...">ingydotnet/...</a>&nbsp;- Dot Dot Dot</li>
<li><a href="https://github.com/gusmaskowitz/apachebuddy.pl">gusmaskowitz/apachebuddy.pl</a>&nbsp;- Not written by me, maintained by me : Apachebuddy.pl</li>
<li><a href="https://github.com/zaf/asterisk-googletts">zaf/asterisk-googletts</a>&nbsp;- Asterisk AGI script that uses Google's translate text to speech service.</li>
<li><a href="https://github.com/openresty/lua-resty-core">openresty/lua-resty-core</a>&nbsp;- New FFI-based API for lua-nginx-module</li>
<li><a href="https://github.com/openSUSE/kiwi">openSUSE/kiwi</a>&nbsp;- KIWI OS Image builder</li>
<li><a href="https://github.com/FastVPSEestiOu/Antidoto">FastVPSEestiOu/Antidoto</a>&nbsp;- Linux antimalware and antirootkit tool</li>
<li><a href="https://github.com/sorin-ionescu/dotfiles">sorin-ionescu/dotfiles</a>&nbsp;- My command line life.</li>
<li><a href="https://github.com/oetiker/smokeping-3.x">oetiker/smokeping-3.x</a>&nbsp;- reengineered SmokePing, using Extopus as its frontend</li>
<li><a href="https://github.com/nekokak/p5-Teng">nekokak/p5-Teng</a>&nbsp;- simple DBI wrapper/ORMapper</li>
<li><a href="https://github.com/faiproject/fai">faiproject/fai</a>&nbsp;- non-interactive system to install, customize and manage Linux systems</li>
<li><a href="https://github.com/abh/ntppool">abh/ntppool</a>&nbsp;- NTP Pool Project</li>
<li><a href="https://github.com/willixix/naglio-plugins">willixix/naglio-plugins</a>&nbsp;- Monitoring Plugins by William Leibzon</li>
<li><a href="https://github.com/stealth/troubleshooter">stealth/troubleshooter</a>&nbsp;- setroubleshootd xSports</li>
<li><a href="https://github.com/openresty/lua-resty-string">openresty/lua-resty-string</a>&nbsp;- String utilities and common hash functions for ngx_lua and LuaJIT</li>
<li><a href="https://github.com/mdxp/cookbooks">mdxp/cookbooks</a>&nbsp;- My custom Cookbooks for Chef</li>
<li><a href="https://github.com/ingydotnet/vroom-pm">ingydotnet/vroom-pm</a>&nbsp;- Vim Based Slideshow Presentations</li>
<li><a href="https://github.com/iamcal/Flickr-StatsD">iamcal/Flickr-StatsD</a>&nbsp;- Mirror of code.flickr.com: Flickr-StatsD</li>
<li><a href="https://github.com/ernstsson/Arqua">ernstsson/Arqua</a>&nbsp;- Architectural quality analysis tool for GCC project</li>
<li><a href="https://github.com/qiaoxueshi/FLEXLoader">qiaoxueshi/FLEXLoader</a>&nbsp;- A jailbreak iOS device tweak which can load FLEX dynamiclly</li>
<li><a href="https://github.com/punchdrunker/iOSEmoji">punchdrunker/iOSEmoji</a>&nbsp;- information about unicode6 emoji used in iOS5</li>
<li><a href="https://github.com/openresty/replace-filter-nginx-module">openresty/replace-filter-nginx-module</a>&nbsp;- Streaming regular expression replacement in response bodies</li>
<li><a href="https://github.com/djabberd/DJabberd">djabberd/DJabberd</a>&nbsp;- The main DJabberd source</li>
<li><a href="https://github.com/darold/pgFormatter">darold/pgFormatter</a>&nbsp;- A PostgreSQL SQL syntax beautifier that can work as a console program or as a CGI. Download from&nbsp;<a href="https://sourceforge.net/p/pgformatter/">https://sourceforge.net/p/pgformatter/</a>&nbsp;and demo site at&nbsp;<a href="http://sqlformat.darold.net/">http://sqlformat.darold.net/</a></li>
<li><a href="https://github.com/aspiers/mysqldiff">aspiers/mysqldiff</a>&nbsp;- tool and CPAN suite backend for comparing MySQL database schemas</li>
<li><a href="https://github.com/michaeldexter/vmrc">michaeldexter/vmrc</a>&nbsp;- Virtual Machine rc script</li>
<li><a href="https://github.com/keydet89/RegRipper2.8">keydet89/RegRipper2.8</a>&nbsp;- RegRipper version 2.8</li>
<li><a href="https://github.com/kazuho/kaztools">kazuho/kaztools</a>&nbsp;- shellscripts and utilities for myself</li>
<li><a href="https://github.com/gknops/adHocGenerate">gknops/adHocGenerate</a>&nbsp;- Wireless ad hoc distribution of iOS applications</li>
<li><a href="https://github.com/book/Act">book/Act</a>&nbsp;- A Conference Toolkit (Git conversion of the Subversion repository)</li>
<li><a href="https://github.com/turingou/docor">turingou/docor</a>&nbsp;- a smart and tiny README maker using default manifest package.json</li>
<li><a href="https://github.com/rjbs/Soviet-Minecraft">rjbs/Soviet-Minecraft</a>&nbsp;- a gross hack for chatty control of Minecraft</li>
<li><a href="https://github.com/osklil/hls-fetch">osklil/hls-fetch</a>&nbsp;- Download and decrypt videos served by the HTTP Live Streaming (HLS) protocol.</li>
<li><a href="https://github.com/alestic/ec2-expire-snapshots">alestic/ec2-expire-snapshots</a>&nbsp;- Delete expired EBS snapshots in Amazon EC2. Install on Ubuntu with: sudo add-apt-repository -y ppa:alestic &amp;&amp; sudo apt-get update &amp;&amp; sudo apt-get install -y ec2-expire-snapshots</li>
<li><a href="https://github.com/rpetrich/objc_api_visibility">rpetrich/objc_api_visibility</a>&nbsp;- Private API checker for iOS. Requires class-dump-z to be in the PATH</li>
<li><a href="https://github.com/mojombo/gollum-demo">mojombo/gollum-demo</a>&nbsp;- Gollum test repo</li>
<li><a href="https://github.com/mikecardwell/gpgit">mikecardwell/gpgit</a>&nbsp;- Encrypt Email using GnuPG and a pipe</li>
<li><a href="https://github.com/lxctl/lxctl">lxctl/lxctl</a>&nbsp;- vzctl like utilities for lxc</li>
<li><a href="https://github.com/justone/dfm">justone/dfm</a>&nbsp;- dotfiles manager</li>
<li><a href="https://github.com/miyagawa/cpanfile">miyagawa/cpanfile</a>&nbsp;- Yet another way to declare CPAN dependencies</li>
<li><a href="https://github.com/imatix/gitdown">imatix/gitdown</a>&nbsp;- Turn github into your publishing platform</li>
<li><a href="https://github.com/grayhemp/pgtoolkit">grayhemp/pgtoolkit</a>&nbsp;- Tools for PostgreSQL maintenance</li>
<li><a href="https://github.com/domm/App-TimeTracker">domm/App-TimeTracker</a>&nbsp;- distributed timetracking from the commandline</li>
<li><a href="https://github.com/xaicron/mysqlenv">xaicron/mysqlenv</a>&nbsp;- mysql binary manager</li>
<li><a href="https://github.com/tagomoris/fluent-agent-lite">tagomoris/fluent-agent-lite</a>&nbsp;- Lightweight log delivery agent works w/ fluentd</li>
<li><a href="https://github.com/openresty/lua-resty-upstream-healthcheck">openresty/lua-resty-upstream-healthcheck</a>&nbsp;- Health Checker for Nginx Upstream Servers in Pure Lua</li>
<li><a href="https://github.com/niXman/mingw-builds">niXman/mingw-builds</a>&nbsp;- Scripts for building the dual-target(32 &amp; 64 bit) MinGW-W64 compilers for 32 and 64 bit Windows</li>
<li><a href="https://github.com/lvc/abi-compliance-checker">lvc/abi-compliance-checker</a>&nbsp;- A tool for checking backward API/ABI compatibility of a C/C++ library</li>
<li><a href="https://github.com/chilts/cil">chilts/cil</a>&nbsp;- DVCS backed issue tracking system</li>
<li><a href="https://github.com/TooTallNate/node-cgi">TooTallNate/node-cgi</a>&nbsp;- An http/stack/connect layer to invoke and serve CGI executables.</li>
<li><a href="https://github.com/CityGenerator/CityGenerator">CityGenerator/CityGenerator</a>&nbsp;- CityGenerator is a tool for generating a setting for Fantasy Roleplaying games.</li>
<li><a href="https://github.com/yoshinorim/mha4mysql-node">yoshinorim/mha4mysql-node</a>&nbsp;- Development tree of Master High Availability Manager and tools for MySQL (MHA), Node (MySQL Server) part</li>
<li><a href="https://github.com/Netflix-Skunkworks/jenkins-cli">Netflix-Skunkworks/jenkins-cli</a>&nbsp;- Simple Jenkins Command Line Interface</li>
<li><a href="https://github.com/vrtadmin/clamav-faq">vrtadmin/clamav-faq</a>&nbsp;- ClamAV FAQ</li>
<li><a href="https://github.com/ssinyagin/gerty">ssinyagin/gerty</a>&nbsp;- A universal framework for device management automation. Eventually a replacement for RANCID... and much more</li>
<li><a href="https://github.com/quran/quran.com-images">quran/quran.com-images</a>&nbsp;- images using fonts from King Fahed Complex / qurancomplex.com</li>
<li><a href="https://github.com/matschaffer/profile">matschaffer/profile</a>&nbsp;- My Bash profile</li>
<li><a href="https://github.com/jigish/dotfiles">jigish/dotfiles</a>&nbsp;- My configs</li>
<li><a href="https://github.com/darold/ora2pg">darold/ora2pg</a>&nbsp;- Ora2Pg is a free tool used to migrate an Oracle database to a PostgreSQL compatible schema. It connects your Oracle database, scan it automaticaly and extracts its structure or data, it then generates SQL scripts that you can load into PostgreSQL.</li>
<li><a href="https://github.com/castaway/dbix-class-book">castaway/dbix-class-book</a>&nbsp;- DBIx::Class book</li>
<li><a href="https://github.com/brucemiller/LaTeXML">brucemiller/LaTeXML</a>&nbsp;- LaTeXML is a TeX and LaTeX to XML translator.</li>
<li><a href="https://github.com/OpenDDRdotORG/OpenDDR-Resources">OpenDDRdotORG/OpenDDR-Resources</a>&nbsp;- OpenDDR resources</li>
<li><a href="https://github.com/revmischa/rtsp-server">revmischa/rtsp-server</a>&nbsp;- Lightweight RTSP/RTP streaming media server</li>
<li><a href="https://github.com/oetiker/znapzend">oetiker/znapzend</a>&nbsp;- zfs backup with remote capabilities and mbuffer integration.</li>
<li><a href="https://github.com/cardinal/cardinal">cardinal/cardinal</a>&nbsp;- Cardinal - Ruby compiler for Parrot</li>
<li><a href="https://github.com/LibreCat/Catmandu">LibreCat/Catmandu</a>&nbsp;-&nbsp;<a href="https://metacpan.org/pod/Catmandu">https://metacpan.org/pod/Catmandu</a></li>
<li><a href="https://github.com/rdvn/zabbix-templates">rdvn/zabbix-templates</a>&nbsp;- Various Zabbix templates</li>
<li><a href="https://github.com/mischat/shareNice">mischat/shareNice</a>&nbsp;- An ethical way of adding social sharing features to your website, without compromising your users' privacy by dropping tracking cookies on them.</li>
<li><a href="https://github.com/kayac/isucon3">kayac/isucon3</a>&nbsp;- ISUCON3</li>
<li><a href="https://github.com/coryarcangel/Pizza-Party-0.1.b">coryarcangel/Pizza-Party-0.1.b</a>&nbsp;- Order pizza over the commandline (circa 2004)</li>
