<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/32379?offset=990 https://bioinformaticsonline.com/bookmarks/view/42499/galaxy-training-resources Sun, 27 Dec 2020 05:28:07 -0600 https://bioinformaticsonline.com/bookmarks/view/42499/galaxy-training-resources <![CDATA[Galaxy Training Resources !]]> Welcome to Galaxy Training!

Collection of tutorials developed and maintained by the worldwide Galaxy community

TopicTutorials
Introduction to Galaxy Analyses 10
Assembly 6
Climate 3
Computational chemistry 6
Ecology 6
Epigenetics 6
Genome Annotation 3
Imaging 3
Metabolomics 4
Metagenomics 7
Proteomics 18
Sequence analysis 2
Statistics and machine learning 8
Transcriptomics 23
Variant Analysis 8
Visualisation 2

 

Address of the bookmark: https://training.galaxyproject.org/training-material/

]]> Jit https://bioinformaticsonline.com/bookmarks/view/43268/kmer-a-suite-of-tools-for-dna-sequence-analysis Wed, 18 Aug 2021 00:02:54 -0500 https://bioinformaticsonline.com/bookmarks/view/43268/kmer-a-suite-of-tools-for-dna-sequence-analysis <![CDATA[Kmer: a suite of tools for DNA sequence analysis]]> More at https://help.rc.ufl.edu/doc/Kmer

This also includes:

  • A2Amapper: ATAC, Assembly to Assembly Comparision tool:
    • Comparative mapping between two genome assemblies (same species), or between two different genomes (cross species).
  • Sim4db:
    • Spliced alignment of cDNA and genomic sequences, from the same (sim4) or related (sim4cc) species. Optimized for high-throughput batched alignment.
  • LEAFF:
    • LEAFF (ahem, Let's Extract Anything From Fasta) is a utility program for working with multi-fasta files. In addition to providing random access to the base level, it includes several analysis functions.
  • Meryl:
    • An out-of-core k-mer counter. The amount of sequence that can be processed for any size k depends only on the amount of free disk space.

Address of the bookmark: https://help.rc.ufl.edu/doc/Kmer

]]> BioStar https://bioinformaticsonline.com/opportunity/view/42801/scientist-position-in-structural-bioinformatics-at-lonza Wed, 03 Feb 2021 21:38:06 -0600 <![CDATA[Scientist position in Structural Bioinformatics at Lonza]]> Lonza (https://www.lonza.com/) are seeking a highly motivated and skilled (Senior) Scientist with experience in Structure-based Protein Engineering and Bioinformatics to join Lonza's Applied Protein Services (APS) Bioinformatics team based in Cambridge, UK.

More at https://instruct-eric.eu/jobs/scientist-position-in-structural-bioinformatics-at-lonza-cambridge-uk/

]]> https://bioinformaticsonline.com/bookmarks/view/43902/interactivenn-a-web-based-tool-for-the-analysis-of-sets-through-venn-diagrams Wed, 29 Jun 2022 03:22:26 -0500 https://bioinformaticsonline.com/bookmarks/view/43902/interactivenn-a-web-based-tool-for-the-analysis-of-sets-through-venn-diagrams <![CDATA[InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams]]> InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while preserving the shape of the diagram. Set unions are useful to reveal differences and similarities among sets and may be guided in our tool by a tree or by a list of set unions. The tool also allows obtaining subsets’ elements, saving and loading sets for further analyses, and exporting the diagram in vector and image formats. InteractiVenn has been used to analyze two biological datasets, but it may serve set analysis in a broad range of domains.

