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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/32190?offset=1120</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37230/navigator-network-analysis-visualization-and-graphing-toronto</guid>
	<pubDate>Tue, 03 Jul 2018 05:05:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37230/navigator-network-analysis-visualization-and-graphing-toronto</link>
	<title><![CDATA[NAViGaTOR: Network Analysis, Visualization and Graphing Toronto]]></title>
	<description><![CDATA[NAViGaTOR –  Network Analysis, Visualization, &amp; Graphing TORonto is a software system for scaleable visualizing and analyzing networks.

The current version, NAViGaTOR 3, increases modularity, improves scaleability, extends input/output options, brings new network views and analysis algorithms.

http://142.150.188.236/navigatorwp/<p>Address of the bookmark: <a href="http://142.150.188.236/navigatorwp/" rel="nofollow">http://142.150.188.236/navigatorwp/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28577/research-associate-computer-sciences-recruitment-in-national-bureau-of-plant-genetic-resources</guid>
  <pubDate>Thu, 28 Jul 2016 04:39:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate (Computer Sciences) recruitment in National Bureau of Plant Genetic Resources]]></title>
  <description><![CDATA[
<p>Research Associate (Computer Sciences) recruitment in National Bureau of Plant Genetic Resources</p>

<p>Project: Indo-UK Centre for improvement of Nitrogen use efficiency in wheat Dr. Soma S. Marla, Pr. Scientist (Bioinformatics), Division of Genomic Resources, ICAR, NBPGR, ND.</p>

<p>Qualification: Ph.D. Degree in Computer Sciences/Bioinformatics OR 1. First class Master’s degree in any discipline of Plant Sciences with specialization in Computer Sciences/ Bioinformatics having 1st division or 60% marks or equivalent overall grade point average with at least two years of research experience as evidenced from Fellowship/ Associate ship. 2. NET qualification is essential for the candidates with 3+2 years B.Sc.+ M.Sc. Desirable: Demonstrated experience &amp; skills in database design, management, UNIX OS, in NGS data analysis. Experience substantiated by publications of high quality will be preferred.</p>

<p>No.of Post: 1</p>

<p>Pay Scale: Rs. 40,000 (Ph.D)/ Rs + 30 % HRA; Rs.38,000 ( Masters Degree 0 + 30 % HRA).</p>

<p>Age Limit : below 40 years for RA position<br />How to apply<br />Applicants for RA post should send their complete CV (Advance copy of the application may be sent by email to :soma.marla@icar.gov.in or ssmarl@yahoo.com, should enclose the copy of the research publications; one page summary of their achievement relevant to the post applied for; and should enclose two reference letters (one must be from the person with whom worked latest). Shortlisted candidate will be intimated for interview by email.</p>

<p>The candidates who wish to attend the walk-in interview are requested to bring with them five copies of the CV (one copy with photograph) as per the format given below. Also, the candidates should bring the original documents such as degree certificates, marks sheets, publications, thesis, experience certificate etc. for verification. </p>

<p>Date of Interview: 17.8.2016.</p>

<p>More at http://www.nbpgr.ernet.in/Downloadfile.aspx?EntryId=7133</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37982/raven-a-software-suite-for-matlab-that-allows-for-semi-automated-reconstruction-of-genome-scale-models</guid>
	<pubDate>Wed, 24 Oct 2018 22:38:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37982/raven-a-software-suite-for-matlab-that-allows-for-semi-automated-reconstruction-of-genome-scale-models</link>
	<title><![CDATA[RAVEN: a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models]]></title>
	<description><![CDATA[<p><span>The RAVEN (Reconstruction, Analysis and Visualization of Metabolic Networks) Toolbox 2 is a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models (GEMs). It makes use of published models and/or KEGG, MetaCyc databases, coupled with extensive gap-filling and quality control features. The software suite also contains methods for visualizing simulation results and omics data, as well as a range of methods for performing simulations and analyzing the results. The software is a useful tool for system-wide data analysis in a metabolic context and for streamlined reconstruction of metabolic networks based on protein homology.</span></p><p>Address of the bookmark: <a href="https://github.com/SysBioChalmers/RAVEN" rel="nofollow">https://github.com/SysBioChalmers/RAVEN</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28618/jrf-bioinformatics-at-dpu-india</guid>
  <pubDate>Fri, 05 Aug 2016 03:06:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at DPU, India]]></title>
  <description><![CDATA[
<p>Advertisement for position of “JRF (Junior Research Fellow)” on DST research project “Molecular modeling and docking studies on Deguelin and its derivatives with cell cycle arrest, apoptosis and anti-angiogenesis pathway proteins in cancer cell signaling pathway”</p>