<li><a href="https://github.com/msparks/irssiscripts">msparks/irssiscripts</a>&nbsp;- Scripts for the Irssi IRC client</li>
<li><a href="https://github.com/mogui/MDWamp">mogui/MDWamp</a>&nbsp;- MDWamp is a client side objective-C implementation of the WebSocket subprotocol WAMP.</li>
<li><a href="https://github.com/michaeljamesfitzgerald/Introducing-Regular-Expressions">michaeljamesfitzgerald/Introducing-Regular-Expressions</a>&nbsp;- Example code and target text files for the O'Reilly book Introducing Regular Expressions</li>
<li><a href="https://github.com/jeffreykegler/Marpa--R2">jeffreykegler/Marpa--R2</a>&nbsp;- Parse any language you can describe in BNF -- Release 2</li>
<li><a href="https://github.com/glensc/nagios-plugin-check_raid">glensc/nagios-plugin-check_raid</a>&nbsp;- Nagios/Icinga plugin to check current server's RAID status</li>
<li><a href="https://github.com/futuretap/iTunesFeaturedCheck">futuretap/iTunesFeaturedCheck</a>&nbsp;- Scrapes the App Store and finds out whether an app is featured on either the App Store homepage or in a specific category</li>
<li><a href="https://github.com/yepher/RaZBerry">yepher/RaZBerry</a>&nbsp;- Notes About ZWave and RazBerry</li>
<li><a href="https://github.com/tokuhirom/Minilla">tokuhirom/Minilla</a>&nbsp;- Authorizing tool for CPAN modules</li>
<li><a href="https://github.com/rgeissert/http-redirector">rgeissert/http-redirector</a>&nbsp;- Debian mirrors HTTP redirector</li>
<li><a href="https://github.com/oetiker/rrdtool-2.x">oetiker/rrdtool-2.x</a>&nbsp;- RRDtool 2.x - The Time Series Database</li>
<li><a href="https://github.com/mindreframer/nginx-lua-stuff">mindreframer/nginx-lua-stuff</a>&nbsp;- some libs for NginX-Lua integration</li>
<li><a href="https://github.com/crowbar/barclamp-nagios">crowbar/barclamp-nagios</a>&nbsp;- [UNMAINTAINED] Crowbar Nagios: System Monitoring</li>
<li><a href="https://github.com/andk/cpanpm">andk/cpanpm</a>&nbsp;- CPAN.pm</li>
<li><a href="https://github.com/moritz/ilbot">moritz/ilbot</a>&nbsp;- IRC logging bot and web frontend</li>
<li><a href="https://github.com/meso-cacase/difff">meso-cacase/difff</a>&nbsp;- Webベースのテキスト比較ツール difff《ﾃﾞｭﾌﾌ》</li>
<li><a href="https://github.com/elliotchance/mbzdb">elliotchance/mbzdb</a>&nbsp;- Port of the MusicBrainz database to run on other RDBMSs with replication (previously named MB_MySQL.)</li>
<li><a href="https://github.com/trapd00r/vidir">trapd00r/vidir</a>&nbsp;- edit directory in $EDITOR (better than vim . with netrw)</li>
<li><a href="https://github.com/evalEmpire/gitpan">evalEmpire/gitpan</a>&nbsp;- Git repositories for all of CPAN</li>
<li><a href="https://github.com/pagekite/Colormake">pagekite/Colormake</a>&nbsp;- A simple wrapper around make to colorize the output.</li>
<li><a href="https://github.com/manuelkasper/AS-Stats">manuelkasper/AS-Stats</a>&nbsp;- A simple tool to generate per-AS traffic graphs from NetFlow/sFlow records</li>
<li><a href="https://github.com/kazeburo/Monoceros">kazeburo/Monoceros</a>&nbsp;- PSGI/Plack server with event driven connection manager, preforking workers</li>
<li><a href="https://github.com/justintime/nagios-plugins">justintime/nagios-plugins</a>&nbsp;- Collection of some handy Nagios plugins</li>
<li><a href="https://github.com/justingit/dada-mail">justingit/dada-mail</a>&nbsp;- Dada Mail is a simple, web-based mailing list manager. It totally rules.</li>
<li><a href="https://github.com/grantm/bcvi">grantm/bcvi</a>&nbsp;- Back-channel vi</li>
<li><a href="https://github.com/JeremyJones/Apachetop">JeremyJones/Apachetop</a>&nbsp;- apachetop is a console-based tool for monitoring the threads and overall performance of a set of Apache web servers.</li>
<li><a href="https://github.com/garu/tweetylicious">garu/tweetylicious</a>&nbsp;- a Twitter-like microblogging app in just one file</li>
<li><a href="https://github.com/doujiang24/lua-resty-kafka">doujiang24/lua-resty-kafka</a>&nbsp;- Lua kafka client driver for the ngx_lua based on the cosocket API</li>
<li><a href="https://github.com/HikariKnight/rsu-client">HikariKnight/rsu-client</a>&nbsp;- A git repository for the RuneScape Linux/Unix Client Project</li>
<li><a href="https://github.com/wimpunk/ddclient">wimpunk/ddclient</a>&nbsp;- Fork of the original ddclient code</li>
<li><a href="https://github.com/tokuhirom/tora">tokuhirom/tora</a>&nbsp;- Tora! Tora! Tora!</li>
<li><a href="https://github.com/stepb/urxvt-tabbedex">stepb/urxvt-tabbedex</a>&nbsp;- Tabbed plugin for rxvt-unicode with many enhancements</li>
<li><a href="https://github.com/rafl/moosex-declare">rafl/moosex-declare</a>&nbsp;- Declarative syntax for Moose</li>
<li><a href="https://github.com/pobox/Moonpig">pobox/Moonpig</a>&nbsp;- the moonpig billing system</li>
<li><a href="https://github.com/fink/fink">fink/fink</a>&nbsp;- The fink package manager</li>
<li><a href="https://github.com/theiostream/theos-ref">theiostream/theos-ref</a>&nbsp;- Theos Docs! (because there never was a chapter 2)</li>
<li><a href="https://github.com/robinbowes/flac2mp3">robinbowes/flac2mp3</a>&nbsp;- flac2mp3 is a tool to convert audio files from flac to mp3 format including the copying of tags.</li>
<li><a href="https://github.com/rayman813/coda2-mode-wordpress">rayman813/coda2-mode-wordpress</a>&nbsp;- Wordpress Syntax Mode/Highlight/Autocomplete for Coda 2</li>
<li><a href="https://github.com/hackman/linux-sysadmin-course">hackman/linux-sysadmin-course</a>&nbsp;- Linux System Administration 101</li>
<li><a href="https://github.com/deepakdaswani/whatsapp_discover">deepakdaswani/whatsapp_discover</a>&nbsp;- "Whatsapp Discover" is a tool for getting phone numbers of devices using Whatsapp by real time sniffing from an interface (disabled in this first version) or from a list of pcap files, which can be processed in batch</li>
<li><a href="https://github.com/calio/form-input-nginx-module">calio/form-input-nginx-module</a>&nbsp;- This is a nginx module that reads HTTP POST and PUT request body encoded in "application/x-www-form-urlencoded", and parse the arguments in request body into nginx variables.</li>
<li><a href="https://github.com/bloonix/awesant">bloonix/awesant</a>&nbsp;- Awesant is a log shipper for logstash.</li>
<li><a href="https://github.com/AndriiGrytsenko/openssh-ldap-publickey">AndriiGrytsenko/openssh-ldap-publickey</a>&nbsp;- Wrapper for OpenSSH to store public keys inside the OpenLDAP entry.</li>
<li><a href="https://github.com/nikyoudale/symbolicatecrash-mac">nikyoudale/symbolicatecrash-mac</a>&nbsp;- A version of the symbolicatecrash script that works for Mac app crash logs</li>
<li><a href="https://github.com/mhwest13/Memcached-Munin-Plugin">mhwest13/Memcached-Munin-Plugin</a>&nbsp;- Memcached Munin Plugins</li>
<li><a href="https://github.com/knmnyn/ParsCit">knmnyn/ParsCit</a>&nbsp;- An open-source CRF Reference String Parsing Package</li>
<li><a href="https://github.com/c9s/App-gh">c9s/App-gh</a>&nbsp;- GitHub Command-line Utility.</li>
<li><a href="https://github.com/bradfitz/shipit">bradfitz/shipit</a>&nbsp;- Software Release Tool</li>
<li><a href="https://github.com/sukria/WebKeePass">sukria/WebKeePass</a>&nbsp;- Web interface over a KeePass database</li>
<li><a href="https://github.com/naturalist/kelp">naturalist/kelp</a>&nbsp;- A web framework light, yet rich in nutrients.</li>
<li><a href="https://github.com/kirei/catt">kirei/catt</a>&nbsp;- Certification Authority Trust Tracker</li>
<li><a href="https://github.com/kazuho/Starlet">kazuho/Starlet</a>&nbsp;- a Plack Server, formerly known as Plack::Server::Standalone::Prefork::Server::Starter</li>
<li><a href="https://github.com/dolmen/github-keygen">dolmen/github-keygen</a>&nbsp;- Easy creation of secure SSH configuration for your Github account(s)</li>
<li><a href="https://github.com/bigplum/nginx-tcp-lua-module">bigplum/nginx-tcp-lua-module</a>&nbsp;- A TCP server with lua supporting based on nginx</li>
<li><a href="https://github.com/baohaojun/ajoke">baohaojun/ajoke</a>&nbsp;- Abducting Java Onto Emacs, K is silent.</li>
<li><a href="https://github.com/apache/spamassassin">apache/spamassassin</a>&nbsp;- Read-only mirror of Apache SpamAssassin. Submit patches to&nbsp;<a href="https://bz.apache.org/SpamAssassin/">https://bz.apache.org/SpamAssassin/</a>. Do not send pull requests</li>
<li><a href="https://github.com/tsee/Games-Lacuna-Client">tsee/Games-Lacuna-Client</a>&nbsp;- A client for the Lacuna Expanse</li>
<li><a href="https://github.com/sitaramc/gitpod">sitaramc/gitpod</a>&nbsp;- local caching server for git when the actual server is on the other side of a (possibly slow) WAN link</li>
<li><a href="https://github.com/mjdominus/git-util">mjdominus/git-util</a>&nbsp;- Miscellaneous git scripts and utilities</li>
<li><a href="https://github.com/kevina/wordlist">kevina/wordlist</a>&nbsp;- SCOWL (and friends).</li>
<li><a href="https://github.com/franckcuny/jitterbug">franckcuny/jitterbug</a>&nbsp;- Cross Language Continuous Integration for Git</li>
<li><a href="https://github.com/fastmail/towncrier">fastmail/towncrier</a>&nbsp;- A status dashboard</li>
<li><a href="https://github.com/collectiveintel/cif-v1">collectiveintel/cif-v1</a>&nbsp;- the fastest way to consume threat intelligence.</li>
<li><a href="https://github.com/anestisb/WeBaCoo">anestisb/WeBaCoo</a>&nbsp;- Web Backdoor Cookie Script-Kit</li>
<li><a href="https://github.com/Tarrasch/zsh-autoenv">Tarrasch/zsh-autoenv</a>&nbsp;- Autoenv for zsh</li>
<li><a href="https://github.com/xme/hoover">xme/hoover</a>&nbsp;- Wireless Probe Requests Sniffer</li>
<li><a href="https://github.com/spencertipping/caterwaul">spencertipping/caterwaul</a>&nbsp;- A Javascript-to-Javascript compiler</li>
<li><a href="https://github.com/openresty/lua-redis-parser">openresty/lua-redis-parser</a>&nbsp;- Lua module for parsing raw redis responses</li>
<li><a href="https://github.com/mpeters/smolder">mpeters/smolder</a>&nbsp;- Web-based Continuous Integration Smoke Server</li>
