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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/32154?offset=1030</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/22393/narcis-fernandez-fuentes-lab</guid>
  <pubDate>Mon, 25 May 2015 07:30:00 -0500</pubDate>
  <link></link>
  <title><![CDATA[Narcis Fernandez-Fuentes Lab]]></title>
  <description><![CDATA[
<p>Welcome to our web-site compiling all the research-related activities of the group. Our research interests relate to a number of areas within Bioinformatics. We have a long-standing interest in protein structure prediction and structure-to-function relationships. We work in the study of biomolecular interactions, modeling of protein complexes, the study and characterization of protein-protein interactions, peptide design, modeling of genetic variation, structure-based protein design and different aspects of Plant Bioinformatics. Take a look at the our databases and servers and the list of publications for more information.</p>

<p>More at http://www.bioinsilico.org/</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42497/genome-assembly-training-tutorial-at-galaxy</guid>
	<pubDate>Sun, 27 Dec 2020 05:25:45 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42497/genome-assembly-training-tutorial-at-galaxy</link>
	<title><![CDATA[Genome assembly training tutorial at Galaxy !]]></title>
	<description><![CDATA[<p>In this tutorial we assemble and annotate the genome of <em>E. coli</em> strain <a href="http://cgsc2.biology.yale.edu/Strain.php?ID=8232">C-1</a>. This strain is routinely used in experimental evolution studies involving bacteriophages. For instance, now classic works by Holly Wichman and Jim Bull (<a href="https://training.galaxyproject.org/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html#Bull1997">Bull 1997</a>, <a href="https://training.galaxyproject.org/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html#Bull1998">Bull 1998</a>, <a href="https://training.galaxyproject.org/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html#Wichman1999">Wichman 1999</a>) have been performed using this strain and bacteriophage phiX174.</p><p>Address of the bookmark: <a href="https://training.galaxyproject.org/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html" rel="nofollow">https://training.galaxyproject.org/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22431/genomic-scientist-at-udsc</guid>
  <pubDate>Thu, 28 May 2015 19:14:23 -0500</pubDate>
  <link></link>
  <title><![CDATA[Genomic Scientist at UDSC]]></title>
  <description><![CDATA[
<p>Centre for Genetic Manipulation of Crop Plants</p>

<p>Department of Genetics</p>

<p>University of Delhi South Campus</p>

<p>NEW DELHI – 110 021</p>

<p>WALK-IN-INTERVIEW FOR THE TEMPORARY POSITIONS OF RESEACH SCIENTIT &amp; LAB / FIELD ATTENDANT</p>

<p>1 Research Scientist (RS) – 3</p>

<p>    DBT, Ph. D.</p>

<p>    Experience on DNA Markers, plant genome mapping and bioinformatics</p>

<p>    Salary: 60,000 (Consolidated) + 5% annual increment</p>

<p>    Date and time: 25.06.2015 at 10:30 AM</p>

<p>These temporary positions have been sanctioned in a DBT funded project for the Phase II on ‘Centre of Excellence on genome mapping and molecular breeding of Brassicas.’</p>

<p>The applicants are requested to register their names on the day of interview in the First Floor, Biotech Centre, Centre for Genetic Manipulation of Crop Plants, Department of Genetics before the stipulated time for the interview. Only the registered eligible candidates will be interviewed on the day in the Committee Room.</p>

<p>Applicants are requested to bring all related documents, in original and a set of photocopy, for verification.</p>

<p>No TA/DA will be paid for attending the interview.</p>

<p>Advertisement:</p>

<p>www.du.ac.in/du/index.php?mact=News,cntnt01,detail,0&amp;cntnt01articleid=5492&amp;cntnt01returnid=83</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43110/quasimodo-quasispecies-metric-determination-on-omics</guid>
	<pubDate>Sat, 26 Jun 2021 15:22:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43110/quasimodo-quasispecies-metric-determination-on-omics</link>
	<title><![CDATA[QuasiModo - Quasispecies Metric Determination on Omics]]></title>
	<description><![CDATA[<p><span>This repository contains the scripts and pipeline that reproduces the results of the HCMV benchmarking study. In this study we evaluated genome assemblers and variant callers on 10 in vitro generated, mixed strain HCMV sequence samples, each consisting of two lab strains in different abundance ratios. This tool can also be used to evaluate assemblies and variant calling results on other similar datasets.</span></p>
<p><span>https://academic.oup.com/bib/article/22/3/bbaa123/5868070</span></p><p>Address of the bookmark: <a href="https://github.com/hzi-bifo/Quasimodo" rel="nofollow">https://github.com/hzi-bifo/Quasimodo</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22432/walk-ins-for-jrf-ans-srf-post-in-assam-agricultural-university</guid>
  <pubDate>Thu, 28 May 2015 19:16:47 -0500</pubDate>
  <link></link>
  <title><![CDATA[Walk-ins for JRF ans SRF post in Assam Agricultural University]]></title>
  <description><![CDATA[
<p>Distributed Information Centre<br />Department of Agricultural Biotechnology<br />Assam Agricultural University<br />Jorhat – 785 013<br />Walk-in interview</p>