<p>Applications are invited on plain paper from eligible candidates along with biodata and copies of certificates in support of age, qualification and experience for the following position:</p>

<p>Particulars Description</p>

<p>1. Position &amp; No. JRF (Junior Research Fellow) 01</p>

<p>2. Title of the Project Molecular modeling and docking studies on Deguelin and its derivatives with cell cycle arrest, apoptosis and anti-angiogenesis pathway proteins in cancer cell signaling pathway</p>

<p>3. Tenure 3 years</p>

<p>4. Investigator Dr. K. V.Swamy</p>

<p>5. Institute Dr. D. Y. Patil Biotechnology and Bioinformatics Institute, Tathawade, Pune 411033.</p>

<p>5. Qualifications/Eligibility</p>

<p>Essential: NET (National Eligibility Test) qualified M. Sc Bioinformatics/ M. Tech Bioinformatics/M. Sc Biotechnology/M. Tech Biotechnology or Graduate degree in Professional course with NET qualification or Post graduation degree in professional course</p>

<p>The following examinations conducted by various Central Government Departments/Agencies are considered as National Eligibility Test (NET).</p>

<p>1. CSIR-UGC-LS <br />2. GATE (Graduate Aptitude Test in Engineering) <br />3. JAM (Joint Admission Test) <br />4. GPAT (Graduate Pharmacy Aptitude Test) <br />5. BET(Biotechnology Eligibility Test) <br />6. BINC(Bioinformatics National Consortium) <br />7. JEST( Joint Entrance Screening Test) <br />8. JGEEBILS(Joint Graduate Entrance Examination for Biology &amp; Interdisciplinary Life Sciences) <br />9. NBHM Ph.D scholarship Screening Test <br />10. ICMR- JRF Entrance Examination <br />11. AICE (ICAR-All India competitive Examination ) <br />(For all above examinations valid score considered at the time of interview)</p>

<p>Desirable: Knowledge and skills in Bioinformatics tools/ softwares</p>

<p>6. Monthly Emoluments Rs.25,000/ (As per DST-SERB rules)</p>

<p>7. Last date for submission of prescribed application 20/08/2016</p>

<p>Kindly send your applications to “Dr. K. V. Swamy, Asst.Professor, Dr. D. Y. Patil Biotechnology &amp; Bioinformatics Institute, Survey No. 87/88, Mumbai-Pune Express Way, Tathawade, Pune - 411033, Maharashtra, India”. Highlight the envelope with “Application for post of JRF (Junior Research Fellow)”.</p>

<p>Note: No TA/DA will be paid for attending the interview.</p>

<p>Advertisement: http://careers.dpu.edu.in/Biotech.aspx</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41820/shinygo-v061-gene-ontology-enrichment-analysis-more</guid>
	<pubDate>Wed, 03 Jun 2020 08:00:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41820/shinygo-v061-gene-ontology-enrichment-analysis-more</link>
	<title><![CDATA[ShinyGO v0.61: Gene Ontology Enrichment Analysis + more]]></title>
	<description><![CDATA[<p>2/3/2020: Now published by&nbsp;<a href="https://doi.org/10.1093/bioinformatics/btz931" target="_blank">Bioinformatics.</a></p>
<p>11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more.</p>
<p>5/20/2019: V.0.60, Annotation database updated to Ensembl 96. New bacterial and fungal genomes based on STRING-db! Just paste your gene list to get enriched GO terms and othe pathways for over 315 plant and animal species, based on annotation from Ensembl (Release 96), Ensembl plants (R. 43) and Ensembl Metazoa (R. 43). An additional 2031 genomes (including bacteria and fungi) are annotated based on STRING-db (v.10). In addition, it also produces KEGG pathway diagrams with your genes highlighted, hierarchical clustering trees and networks summarizing overlapping terms/pathways, protein-protein interaction networks, gene characterristics plots, and enriched promoter motifs.&nbsp;</p><p>Address of the bookmark: <a href="http://bioinformatics.sdstate.edu/go/" rel="nofollow">http://bioinformatics.sdstate.edu/go/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28802/research-associate-bioinformatics-recruitment-in-icgeb-new-delhi</guid>
  <pubDate>Tue, 16 Aug 2016 03:38:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatics recruitment in ICGEB, New Delhi]]></title>
  <description><![CDATA[
<p>Research Associate Bioinformatics recruitment in ICGEB, New Delhi </p>