<li><a href="https://github.com/madscientist/msjnc">madscientist/msjnc</a>&nbsp;- MadScientist Juniper Network Connect Session Manager</li>
<li><a href="https://github.com/kfdm/irssi-growl">kfdm/irssi-growl</a>&nbsp;- Growl notification script for irssi</li>
<li><a href="https://github.com/jimsalterjrs/sanoid">jimsalterjrs/sanoid</a>&nbsp;- Policy-driven snapshot management and replication tools. Currently using ZFS for underlying next-gen storage, with explicit plans to support btrfs when btrfs becomes more reliable. Primarily intended for Linux, but BSD use is supported and reasonably frequently tested.</li>
<li><a href="https://github.com/duritong/puppet-nagios">duritong/puppet-nagios</a>&nbsp;- a nagios module for puppet</li>
<li><a href="https://github.com/szabgab/screencasts">szabgab/screencasts</a>&nbsp;- The translated captions of my screencasts</li>
<li><a href="https://github.com/openresty/resty-cli">openresty/resty-cli</a>&nbsp;- Fancy command-line utilities for OpenResty</li>
<li><a href="https://github.com/kre/Kinetic-Rules-Engine">kre/Kinetic-Rules-Engine</a>&nbsp;- Source code for KRE</li>
<li><a href="https://github.com/helloandre/cr48">helloandre/cr48</a>&nbsp;- my programs that i've put on cr48</li>
<li><a href="https://github.com/csirtgadgets/massive-octo-spice">csirtgadgets/massive-octo-spice</a>&nbsp;- the fastest way to consume threat intelligence</li>
<li><a href="https://github.com/agentzh/sshbatch">agentzh/sshbatch</a>&nbsp;- SSH::Batch for cluster operations</li>
<li><a href="https://github.com/SPORE/api-description">SPORE/api-description</a>&nbsp;- SPORE description for API</li>
<li><a href="https://github.com/xilinus/prototypeui">xilinus/prototypeui</a>&nbsp;- Prototype UI</li>
<li><a href="https://github.com/tagomoris/isucon">tagomoris/isucon</a>&nbsp;- isucon web applications and tools</li>
<li><a href="https://github.com/perl6/doc">perl6/doc</a>&nbsp;- Perl 6 documentation (tools and docs)</li>
<li><a href="https://github.com/hirose31/redis-traffic-stats">hirose31/redis-traffic-stats</a>&nbsp;- Redis query analyzer for counting, traffic stats by command</li>
<li><a href="https://github.com/gjreda/pydata2014nyc">gjreda/pydata2014nyc</a>&nbsp;- Materials for my pandas tutorial at PyData 2014, NYC</li>
<li><a href="https://github.com/genaev/vmd">genaev/vmd</a>&nbsp;- vkontakte music downloader</li>
<li><a href="https://github.com/dalibo/sqlserver2pgsql">dalibo/sqlserver2pgsql</a>&nbsp;- Migration tool to convert a Microsoft SQL Server Database into a PostgreSQL database, as automatically as possible</li>
<li><a href="https://github.com/symkat/Stalker">symkat/Stalker</a>&nbsp;- Records and correlates nick!user@host information</li>
<li><a href="https://github.com/lvc/japi-compliance-checker">lvc/japi-compliance-checker</a>&nbsp;- A tool for checking backward API/ABI compatibility of a Java library</li>
<li><a href="https://github.com/justinabrahms/jlilly-bashy-dotfiles">justinabrahms/jlilly-bashy-dotfiles</a>&nbsp;- This is a collection of my dotfiles not related to either vim or emacs. Mostly just bashy stuff.</li>
<li><a href="https://github.com/interchange/interchange">interchange/interchange</a>&nbsp;- Interchange</li>
<li><a href="https://github.com/ingydotnet/jemplate">ingydotnet/jemplate</a>&nbsp;- Industrial strength JavaScript template framework</li>
<li><a href="https://github.com/depesz/explain.depesz.com">depesz/explain.depesz.com</a>&nbsp;- Webpage for showing easier to read version of PostgreSQL explains</li>
<li><a href="https://github.com/Webconverger/webc">Webconverger/webc</a>&nbsp;- Webconverger's curated chroot from which updates originate</li>
<li><a href="https://github.com/SSLMate/sslmate">SSLMate/sslmate</a>&nbsp;- The SSLMate Client - Buy and Manage SSL Certs from the Command Line</li>
<li><a href="https://github.com/stayradiated/dotfiles">stayradiated/dotfiles</a>&nbsp;- Just my configs for CRUX and OS X</li>
<li><a href="https://github.com/openresty/lua-resty-lock">openresty/lua-resty-lock</a>&nbsp;- Simple nonblocking lock API for ngx_lua based on shared memory dictionaries</li>
<li><a href="https://github.com/nickspacek/Net-Google-Tasks">nickspacek/Net-Google-Tasks</a>&nbsp;- Interface to Google Tasks</li>
<li><a href="https://github.com/jdavis/dotfiles">jdavis/dotfiles</a>&nbsp;- Config files for various things</li>
<li><a href="https://github.com/evadne/LESS.mode">evadne/LESS.mode</a>&nbsp;- LESS syntax mode for SubEthaEdit and Coda</li>
<li><a href="https://github.com/dotse/zonemaster">dotse/zonemaster</a>&nbsp;- The Zonemaster Project</li>
<li><a href="https://github.com/darold/squidanalyzer">darold/squidanalyzer</a>&nbsp;- Squid Analyzer parses Squid proxy access log and reports general statistics about hits, bytes, users, networks, top URLs, and top second level domains. Statistic reports are oriented toward user and bandwidth control.</li>
<li><a href="https://github.com/vti/showmetheshell">vti/showmetheshell</a>&nbsp;- HTML5 WebSocket Shell</li>
<li><a href="https://github.com/oalders/http-browserdetect">oalders/http-browserdetect</a>&nbsp;- Determine the Web browser, version, and platform from an HTTP user agent string</li>
<li><a href="https://github.com/marksteele/collectd-plugins">marksteele/collectd-plugins</a>&nbsp;- Collectd Plugins</li>
<li><a href="https://github.com/kristofg/rifec">kristofg/rifec</a>&nbsp;- Receive Images From Eye-Fi Cards</li>
<li><a href="https://github.com/kirei/fpdns">kirei/fpdns</a>&nbsp;- Net::DNS::Fingerprint</li>
<li><a href="https://github.com/gjospin/PhyloSift">gjospin/PhyloSift</a>&nbsp;- Phylogenetic and taxonomic analysis for genomes and metagenomes</li>
<li><a href="https://github.com/chrispix/symbolicatecrash-fix">chrispix/symbolicatecrash-fix</a>&nbsp;- A patch of Apple's symbolicatecrash script, broken in XCode4</li>
<li><a href="https://github.com/billkarwin/bk-tools">billkarwin/bk-tools</a>&nbsp;- Scripts I wrote to help using MySQL and Percona products.</li>
<li><a href="https://github.com/adelton/docker-freeipa">adelton/docker-freeipa</a>&nbsp;- FreeIPA server and client in Docker containers; see hub.docker.com for the images:</li>
<li><a href="https://github.com/OWASP/O-Saft">OWASP/O-Saft</a>&nbsp;- O-Saft - OWASP SSL audit for testers</li>
<li><a href="https://github.com/yllan/moedict-mac">yllan/moedict-mac</a>&nbsp;- 轉換教育部國語辭典為 Mac 內建字典</li>
<li><a href="https://github.com/tokuhirom/cpan-outdated">tokuhirom/cpan-outdated</a>&nbsp;- detect outdated CPAN modules</li>
<li><a href="https://github.com/openwebwork/webwork2">openwebwork/webwork2</a>&nbsp;- Course management front end for WeBWorK</li>
<li><a href="https://github.com/nicolaspanel/libsvm.net">nicolaspanel/libsvm.net</a>&nbsp;- An easy way to use Support Vector Machines in your .NET projects (c# code)</li>
<li><a href="https://github.com/jodrell/unbound-block-hosts">jodrell/unbound-block-hosts</a>&nbsp;- a script to convert Dan Pollock's ad blocking hosts file into Unbound local-data.</li>
<li><a href="https://github.com/davepacheco/jsstyle">davepacheco/jsstyle</a>&nbsp;- cstyle-based JavaScript style checker</li>
<li><a href="https://github.com/cloudflare/lua-resty-cookie">cloudflare/lua-resty-cookie</a>&nbsp;- Lua library for HTTP cookie manipulations for OpenResty/ngx_lua</li>
<li><a href="https://github.com/c9s/github-taiwan">c9s/github-taiwan</a>&nbsp;- Taiwan Developers on Github</li>
<li><a href="https://github.com/PadreIDE/Padre">PadreIDE/Padre</a>&nbsp;- Offical repository of the core Padre code</li>
<li><a href="https://github.com/rovo89/XposedTools">rovo89/XposedTools</a>&nbsp;- These tools can be used to compile and package the Xposed framework.</li>
<li><a href="https://github.com/openresty/nginx-devel-utils">openresty/nginx-devel-utils</a>&nbsp;- Utilities for nginx module development</li>
<li><a href="https://github.com/openSUSE/obs-build">openSUSE/obs-build</a>&nbsp;- OBS build script, can be used with OBS or stand alone</li>
<li><a href="https://github.com/nichtich/ditaa-markdown">nichtich/ditaa-markdown</a>&nbsp;- process ditaa diagrams embedded in pandoc markdown</li>
<li><a href="https://github.com/bestpractical/prophet">bestpractical/prophet</a>&nbsp;- A disconnected, replicated p2p database -- upstream is now&nbsp;<a href="http://gitorious.org/prophet">http://gitorious.org/prophet</a></li>
<li><a href="https://github.com/aparks517/convert-websters">aparks517/convert-websters</a>&nbsp;- Convert Webster's Unabridged Dictionary from Project Gutenberg to OSX dictionary</li>
<li><a href="https://github.com/ap/titlecase">ap/titlecase</a>&nbsp;- An attempt to refactor John Gruber&rsquo;s Title Case program</li>
<li><a href="https://github.com/yko/mojo.vim">yko/mojo.vim</a>&nbsp;- Vim syntax for mojo epl templates in Mojo projects</li>
<li><a href="https://github.com/tseemann/prokka">tseemann/prokka</a>&nbsp;- Rapid prokaryotic genome annotation</li>
<li><a href="https://github.com/peterkeen/calorific">peterkeen/calorific</a>&nbsp;- Command-line nutrient tracking tool</li>
<li><a href="https://github.com/openresty/lua-resty-dns">openresty/lua-resty-dns</a>&nbsp;- DNS resolver for the nginx lua module</li>
<li><a href="https://github.com/maxmind/MaxMind-DB">maxmind/MaxMind-DB</a>&nbsp;- Spec and test data for the MaxMind DB file format</li>
<li><a href="https://github.com/kazeburo/Kurado">kazeburo/Kurado</a>&nbsp;- monitor metrics</li>
<li><a href="https://github.com/bigpresh/Dancer-Plugin-Database">bigpresh/Dancer-Plugin-Database</a>&nbsp;- Dancer::Plugin::Database - easy database support for Dancer applications</li>
<li><a href="https://github.com/BaldMansMojo/check_vmware_esx">BaldMansMojo/check_vmware_esx</a>&nbsp;- chech_vmware_esx Fork of check_vmware_api.pl</li>
<li><a href="https://github.com/vanstyn/RapidApp">vanstyn/RapidApp</a>&nbsp;- Turnkey ajaxy webapps</li>
<li><a href="https://github.com/taylorchu/baker">taylorchu/baker</a>&nbsp;- The bash static site generator with real template engine</li>