<p>(ABT/DIC/01/2014 (No. AAU/ABT/DIT/Advt. 01/2015/111 Dtd. 19-05-2015)</p>

<p>Walk in interview for the following position will be held on 6th June, 2015 at 10.00AM in the Office Chamber of the undersigned. Candidates may appear for the interview with bio-data, reprints / publication / thesis etc and passport size photographs, original and attested copies of all testimonials etc, which must be presented at the time of interview. The applicants may submit their resume in advance tomkmodi@aau.ac.in.</p>

<p>Research Associate</p>

<p>    Ph.D. in Biotechnology/ Bioinformatics. Or</p>

<p>    Masters degree in Biotechnology/Bioinformatics with minimum 3(three) years research experience</p>

<p>    Desirable : Experience in Bioinformatics as evidenced from published research</p>

<p>    Rs 36,000+HRA for the 1st two years and 38,000+HRA for the 3rd year.</p>

<p>Senior Research Fellow</p>

<p>    Master Degree in Biotechnology/ Bioinformatics. With 2 (two) years  Experience in Bioinformatics as evidenced from Course work/ Diploma/Published research</p>

<p>    Rs 28,000+HRA for NET qualified candidate/Professional degree holder</p>

<p>    Rs 18,000+HRA for non-NET qualified general degree holder</p>

<p>Junior Research Fellow</p>

<p>    Master Degree in Biotechnology/ Bioinformatics/Computer Science/Computer Application</p>

<p>    Desirable: Experience in Bioinformatics as evident from Course work/ Diploma/Published research</p>

<p>    Rs 25,000+HRA for NET qualified candidate/Professional degree holder</p>

<p>    Rs 16,000+HRA for non-NET qualified general degree holder</p>

<p>Note: Term and conditions will be as per the DBT, Govt of India guidelines.</p>

<p>Advertisement: http://14.139.222.145/classified/biotech46.html</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43427/ogdraw-draw-organelle-genome-maps</guid>
	<pubDate>Tue, 05 Oct 2021 03:34:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43427/ogdraw-draw-organelle-genome-maps</link>
	<title><![CDATA[OGDRAW - Draw Organelle Genome Maps]]></title>
	<description><![CDATA[<p>OrganellarGenomeDRAW converts annotations in the&nbsp;<a href="https://www.ncbi.nlm.nih.gov/genbank/">GenBank</a>&nbsp;or&nbsp;<a href="https://www.ebi.ac.uk/ena">EMBL/ENA</a>&nbsp;format into graphical maps. The input has to be a&nbsp;<a href="https://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html">GenBank&nbsp;</a>or&nbsp;<a href="https://www.ebi.ac.uk/ena/submit/flat-file">EMBL/ENA flat file</a>&nbsp;wherase the output can vary among several types of files. The application is optimized to create detailed high-quality maps of organellar genomes (plastid and mitochondria). Nevertheless, you can upload most<span style="color: #0b0118;">&nbsp;database</span>&nbsp;entries.</p>
<p>&nbsp;</p>
<p>Please take a look at our&nbsp;<a href="https://chlorobox.mpimp-golm.mpg.de/OGDraw-FAQ.html">FAQ section</a>&nbsp;and do not hesitate to report bugs or suggestions for improvements by&nbsp;<a href="mailto:chlorobox@mpimp-golm.mpg.de?subject=OGDRAW">email</a>.</p><p>Address of the bookmark: <a href="https://chlorobox.mpimp-golm.mpg.de/OGDraw.html" rel="nofollow">https://chlorobox.mpimp-golm.mpg.de/OGDraw.html</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22512/srf-post-in-nehu-shillong</guid>
  <pubDate>Wed, 03 Jun 2015 13:15:38 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF post in NEHU, Shillong]]></title>
  <description><![CDATA[
<p>Dept of Biochemistry <br />North-Eastern Hill University<br />(A University with Potential for Excellence) <br />Umshing, Shillong- 793 022</p>