<p>Project :“Genetic Transformation and Development of Elite Transgenic Maize (Zea mays L.) for Biotic and Abiotic Stresses Tolerance”.</p>

<p>Qualification: Ph.D. degree in:Biotechnology/Bioinformatics/Biochemistry/Plant Molecular Biology/Plant Physiology/Botany or any related area with evidence of prior experience in maize transformation.</p>

<p>Additional experience in plant transformation of any cereal crop would be preferable.</p>

<p>The appointment would initially be for one year.</p>

<p>How to apply<br />Interested applicants should send their detailed CV including brief synopsis regarding the previous research experience (along withcontact email address by email) to: Dr. Tanushri Kaul (tanushri@icgeb.res.in). Group Leader, Nutritional Improvement of Crops Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110 067.</p>

<p>Closing date for applications: 22 August 2016.</p>

<p>More at http://www.icgeb.org/vacancies.html</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44188/understanding-go-analysis</guid>
	<pubDate>Wed, 08 Feb 2023 04:22:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44188/understanding-go-analysis</link>
	<title><![CDATA[Understanding GO analysis]]></title>
	<description><![CDATA[<p>The confusion about gene ontology and gene ontology analysis can start right from the term itself. There are actually two different entities that are commonly referred to as gene ontology or &ldquo;GO&rdquo;:</p>
<ol>
<li>the&nbsp;<span>ontology itself</span>, which is a set of terms with their precise definitions and defined relationships between them, and</li>
<li>the&nbsp;<span>associations between gene products and GO terms</span>, which are used to capture the existing knowledge about what each gene is known to do.</li>
</ol>
<p>But the term gene ontology, or GO, is commonly used to refer to both, which is sometimes a source of potential confusion. In order to avoid this, here we will use the term &ldquo;GO ontology&rdquo; to describe the set of terms and their hierarchical structure and &ldquo;GO annotations&rdquo; to describe the set of associations between genes and GO terms.</p>
<p>There are 3 types of terms, or domains if you wish, in the gene ontology:</p>
<ul>
<li>Biological Processes (BP)</li>
<li>Molecular Functions (MF)</li>
<li>Cellular Components (CC)</li>
</ul><p>Address of the bookmark: <a href="https://advaitabio.com/faq-items/understanding-gene-ontology/" rel="nofollow">https://advaitabio.com/faq-items/understanding-gene-ontology/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28889/project-scientist-at-national-agri-food-biotechnology-institute-nabi</guid>
  <pubDate>Thu, 25 Aug 2016 05:49:36 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Scientist at National Agri-Food Biotechnology Institute (NABI)]]></title>
  <description><![CDATA[
<p>Advt. No. NABI/8(18)/2012-PME-3<br />Project Scientist recruitment in National Agri-Food Biotechnology Institute (NABI)<br />Project Title : “Transfer and Evaluation of Indian Banana with Pro-Vitamin A (PVA) Constructs”<br />Essential qualifications:  Ph.D. thesis submitted/awarded in any branch of life/plant sciences. Desirable qualification: a) Excellent academic record with research experience in area relevant to plant metabolic engineering, molecular biology and bioinformatics supported with high quality publications. b) Knowledge and experience of Chromatography and Mass Spectrometry based technological analysis of samples. c) Knowledge and experience of in-silico analysis such as trascriptomics, proteomics and genomics. c) Relevant research publications in reputed international journals with high impact factors.<br />No. of Post : 01<br />Age: 35 years<br />Emoluments:  Rs.40,000/- per month.<br />How to apply<br />Walk-In-Interview on 29/08/2016 at National Agri-Food Biotechnology Institute, C-127, Industrial Area, Phase VIII, S.A.S. Nagar, Mohali-160 071 Email: siddharth@nabi.res.in</p>