<li><a href="https://github.com/sujaikumar/assemblage">sujaikumar/assemblage</a>&nbsp;- Tools for working with second gen assemblies, fasta sequences, etc</li>
<li><a href="https://github.com/obfuscurity/nagios-scripts">obfuscurity/nagios-scripts</a>&nbsp;- Custom scripts written for Nagios</li>
<li><a href="https://github.com/miyagawa/AnyEvent-Twitter-Stream">miyagawa/AnyEvent-Twitter-Stream</a>&nbsp;- AnyEvent based Twitter stream consumer</li>
<li><a href="https://github.com/miyagawa/AnyEvent-Redis">miyagawa/AnyEvent-Redis</a>&nbsp;- Asynchronous Redis client</li>
<li><a href="https://github.com/drdrang/tp-planner">drdrang/tp-planner</a>&nbsp;- A set of scripts for printing TaskPaper documents compactly for inserting into a "Junior" sized planner.</li>
<li><a href="https://github.com/ccurtsinger/stabilizer">ccurtsinger/stabilizer</a>&nbsp;- Stabilizer: Rigorous Performance Evaluation</li>
<li><a href="https://github.com/zrlram/afterglow">zrlram/afterglow</a>&nbsp;- graph visualization tool</li>
<li><a href="https://github.com/utcompling/OpenNLP-Models">utcompling/OpenNLP-Models</a>&nbsp;- A project for code to create models from existing corpora and distribute models.</li>
<li><a href="https://github.com/theory/dbix-connector">theory/dbix-connector</a>&nbsp;- Fast, safe DBI connection management</li>
<li><a href="https://github.com/redondos/mutt">redondos/mutt</a>&nbsp;- mutt configuration</li>
<li><a href="https://github.com/p5-app-adventcalendar/p5-app-adventcalendar">p5-app-adventcalendar/p5-app-adventcalendar</a>&nbsp;- let's make advent calendar!</li>
<li><a href="https://github.com/motemen/Teto">motemen/Teto</a>&nbsp;- nicovideo stream player</li>
<li><a href="https://github.com/lifeforms/irssi-smartfilter">lifeforms/irssi-smartfilter</a>&nbsp;- Irssi JOIN/QUIT smart filter for busy channels</li>
<li><a href="https://github.com/genehack/app-gitgot">genehack/app-gitgot</a>&nbsp;- A tool to make it easier to manage multiple code repositories using different VCSen</li>
<li><a href="https://github.com/ytoolshed/multipkg">ytoolshed/multipkg</a>&nbsp;- Automation for package builds</li>
<li><a href="https://github.com/willemk/varnish-mobiletranslate">willemk/varnish-mobiletranslate</a>&nbsp;- Tool to translate the latest mobile detect script into varnish</li>
<li><a href="https://github.com/sashahilton00/spotify-connect-resources">sashahilton00/spotify-connect-resources</a>&nbsp;- A repository to hold any data/stuff related to reversing the Spotify Connect protocol. Mostly just data dumps at the moment, but if you have something to add to it, be it an implementation, information or just another data dump, make a PR and I will add it asap.</li>
<li><a href="https://github.com/kumina/nagios-plugins-kumina">kumina/nagios-plugins-kumina</a>&nbsp;- A collection of Nagios plugins that we package.</li>
<li><a href="https://github.com/jbergantine/django-template.mode">jbergantine/django-template.mode</a>&nbsp;- Django Template Syntax mode for Panic Coda 2</li>
<li><a href="https://github.com/jasta/android-dev-tools">jasta/android-dev-tools</a>&nbsp;- Collection of developer tools for working with Android.</li>
<li><a href="https://github.com/devel/PowerDNS-API">devel/PowerDNS-API</a>&nbsp;- HTTP API for the PowerDNS Database</li>
<li><a href="https://github.com/daniel-nichter/hackmysql.com">daniel-nichter/hackmysql.com</a>&nbsp;- Deprecated tools from HackMySQL.com</li>
<li><a href="https://github.com/agentzh/cheater">agentzh/cheater</a>&nbsp;- A tool and a language that help generating random complex database instance based on predefined rules</li>
<li><a href="https://github.com/GMOD/GBrowse">GMOD/GBrowse</a>&nbsp;- the Generic Genome Browser</li>
<li><a href="https://github.com/yaoweibin/nginx_limit_access_module">yaoweibin/nginx_limit_access_module</a>&nbsp;- support to deny specific variable with HTTP POST interface</li>
<li><a href="https://github.com/yanick/git-cpan-patch">yanick/git-cpan-patch</a>&nbsp;- System to write patches against CPAN modules via Git</li>
<li><a href="https://github.com/synacorinc/dtk">synacorinc/dtk</a>&nbsp;- DTK (data toolkit) is a suite of tools for parsing, analyzing, and graphing logs and other datasets.</li>
<li><a href="https://github.com/schweikert/postgrey">schweikert/postgrey</a>&nbsp;- Postfix Greylisting Policy-Daemon</li>
<li><a href="https://github.com/noodba/myawr">noodba/myawr</a>&nbsp;- awr of MySQL</li>
<li><a href="https://github.com/marcusramberg/Mojolicious-Plugin-OAuth2">marcusramberg/Mojolicious-Plugin-OAuth2</a>&nbsp;- OAuth support for Mojolicious</li>
<li><a href="https://github.com/lukeredpath/LRMocky">lukeredpath/LRMocky</a>&nbsp;- A port of jMock 2.0 for Objective-C</li>
<li><a href="https://github.com/linux-test-project/lcov">linux-test-project/lcov</a>&nbsp;- LCOV</li>
<li><a href="https://github.com/gamelinux/echidna">gamelinux/echidna</a>&nbsp;- Network Security Monitoring Framework</li>
<li><a href="https://github.com/datameet/india-election-data">datameet/india-election-data</a>&nbsp;- To map publicly available datasets related to General Assembly (Lok Sabha) elections in India.</li>
<li><a href="https://github.com/cmatsuoka/figlet-fonts">cmatsuoka/figlet-fonts</a>&nbsp;- A collection of fonts for FIGlet</li>
<li><a href="https://github.com/ambs/Books">ambs/Books</a>&nbsp;- My repository to book projects... if I eventually have the guts to write more than one...</li>
<li><a href="https://github.com/abw/Template-TT3">abw/Template-TT3</a>&nbsp;- A working prototype of the TT3 template language</li>
<li><a href="https://github.com/yasuaki/git-doc-ja">yasuaki/git-doc-ja</a>&nbsp;- Japanese translation of git/Documentation/</li>
<li><a href="https://github.com/xdata-skylark/libskylark">xdata-skylark/libskylark</a>&nbsp;- Sketching-based Distributed Matrix Computations for Machine Learning</li>
<li><a href="https://github.com/typester/nim">typester/nim</a>&nbsp;- minimal command-line based contents generator</li>
<li><a href="https://github.com/trapd00r/utils">trapd00r/utils</a>&nbsp;- Small useful utilities for everyday work</li>
<li><a href="https://github.com/plack/Plack-Middleware-Session">plack/Plack-Middleware-Session</a>&nbsp;- A very minimalist session library for Plack</li>
<li><a href="https://github.com/openxpki/openxpki">openxpki/openxpki</a>&nbsp;- OpenXPKI Code</li>
<li><a href="https://github.com/onishi/mysqldiff">onishi/mysqldiff</a>&nbsp;- mysqldiff - mysql scheme diff</li>
<li><a href="https://github.com/mikegrb/App-otfile">mikegrb/App-otfile</a>&nbsp;- Serve a single file, once, via HTTP over the local network.</li>
<li><a href="https://github.com/mikebrittain/Wesley">mikebrittain/Wesley</a>&nbsp;- Compress and optimize the JPEG, PNG, and GIF files used in your site&rsquo;s HTML and CSS.</li>
<li><a href="https://github.com/kthakore/frozen-bubble">kthakore/frozen-bubble</a>&nbsp;- Making frozen bubble cross platform</li>
<li><a href="https://github.com/hluk/vimColorsToQtCreator">hluk/vimColorsToQtCreator</a>&nbsp;- Convert vim color schemes so they can be used in Qt Creator.</li>
<li><a href="https://github.com/cvicente/Netdot">cvicente/Netdot</a>&nbsp;- Network Documentation Tool</li>
<li><a href="https://github.com/ciembor/TerminalHero">ciembor/TerminalHero</a>&nbsp;- Linux society's response to Guitar Hero. :)</li>
<li><a href="https://github.com/carloslima/dhsnapshot">carloslima/dhsnapshot</a>&nbsp;- RSnapshot-like backups to DreamHost Backup Service</li>
<li><a href="https://github.com/alecchen/doxygen-lua">alecchen/doxygen-lua</a>&nbsp;- Make Doxygen support Lua</li>
<li><a href="https://github.com/AgileBits/onepassword-utilities">AgileBits/onepassword-utilities</a>&nbsp;- Utilities for 1Password</li>
<li><a href="https://github.com/yrmt/dotfiles">yrmt/dotfiles</a>&nbsp;- a few of yrmt (beastie)'s dotfiles</li>
<li><a href="https://github.com/willixix/WL-NagiosPlugins">willixix/WL-NagiosPlugins</a>&nbsp;- Clone of naglio-plugins repository for those using old name</li>
<li><a href="https://github.com/rafl/moosex-method-signatures">rafl/moosex-method-signatures</a>&nbsp;- Method declarations with type constraints and no source filter</li>
<li><a href="https://github.com/proftpd/proftpd">proftpd/proftpd</a>&nbsp;- ProFTPD source code</li>
<li><a href="https://github.com/plainblack/Wing">plainblack/Wing</a>&nbsp;- Next generation web services toolkit.</li>
<li><a href="https://github.com/msimerson/NicTool">msimerson/NicTool</a>&nbsp;- NicTool: a DNS management solution</li>
<li><a href="https://github.com/j0hnnMcCock/fuckNSA">j0hnnMcCock/fuckNSA</a>&nbsp;- fuckNSA</li>
<li><a href="https://github.com/dbsrgits/sql-translator">dbsrgits/sql-translator</a>&nbsp;- SQL::Translator (SQLFairy)</li>
<li><a href="https://github.com/cryptax/dextools">cryptax/dextools</a>&nbsp;- Miscellaenous DEX (Dalvik Executable) tools</li>
<li><a href="https://github.com/cosimo/varnish-accept-language">cosimo/varnish-accept-language</a>&nbsp;- An experimental VCL extension to squash client Accept-Language headers</li>
<li><a href="https://github.com/catap/nginx-catap">catap/nginx-catap</a>&nbsp;- catap's nginx repository</li>
<li><a href="https://github.com/ConSol/omd">ConSol/omd</a>&nbsp;- OMD - Open Monitoring Distribution Labs Edition</li>
<li><a href="https://github.com/42Lines/cq5tools">42Lines/cq5tools</a>&nbsp;- Handy CLI tools for working with Adobe's CQ5 CMS product</li>
<li><a href="https://github.com/thomasfrivold/SilentBob">thomasfrivold/SilentBob</a>&nbsp;- SilentBob Firewall</li>
<li><a href="https://github.com/starlilyth/Linux-PoolManager">starlilyth/Linux-PoolManager</a>&nbsp;- Web based miner manager for CGMiner and clones (SGMiner, Keccak, etc) on Linux (PIMP/BAMT/SMOS, Debian, RedHat/Centos).</li>
<li><a href="https://github.com/perl-pod/pod-simple">perl-pod/pod-simple</a>&nbsp;- Framework for Parsing and Formatting POD</li>