<p>Applications are invited for the post of Senior Research Fellow- SRF (1) and Junior Research Fellow- JRF (1) to be appointed in a SERB-funded major research project entitled “Biochemical and functional properties of Synechocystis Glutathione S-transferase(s)” sanctioned to Dr. Timir Tripathi, Molecular and Structural Biophysics Laboratory, Department of Biochemistry, NEHU, Shillong. </p>

<p>Essential Qualifications: For both positions M.Sc. or equivalent with a good academic record is a prerequisite. </p>

<p>For Project-SRF, experience in bioinformatics/computational biology is required, which should be evident by atleast one good publication. </p>

<p>For JRF position, freshers can also apply. </p>

<p>Stipend: As per SERB norms. </p>

<p>Interested students can email their detailed bio-data including mobile number and recent photograph to msb.biochem@gmail.com, latest by 20.06.15. The hard copy is not required. The date of interview will be informed after primary scrutiny of the applications. No TA/DA will be paid if called for interview. For details of the research work of the PI’s group kindly visit www.ttripathi.webs.com</p>

<p>Advertisement: http://www.nehu.ac.in/Advertisements/BiochemSERB_Advt_020615.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43690/ucsc-sars-cov-2-genome-browser</guid>
	<pubDate>Thu, 06 Jan 2022 06:48:40 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43690/ucsc-sars-cov-2-genome-browser</link>
	<title><![CDATA[UCSC SARS-CoV-2 Genome Browser]]></title>
	<description><![CDATA[<p><span>The UCSC SARS-CoV-2 Genome Browser (</span><a href="https://genome.ucsc.edu/covid19.html">https://genome.ucsc.edu/covid19.html</a><span>) is an adaptation of our popular genome-browser visualization tool for this virus, containing many annotation tracks and new features, including conservation with similar viruses, immune epitopes, RT&ndash;PCR and sequencing primers and CRISPR guides. We invite all investigators to contribute to this resource to accelerate research and development activities globally.</span></p><p>Address of the bookmark: <a href="https://www.nature.com/articles/s41588-020-0700-8" rel="nofollow">https://www.nature.com/articles/s41588-020-0700-8</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/22569/reverse-complement-problem-solved-with-perl</guid>
	<pubDate>Tue, 09 Jun 2015 23:37:23 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/22569/reverse-complement-problem-solved-with-perl</link>
	<title><![CDATA[Reverse Complement Problem Solved with Perl]]></title>
	<description><![CDATA[<p>Question at http://rosalind.info/problems/1b/</p><p>#Find the reverse complement of a DNA string.<br />#Given: A DNA string Pattern.<br />#Return: Pattern, the reverse complement of Pattern.<br /><br />use strict;<br />use warnings;<br /><br />my $string="AAAACCCGGT";<br />my $finalString="";<br />my %hash = (<br />&nbsp;&nbsp; &nbsp;"C" =&gt; "G", <br />&nbsp;&nbsp; &nbsp;"A" =&gt; "T", <br />&nbsp;&nbsp; &nbsp;"T" =&gt; "A", <br />&nbsp;&nbsp; &nbsp;"G" =&gt; "C",<br />);<br /><br />for (my $aa=0; $aa&lt;=(length($string)-1); $aa++) {<br />&nbsp;&nbsp; &nbsp;my $char=substr $string, $aa, 1;<br />&nbsp;&nbsp; &nbsp;#print $hash{$char};<br />&nbsp;&nbsp; &nbsp;$finalString="$hash{$char}"."$finalString";<br />}<br /><br />print $finalString;<br />print "\n";</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43859/mumco-is-a-simple-bash-script-that-uses-whole-genome-alignment-information-provided-by-mummer-v4-to-detect-variants</guid>
	<pubDate>Wed, 27 Apr 2022 04:34:12 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43859/mumco-is-a-simple-bash-script-that-uses-whole-genome-alignment-information-provided-by-mummer-v4-to-detect-variants</link>
	<title><![CDATA[MUM&amp;Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (v4) to detect variants.]]></title>
	<description><![CDATA[<p dir="auto">MUM&amp;Co is able to detect:<br>Deletions, insertions, tandem duplications and tandem contractions (&gt;=50bp &amp; &lt;=150kb)<br>Inversions (&gt;=1kb) and translocations (&gt;=10kb)</p><p>Address of the bookmark: <a href="https://github.com/SAMtoBAM/MUMandCo" rel="nofollow">https://github.com/SAMtoBAM/MUMandCo</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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