<p>More at http://www.nabi.res.in/Vacancies/NABI/ResearchFellowships/JRFSRFRA/2016/NABI8(18)2012-PME-3/Advt.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44620/diy-transcriptomics</guid>
	<pubDate>Wed, 31 Jul 2024 01:19:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44620/diy-transcriptomics</link>
	<title><![CDATA[DIY Transcriptomics]]></title>
	<description><![CDATA[<p><span>A semester-long course covering best practices for the analysis of high-throughput sequencing data from gene expression (RNA-seq) studies, with a primary focus on empowering students to be independent in the use of lightweight and open-source software using the R programming language and the Bioconductor suite of packages. This course follows a hybrid format in which online lectures are paired with in-person labs where students participate in hands-on, live coding exercises using real &lsquo;omic datasets. The course is focused on datasets and topics central to infectious disease research, immunology, and One-Health, but the concepts and approaches covered are applicable to any genomic study.</span></p>
<p>https://diytranscriptomics.com</p><p>Address of the bookmark: <a href="https://diytranscriptomics.com" rel="nofollow">https://diytranscriptomics.com</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29217/bioinformatics-openings-at-sri-venkateswara-college-university-of-delhi</guid>
  <pubDate>Tue, 20 Sep 2016 05:43:24 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics openings at Sri Venkateswara College, University of Delhi]]></title>
  <description><![CDATA[
<p>Bioinformatics center</p>

<p>Sri Venkateswara College (University of Delhi)</p>

<p>New Delhi- 110021</p>

<p>1. Junior Research Fellow (1 Post)</p>

<p>Applications are invited for the post of Junior Research Fellow (JRF) under DST funded project which is purely temporary and is strictly for project duration only.</p>

<p>Title of project</p>

<p>No. of post</p>

<p>Remuneration (Rs.)</p>

<p>“Computational assisted Design and Synthesis of Novel Antimalarial Agents Embodying Structural Diversity Suitable for Protease Inhibitors”</p>

<p>(One)</p>

<p>Fellowship and HRA as per DST guidelines</p>

<p>Qualification</p>

<p>Post Graduate Degree in Basic Science (M.Sc./M.Tech in Bioinformatics/Biophysics) from a recognized University in India or abroad with at least 55% marks with NET qualification or Graduate Degree in Professional Course with NET Qualification or Post Graduate Degree in Professional Course.</p>

<p>Desirable</p>

<p>Fair knowledge of Computer Aided Drug Designing (CADD), Protein Structure modeling, molecular docking, and simulations are preferable.</p>

<p>2. Traineeship (1 Post)</p>

<p>Applications are invited for the position of traineeship in DBT-BTISnet funded Bioinformatics Infrastructure Facility (BIF) to carry out project work in the area of Bioinformatics.</p>

<p>Qualification</p>

<p>Applicant should be possess PG degree/PG diploma in Bioinformatics for traineeship. The traineeship is awarded for a period of six months from the date of joining and is not extendable. The selected candidates are entitled to receive a stipend of Rs. 8000/- per month (consolidate) for a period of 6 months.</p>

<p>=====================================================================</p>

<p>3. Studentship (1 Post)</p>

<p>Applications are invited for the position of Studentship in DBT-BTISnet funded Bioinformatics Infrastructure Facility (BIF) to carry out project work in the area of Bioinformatics.</p>

<p>Qualification</p>

<p>Candidates pursuing the Final Year of Post Graduate Degree in Basic Science (M.Sc.) or Post Graduate/ Graduate Degree in Professional Course (M.Tech/B.Tech) in Bioinformatics from a recognized University in India or abroad. The selected candidates are entitled to receive a stipend of Rs. 8000/- per month (consolidate) for a period of 6 months.</p>

<p>How to Apply?</p>

<p>Applicants are required to send applications on plain paper, stating the name, address, date of birth, educational qualification, experience and Institute, along with attested photocopies of mark sheets and certificates etc. by September 20, 2016 to:</p>

<p>The Coordinator</p>

<p>Bioinformatics Center, Sri Venkateswara College</p>

<p>Benito Juarez Road, Dhaula Kuan, New Delhi- 110021</p>

<p>Applications may also be sent by email to contact@bic-svc.ac.in. Strictly mention "Application for JRF, Traineeship or Studentship" in the subject line as the case may be.</p>

<p>Short listed candidates will be called for an interview. Canvassing in any form will be a disqualification. No TA/DA will be paid either for attending the interview or joining the post.</p>

<p>For more details visit our lab webpage: http://www.bic-svc.ac.in</p>
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