<li><a href="https://github.com/openresty/opsboy">openresty/opsboy</a>&nbsp;- A rule-based sysadmin tool that helps setting up complex environment for blank machines</li>
<li><a href="https://github.com/nekokak/qudo">nekokak/qudo</a>&nbsp;- job queue system</li>
<li><a href="https://github.com/moshen/Image-Term256Color">moshen/Image-Term256Color</a>&nbsp;- Display images in your 256 color terminal! (kinda) - superseded by&nbsp;<a href="https://github.com/moshen/gotermimg">https://github.com/moshen/gotermimg</a></li>
<li><a href="https://github.com/kazuho/cppref">kazuho/cppref</a>&nbsp;- man-style access to cppreference.com documents</li>
<li><a href="https://github.com/jquelin/dist-zilla-plugin-git">jquelin/dist-zilla-plugin-git</a>&nbsp;- dist::zilla plugin to update your git repository after release</li>
<li><a href="https://github.com/jonlives/nagios-jenkins-plugin">jonlives/nagios-jenkins-plugin</a>&nbsp;- A nagios plugin for which lets you check jenkins jobs according to various criteria.</li>
<li><a href="https://github.com/ikebe/Pickles">ikebe/Pickles</a>&nbsp;- Tiny Web Application Framework.</li>
<li><a href="https://github.com/gws/munin-plugin-couchdb">gws/munin-plugin-couchdb</a>&nbsp;- Munin plugins for graphing CouchDB statistics.</li>
<li><a href="https://github.com/dyne/gitzone">dyne/gitzone</a>&nbsp;- git-based zone management tool for static and dynamic domains</li>
<li><a href="https://github.com/duggan/shlint">duggan/shlint</a>&nbsp;- A shell linting utility.</li>
<li><a href="https://github.com/bloonix/logstash-delete-index">bloonix/logstash-delete-index</a>&nbsp;- A script to delete Elasticsearch indices of Logstash</li>
<li><a href="https://github.com/angavrilov/df-structures">angavrilov/df-structures</a>&nbsp;- Dwarf Fortress data structure descriptions</li>
<li><a href="https://github.com/alibaba/tengine-website">alibaba/tengine-website</a>&nbsp;- The source code of Tengine's website (tengine.taobao.org)</li>
<li><a href="https://github.com/SpiderLabs/thicknet">SpiderLabs/thicknet</a>&nbsp;- TCP session interception and injection framework</li>
<li><a href="https://github.com/AssetTracker/rt-extension-assettracker">AssetTracker/rt-extension-assettracker</a>&nbsp;- Asset Tracker is an extension for Request Tracker. It integrates asset tracking with your favorite ticketing system.</li>
<li><a href="https://github.com/tokuhirom/Daiku">tokuhirom/Daiku</a>&nbsp;- Yet another build tool on Perl5</li>
<li><a href="https://github.com/schweikert/mailgraph">schweikert/mailgraph</a>&nbsp;- Mail plotting script</li>
<li><a href="https://github.com/plainblack/Lacuna-Server-Open">plainblack/Lacuna-Server-Open</a>&nbsp;- The open source Lacuna Server repository.</li>
<li><a href="https://github.com/netoptimizer/IPTV-Analyzer">netoptimizer/IPTV-Analyzer</a>&nbsp;- Fast MPEG2 Transport Stream Analyzer, based on Netfilter kernel module</li>
<li><a href="https://github.com/kvorg/mojo-handbook">kvorg/mojo-handbook</a>&nbsp;- Mojolicious Handbook: a temporary documentation resource for Mojolicious</li>
<li><a href="https://github.com/kablamo/VimDebug">kablamo/VimDebug</a>&nbsp;- Integrate your debugger with Vim. Currently supports Perl, Python, and Ruby. This code is very much in beta.</li>
<li><a href="https://github.com/genome/gms">genome/gms</a>&nbsp;- The Genome Modeling System installer (BETA).</li>
<li><a href="https://github.com/franckcuny/presque">franckcuny/presque</a>&nbsp;- a simple redis/tatsumaki message queue</li>
<li><a href="https://github.com/dgl/cgiirc">dgl/cgiirc</a>&nbsp;- CGI:IRC web based IRC client</li>
<li><a href="https://github.com/dann/angelos">dann/angelos</a>&nbsp;- yet another web application framework</li>
<li><a href="https://github.com/Bibzball/Git-Mediawiki">Bibzball/Git-Mediawiki</a>&nbsp;- Gate between git and mediawiki</li>
<li><a href="https://github.com/trustly/pci-blackbox">trustly/pci-blackbox</a>&nbsp;- PCI-DSS compliant card system built on PostgreSQL and PL/pgSQL</li>
<li><a href="https://github.com/tomill/Template-Semantic">tomill/Template-Semantic</a>&nbsp;- Use pure XHTML/XML as a template</li>
<li><a href="https://github.com/raboof/realtimeconfigquickscan">raboof/realtimeconfigquickscan</a>&nbsp;- Linux configuration checker for systems to be used for real-time audio</li>
<li><a href="https://github.com/postcasio/coda2-modes">postcasio/coda2-modes</a>&nbsp;- Syntax modes for Coda 2.</li>
<li><a href="https://github.com/norm/homedir">norm/homedir</a>&nbsp;- Public home directory files</li>
<li><a href="https://github.com/nindwen/config">nindwen/config</a>&nbsp;- Arch Linux config-files</li>
<li><a href="https://github.com/lvc/pkgdiff">lvc/pkgdiff</a>&nbsp;- A tool for visualizing changes in Linux software packages</li>
<li><a href="https://github.com/jjn1056/DBIx-Class-Migration">jjn1056/DBIx-Class-Migration</a>&nbsp;- Use DBIC::DeploymentHandler and DBIC::Fixtures together for a sane database versioning workflow</li>
<li><a href="https://github.com/hpcugent/easybuild-easyconfigs">hpcugent/easybuild-easyconfigs</a>&nbsp;- A collection of easyconfig files that describe which software to build using which build options with EasyBuild.</li>
<li><a href="https://github.com/gfx/p5-Data-Validator">gfx/p5-Data-Validator</a>&nbsp;- Type constraints based data validator for Perl5</li>
<li><a href="https://github.com/evalEmpire/method-signatures">evalEmpire/method-signatures</a>&nbsp;- Method and function declarations with signatures, no source filter</li>
<li><a href="https://github.com/yogan/cope">yogan/cope</a>&nbsp;- A colourful wrapper for terminal programs</li>
<li><a href="https://github.com/trinityrnaseq/trinityrnaseq">trinityrnaseq/trinityrnaseq</a>&nbsp;- Trinity RNA-Seq de novo transcriptome assembly</li>
<li><a href="https://github.com/tokuhirom/p5-router-simple">tokuhirom/p5-router-simple</a>&nbsp;- simple http router</li>
<li><a href="https://github.com/thiagorondon/OpenData-BR">thiagorondon/OpenData-BR</a>&nbsp;- OpenData-BR</li>
<li><a href="https://github.com/skx/slaughter">skx/slaughter</a>&nbsp;- The Slaughter system-administration &amp; configuration tool.</li>
<li><a href="https://github.com/mizzy/webiblo">mizzy/webiblo</a>&nbsp;- Web to ebook project</li>
<li><a href="https://github.com/miyagawa/Dist-Milla">miyagawa/Dist-Milla</a>&nbsp;- Opinionated and Unobtrusive distribution builder</li>
<li><a href="https://github.com/meermanr/TVSeriesRenamer">meermanr/TVSeriesRenamer</a>&nbsp;- Script for renaming files in a digital video collection. Automatically fetches episode titles from the web.</li>
<li><a href="https://github.com/markround/Cacti-iostat-templates">markround/Cacti-iostat-templates</a>&nbsp;- A set of templates to monitor iostat statistics on Unix systems</li>
<li><a href="https://github.com/gvalkov/gitolite-sshkey-form">gvalkov/gitolite-sshkey-form</a>&nbsp;- A web app for submitting ssh public keys directly to gitolite</li>
<li><a href="https://github.com/ftilmann/latexdiff">ftilmann/latexdiff</a>&nbsp;- Compares two latex files and marks up significant differences between them. Releases on&nbsp;<a href="http://www.ctan.org/">www.ctan.org</a>&nbsp;and mirrors</li>
<li><a href="https://github.com/eprints/eprints">eprints/eprints</a>&nbsp;- EPrints Core</li>
<li><a href="https://github.com/eksopl/fuuka">eksopl/fuuka</a>&nbsp;- Fuuka Imageboard Archiver</li>
<li><a href="https://github.com/aelse/dot-ssh-config">aelse/dot-ssh-config</a>&nbsp;- Generate SSH client configurations with support for tunnels</li>
<li><a href="https://github.com/Perl5-Alien/Alien-Base">Perl5-Alien/Alien-Base</a>&nbsp;- Base classes for Alien:: modules</li>
<li><a href="https://github.com/Ovid/example-test-training-material">Ovid/example-test-training-material</a>&nbsp;- Sample Code From Ovid's Introductory Testing Course</li>
<li><a href="https://github.com/LuRsT/vspark">LuRsT/vspark</a>&nbsp;- Like spark, but vertical</li>
<li><a href="https://github.com/DjebbZ/Drupal-PHPStorm-Live-Templates">DjebbZ/Drupal-PHPStorm-Live-Templates</a>&nbsp;- PHPSTorm Live Templates (aka code snippets) for Drupal 7</li>
<li><a href="https://github.com/zamiron/ru4sphinx">zamiron/ru4sphinx</a>&nbsp;- Creating Russian voice model for cmu-sphinx</li>
<li><a href="https://github.com/yappo/p5-Data-Model">yappo/p5-Data-Model</a>&nbsp;- Data::Model is Data/Object Mapper and Model Manager.</li>
<li><a href="https://github.com/xaicron/p5-www-youtube-download">xaicron/p5-www-youtube-download</a>&nbsp;- YouTube video download interface.</li>
<li><a href="https://github.com/vti/protocol-websocket">vti/protocol-websocket</a>&nbsp;- Protocol::WebSocket</li>
<li><a href="https://github.com/ukigumo/Ukigumo-Server">ukigumo/Ukigumo-Server</a>&nbsp;- This is a ukigumo server application.</li>
<li><a href="https://github.com/treasonx/environment">treasonx/environment</a>&nbsp;- Personal Environment Files (vim, bash, etc)</li>
<li><a href="https://github.com/sartak/app-nopaste">sartak/app-nopaste</a>&nbsp;- easy access to any pastebin</li>
<li><a href="https://github.com/rolandwalker/emacs-travis">rolandwalker/emacs-travis</a>&nbsp;- Travis CI recipe for Emacs libraries.</li>
<li><a href="https://github.com/msimerson/sentry">msimerson/sentry</a>&nbsp;- Bruteforce attack blocker (ssh, FTP, SMTP, and more)</li>
<li><a href="https://github.com/lookout/ngx_borderpatrol">lookout/ngx_borderpatrol</a>&nbsp;- Edge-authentication</li>
<li><a href="https://github.com/ipfire/ipfire-2.x">ipfire/ipfire-2.x</a>&nbsp;- IPFire 2.x development tree</li>
<li><a href="https://github.com/dgl/cpangrep">dgl/cpangrep</a>&nbsp;- Search code on CPAN with Regexps</li>
<li><a href="https://github.com/bugzilla/bugzilla">bugzilla/bugzilla</a>&nbsp;- Read-only mirror of Bugzilla source from git.mozilla.org/bugzilla/bugzilla.git. Tests at&nbsp;<a href="https://travis-ci.org/bugzilla/bugzilla">https://travis-ci.org/bugzilla/bugzilla</a>&nbsp;&ndash;</li>
<li><a href="https://github.com/avar/irssi-bitlbee-facebook-rename">avar/irssi-bitlbee-facebook-rename</a>&nbsp;- A irssi script to rename chat.facebook.com nicks in bitlbee from e.g. "u1359078110" to "AEvarArnfjord"</li>
<li><a href="https://github.com/artm/qtcreator-solarized-syntax">artm/qtcreator-solarized-syntax</a>&nbsp;- Solarized style for Qt Creator's syntax highlighter</li>
<li><a href="https://github.com/SharkHunter/Channel">SharkHunter/Channel</a>&nbsp;- Channel Browse plugin for PMS</li>
<li><a href="https://github.com/OpenElectronicsLab/eeg-mouse">OpenElectronicsLab/eeg-mouse</a>&nbsp;- The eeg-mouse is a project to attempt to control a mouse with eeg signals.</li>
<li><a href="https://github.com/yusukebe/App-revealup">yusukebe/App-revealup</a>&nbsp;- HTTP Server app for viewing Markdown formatted text as slides</li>
<li><a href="https://github.com/yappo/JSTAPd">yappo/JSTAPd</a>&nbsp;- JSTAPd is Ajax application friendly Javascript Unit Test Server.</li>
<li><a href="https://github.com/wayfind/polite">wayfind/polite</a>&nbsp;- 一个为前端开发者量身打造的Vim配置和插件精选集</li>
<li><a href="https://github.com/smallfish/lua-resty-beanstalkd">smallfish/lua-resty-beanstalkd</a>&nbsp;- non-blocking beanstalkd client lib for ngx_lua</li>
<li><a href="https://github.com/sixteencolors/sixteencolors">sixteencolors/sixteencolors</a>&nbsp;- Sixteen Colors ANSI/ASCII Art Archive</li>
<li><a href="https://github.com/perigrin/moosex-poe">perigrin/moosex-poe</a>&nbsp;- The illicit love child of Moose and POE</li>
<li><a href="https://github.com/ole-tange/tangetools">ole-tange/tangetools</a>&nbsp;- Ole Tanges personal tools</li>
<li><a href="https://github.com/nothingmuch/class-mop">nothingmuch/class-mop</a>&nbsp;- Mirror of Class-MOP.git</li>
<li><a href="https://github.com/mjollnir/sf2debpkg">mjollnir/sf2debpkg</a>&nbsp;- Symfony2 Debian Packaging</li>
<li><a href="https://github.com/miyagawa/plack-dispatching-samples">miyagawa/plack-dispatching-samples</a>&nbsp;- Examples of Plack dispatcher using various CPAN modules</li>
<li><a href="https://github.com/miyagawa/Webhook-Growler">miyagawa/Webhook-Growler</a>&nbsp;- Receives Web hooks over Reverse HTTP and notifies via Growl</li>
<li><a href="https://github.com/miyagawa/HTTPx-Weblet">miyagawa/HTTPx-Weblet</a>&nbsp;- the Request/Response objects formerly known as the-old-Plack::Request</li>
<li><a href="https://github.com/miyagawa/Corona">miyagawa/Corona</a>&nbsp;- Coro based high-performance, asynchronous PSGI web server</li>
<li><a href="https://github.com/mengwong/org-asana">mengwong/org-asana</a>&nbsp;- Roundtrip synchronization and bidirectional replication between Emacs Org-mode and Asana.com.</li>
<li><a href="https://github.com/keydet89/Tools">keydet89/Tools</a>&nbsp;- Tools from WFA 4/e, timeline tools, etc.</li>
<li><a href="https://github.com/kan/moxy">kan/moxy</a>&nbsp;- Mobile web development proxy</li>
<li><a href="https://github.com/goccy/p5-Compiler-Tools-CopyPasteDetector">goccy/p5-Compiler-Tools-CopyPasteDetector</a>&nbsp;- detect Copy and Paste of Perl5 Codes</li>
<li><a href="https://github.com/ctcherry/easy_php_dev">ctcherry/easy_php_dev</a>&nbsp;- Collection of tools to quickly setup a dynamic PHP dev environment on OSX</li>
<li><a href="https://github.com/chromatic/CPAN-Dark">chromatic/CPAN-Dark</a>&nbsp;- Manage your own DarkPAN</li>
<li><a href="https://github.com/chansen/p5-http-tiny">chansen/p5-http-tiny</a>&nbsp;- Tiny HTTP Client</li>
<li><a href="https://github.com/bobtfish/catalystx-simplelogin">bobtfish/catalystx-simplelogin</a>&nbsp;- Simple login controller and template bundle for Catalyst</li>
<li><a href="https://github.com/bestpractical/git-sync">bestpractical/git-sync</a>&nbsp;- A tool to synchronize multiple git repositories</li>
<li><a href="https://github.com/Gilwyad/mailnesia.com">Gilwyad/mailnesia.com</a>&nbsp;- Anonymous Email in Seconds</li>
<li><a href="https://github.com/Ensembl/ensembl-rest">Ensembl/ensembl-rest</a>&nbsp;- Language agnostic RESTful data access to Ensembl data over HTTP</li>
<li><a href="https://github.com/CalculatedContent/tsvm">CalculatedContent/tsvm</a>&nbsp;- experiments testing transductive svm for my blog posts</li>
<li><a href="https://github.com/zby/WebNano">zby/WebNano</a>&nbsp;- A really minimalistic web framework.</li>
<li><a href="https://github.com/wtsi-hgi/docker-proxify">wtsi-hgi/docker-proxify</a>&nbsp;- Allows building and running docker container images from behind a corporate proxy</li>
<li><a href="https://github.com/tokuhirom/p5-psgiref">tokuhirom/p5-psgiref</a>&nbsp;- (DEPRECATED)just a prototype!</li>
<li><a href="https://github.com/robelix/hard-dj">robelix/hard-dj</a>&nbsp;- arduino based DJ MIDI cotroller using Harddisks as jog wheels</li>
<li><a href="https://github.com/rjbs/dzil.org">rjbs/dzil.org</a>&nbsp;- the source for dzil.org</li>
<li><a href="https://github.com/perldoc-jp/module-pod-jp">perldoc-jp/module-pod-jp</a>&nbsp;- 日本語訳したモジュールをおく場所その2</li>
<li><a href="https://github.com/motemen/Plack-Middleware-WebSocket">motemen/Plack-Middleware-WebSocket</a>&nbsp;- WebSocket handshake helper middleware</li>
<li><a href="https://github.com/kivitendo/kivitendo-erp">kivitendo/kivitendo-erp</a>&nbsp;- Web-based ERP system for the German market</li>
<li><a href="https://github.com/hinrik/hailo">hinrik/hailo</a>&nbsp;- A conversation bot using Markov chains</li>
<li><a href="https://github.com/g0v/moedict-data-csld">g0v/moedict-data-csld</a>&nbsp;- 中華語文知識庫 資料檔</li>
<li><a href="https://github.com/freenode/gms">freenode/gms</a>&nbsp;- Group Management System</li>
<li><a href="https://github.com/doy/reply">doy/reply</a>&nbsp;- read, eval, print, loop, yay!</li>
<li><a href="https://github.com/digitalbazaar/json-ld">digitalbazaar/json-ld</a>&nbsp;- A Context-based JSON Serialization for Linked Data</li>
<li><a href="https://github.com/dcantrell/ldap-for-dhcp">dcantrell/ldap-for-dhcp</a>&nbsp;- OpenLDAP support for dhcpd in ISC dhcp</li>
<li><a href="https://github.com/cjfields/biome">cjfields/biome</a>&nbsp;- An experimental Moose-based BioPerl implementation</li>
<li><a href="https://github.com/brennen/git-feed">brennen/git-feed</a>&nbsp;- git-feed: a script to generate Atom feeds for git commit logs</li>
<li><a href="https://github.com/bobthecow/PHP-HTML.mode">bobthecow/PHP-HTML.mode</a>&nbsp;- A fork of Coda 1.x's PHP-HTML syntax mode. Doesn't work with 2.x :(</li>
<li><a href="https://github.com/ant0ine/MongoDB-RDF">ant0ine/MongoDB-RDF</a>&nbsp;- Stores RDF-JSON documents in MongoDB</li>
<li><a href="https://github.com/adrian-bl/bitflu">adrian-bl/bitflu</a>&nbsp;- Bitflu BitTorrent Client</li>
<li><a href="https://github.com/MG-RAST/MG-RAST">MG-RAST/MG-RAST</a>&nbsp;- metagenomic analysis server site code</li>
<li><a href="https://github.com/xaicron/pm-uninstall">xaicron/pm-uninstall</a>&nbsp;- Uninstall modules</li>
<li><a href="https://github.com/windytan/bitocular">windytan/bitocular</a>&nbsp;- A tool to quickly examine the general structure of a file.</li>
<li><a href="https://github.com/toreanderson/clatd">toreanderson/clatd</a>&nbsp;- A 464XLAT CLAT implementation for Linux</li>
<li><a href="https://github.com/sitaramc/map">sitaramc/map</a>&nbsp;- Simpler than xargs. More power than xargs.</li>
<li><a href="https://github.com/silvansky/macscripts">silvansky/macscripts</a>&nbsp;- My Mac OS X scripts for different needs (may need some of my Mac OS X command line utils)</li>
<li><a href="https://github.com/nekokak/p5-Kamui">nekokak/p5-Kamui</a>&nbsp;- Plack base framework</li>
<li><a href="https://github.com/nabokov/mecab-dic-overdrive">nabokov/mecab-dic-overdrive</a>&nbsp;- create new mecab dic file, with score adjustment in accordance with existing terms.</li>
<li><a href="https://github.com/miyagawa/Catalyst-Engine-PSGI">miyagawa/Catalyst-Engine-PSGI</a>&nbsp;- PSGI engine for Catalyst</li>
<li><a href="https://github.com/melo/scripts">melo/scripts</a>&nbsp;- My personal script stash</li>
<li><a href="https://github.com/liedekef/spacewalk_scripts">liedekef/spacewalk_scripts</a>&nbsp;- Several spacewalk scripts</li>
<li><a href="https://github.com/kraih/mojolicio.us">kraih/mojolicio.us</a>&nbsp;- Mojolicious Website</li>
<li><a href="https://github.com/interconnectapp/discuss">interconnectapp/discuss</a>&nbsp;- A place to discuss interconnect</li>
<li><a href="https://github.com/glidenote/dotfiles">glidenote/dotfiles</a>&nbsp;- my dotfiles</li>
<li><a href="https://github.com/elubow/ec2-consistent-snapshot">elubow/ec2-consistent-snapshot</a>&nbsp;- EC2 Consistent Snapshot with Mongo Support</li>
<li><a href="https://github.com/dalibo/pgshark">dalibo/pgshark</a>&nbsp;- Messing with PostgreSQL network traffic to make some usefull things</li>
<li><a href="https://github.com/clkao/AnyMQ">clkao/AnyMQ</a>&nbsp;- Simple message queue based on AnyEvent</li>
<li><a href="https://github.com/chrisbra/vim_faq">chrisbra/vim_faq</a>&nbsp;- The Vim FAQ from&nbsp;<a href="http://vimdoc.sourceforge.net/">http://vimdoc.sourceforge.net/</a></li>
<li><a href="https://github.com/PerlDancer/advent-calendar">PerlDancer/advent-calendar</a>&nbsp;- Articles for the advent calendar</li>
<li><a href="https://github.com/Kimtaro/jisho.org">Kimtaro/jisho.org</a>&nbsp;- The source for classic.jisho.org</li>
<li><a href="https://github.com/shoorick/mojowka">shoorick/mojowka</a>&nbsp;- Small wiki based on top of Mojolicious::Lite</li>
<li></li></ul>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12111/internship-program-with-arraygen-technolgies</guid>
  <pubDate>Sun, 22 Jun 2014 23:18:31 -0500</pubDate>
  <link></link>
  <title><![CDATA[Internship program with ArrayGen Technolgies]]></title>
  <description><![CDATA[
<p>Internship Program for Bioinformatics / Biotechnology Professionals Currently we offer positions to outstanding students interested in Next Generation Sequencing (NGS) data analysis. Applications are accepted throughout the year. Accepted students will be listed on web with their schedules. Accepted students can attend our future workshops and trainings freely at the specified venue.</p>

<p>Interested candidates may email their resume along with a cover letter to careers@arraygen.com</p>

<p>Official website: http://www.arraygen.com/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36857/%E2%80%9Cone-code-to-find-them-all%E2%80%9D-a-perl-tool-to-conveniently-parse-repeatmasker-output-files</guid>
	<pubDate>Mon, 04 Jun 2018 03:45:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36857/%E2%80%9Cone-code-to-find-them-all%E2%80%9D-a-perl-tool-to-conveniently-parse-repeatmasker-output-files</link>
	<title><![CDATA[“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files]]></title>
	<description><![CDATA[One code to find them all is a set of perl scripts to extract useful information from RepeatMasker about transposable elements, retrieve their sequences and get some quantitative information.

Assemble RepeatMasker hits into complete TE copies, including LTR-retrotransposon
Retrieve corresponding TE sequences, and flanking sequences, from the local fasta files
Compute summary statistics for each TE family (number of TE copies, genome coverage...)
Ambiguous cases such as nested TE can be assembled into copies automatically or manually
Allow for working with a TE user-defined library
Allow for working with only a user-chosen set of TE families


http://doua.prabi.fr/software/one-code-to-find-them-all<p>Address of the bookmark: <a href="http://doua.prabi.fr/software/one-code-to-find-them-all" rel="nofollow">http://doua.prabi.fr/software/one-code-to-find-them-all</a></p>]]></description>
	<dc:creator>Poonam Mahapatra</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12566/jrf-at-national-research-centre-on-plant-biotechnology</guid>
  <pubDate>Fri, 04 Jul 2014 13:36:02 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF at NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY]]></title>
  <description><![CDATA[
<p>NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY</p>

<p>New Delhi-110012</p>

<p>Walk in interview</p>

<p>Eligible candidates may appear for Walk-in interview for the temporary positions of JRF/SRF/ RA, in ICAR, DBT funded research projects. Positions are purely temporary in nature and are co-terminus with the projects. The initial appointment will be for maximum one year, which can be extended on the basis of assessment of the candidate performance and need in the project work (PI-Dr. N. K. Singh, National Professor).</p>

<p>Name of the</p>

<p>PI (Project)<br />	</p>

<p>Name of</p>

<p>Position<br />	</p>

<p>Number of</p>

<p>positions<br />	</p>

<p>Emoluments</p>

<p>Fixed per</p>

<p>month (Rs.)<br />	</p>

<p>Essential</p>

<p>Qualifications</p>

<p>DBT-“Physical Mapping and Sample sequencing of Wheat Chromosome 2A- International Wheat Genome Sequencing Consortium (India)”.</p>

<p>(Up to Nov,2014)</p>

<p>DBT- Identification and functional analysis of genes related to yield and biotic stresses (Up to Oct,2014)</p>

<p>NPTC-Central Facility<br />	</p>

<p>RA (Master)</p>

<p>JRF/SRF</p>

<p>Research Associate: One</p>

<p>Essential: MCA or M. Tech. (Bioinformatics and computer Science with 2 years experience in Database Management with</p>

<p>MySQL, Linux)</p>

<p>Desirable: Proficiency in handling of large biological databases</p>

<p>Age limit: Max. Age 35 years (Age of relaxation of 5 years for SC/ST&amp; woman. and 3 years for OBC). The interview will be held on 08 July, 2014 at 11 am at room no. 39, NRCPB, LBS Building, Pusa Campus, New Delhi-110012. The candidates must bring original certificates and four copies of biodata, and recent passport size photograph. No TA/DA would be given for the appearance in interview. Only the candidates having essential qualifications would be entertained for the interviews.</p>

<p>Advertisement:</p>

<p>www.nrcpb.org/sites/default/files/news%20paper%20advirtisment..docx</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/989/bioinformatics-approach-to-boar-taint</guid>
	<pubDate>Wed, 17 Jul 2013 15:50:37 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/989/bioinformatics-approach-to-boar-taint</link>
	<title><![CDATA[Bioinformatics approach to Boar Taint]]></title>
	<description><![CDATA[<p><span>Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex genetic trait called boar taint.Androstenone and Skatole&nbsp;in the fat primarily cause boar taint. Metabolism of androstenone and sex steroids share a common pathway which makes removal of boar taint a very challenging task. Castration is a traditional solution to remove boar taint but it also results in bad quality of meat due to low level of steroids which is objectionable to many consumers. Detected functional variant(s) underlying boar taint compounds can be used as genetic markers in selection of male pigs with reduced boar taint levels. Resequencing of a total of 47 samples belong to Norwegian Landrace (NL) and Duroc (D) pigs with varied boar taint levels were done in Illumina HiSeq2000 to &gt;10X average coverage. Short reads generated from these samples mapped to&nbsp;<em>Sus Scrofa</em>&nbsp;version 10.2 reference assembly using Bowtie2. Alignment file then used for calling SNPs and InDels inside previousy identified QTL regions on SSC5,13, and 7 with the aid of FreeBayes , a variant caller tool. A final list of SNPs was prepared after filtering SNPs on the basis of SNP quality, coverage of SNP allele, functional and structural annotation, and repeats, etc. Selected SNPs will be genotyped in sample population for validation and then used for constructing SNPs haplotypes in close linkage disequilibrium with QTLs and fine mapping of QTLs through association mapping of genotyped SNPs.</span><span>&nbsp;</span></p><p><span>&nbsp;</span></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/989" length="19688" type="image/jpeg" />
</item>

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