More at https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0611-3

image

Address of the bookmark: http://www.interactivenn.net/

]]> Jit https://bioinformaticsonline.com/pages/view/42814/bioinformatics-in-africa-part6-sudan Sat, 06 Feb 2021 21:20:59 -0600 https://bioinformaticsonline.com/pages/view/42814/bioinformatics-in-africa-part6-sudan <![CDATA[Bioinformatics in Africa: Part6 - Sudan]]> Commission for Biotechnology & Genetic Engineering ­ Khartoum: The Commission for Biotechnology and Genetic Engineering was established in 9/2/1993 as  research unit. In addition to research activities it acts as focal point for the International Center for  Biotechnology and Genetic Engineering. The commission conducts researches in order to play a part in solving economical, environmental,  health and nutritional problems using modern research techniques with an emphasis on the applied  researches in these areas. The laboratories were well furnished with the essential equipments and the catalyst infrastructure to  facilitate emergence of a successful for research. The Commission equipped with a computer center  and information to serve as informatics and Digital library.

Research Interest and Activities: 1. Plant Genetic Transformations
2. Molecular Population Genetics 3. Detection of human and Animals diseases 4. Breast Cancer­specific protein marker 5. Phytochemical 6. Genomic map 7. Bioremediation 8. Tissue Culture.

Web site and links: www.geocity.cbge.com

]]> BioStar https://bioinformaticsonline.com/opportunity/view/43262/bioinformatics-research-scientist-oklahoma-state-university-osu Tue, 17 Aug 2021 13:24:39 -0500 <![CDATA[Bioinformatics Research Scientist @ Oklahoma State University (OSU)]]> This position is an early career research scientist in the area of Bioinformatics to support research projects involving faculty and staff, at Oklahoma State University (OSU). This is a highly technical position that requires a strong research background in biomedical or life sciences, including a high level of expertise with bioinformatics algorithms, databases, and analyses with a focus on next-generation sequence data. Although most of the projects will deal directly with the analysis of DNA and RNA sequence data the individual should be well versed in other types of data sources as well (i.e., microarrays) and handling of large datasets (using data analytics, machine learning, and deep learning techniques).

More at https://okstate.csod.com/ats/careersite/JobDetails.aspx?site=8&id=9874

]]> https://bioinformaticsonline.com/bookmarks/view/33506/bedops-v2426-high-performance-genomic-feature-operations Mon, 12 Jun 2017 10:11:01 -0500 https://bioinformaticsonline.com/bookmarks/view/33506/bedops-v2426-high-performance-genomic-feature-operations <![CDATA[BEDOPS v2.4.26: high-performance genomic feature operations]]> BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data.

The overview section of the BEDOPS v2.4.26 documentation summarizes the toolkit, functionality and performance enhancements. The reference table offers documentation for all applications and scripts.

Address of the bookmark: https://github.com/bedops/bedops

]]> Jit https://bioinformaticsonline.com/bookmarks/view/43390/getting-started-with-nextflow Sat, 18 Sep 2021 01:28:41 -0500 https://bioinformaticsonline.com/bookmarks/view/43390/getting-started-with-nextflow <![CDATA[Getting Started with Nextflow]]> Introduction to Bioinformatics workflows with Nextflow and nf-core

Getting Started with Nextflow

Objectives Understand

What a workflow management system is.

Understand the benefits of using a workflow management system.

Explain the benefits of using Nextflow as part of your bioinformatics workflow.

Explain the components of a Nextflow script.

Run a Nextflow script.

Introduction to Bioinformatics workflows with Nextflow and nf-core

Getting Started with Nextflow

Address of the bookmark: https://carpentries-incubator.github.io/workflows-nextflow/aio/index.html

]]> LEGE https://bioinformaticsonline.com/view/459 Thu, 11 Jul 2013 14:39:19 -0500 https://bioinformaticsonline.com/view/459 <![CDATA[Python vs Perl]]> Why bioinformatician still using Perl when Python is easy to code, good in ReXp and faster than perl?

]]> Rahul Agarwal https://bioinformaticsonline.com/researchlabs/view/43817/bioinfo-lab Fri, 04 Mar 2022 00:17:00 -0600 <![CDATA[Bioinfo Lab]]> The Institute of Bioinformatics conducts internationally renowned research and provides profound education in bioinformatics. Its research focuses on development and application of machine learning and statistical methods in biology and medicine.

Contact:
Computer Science Building (Science Park 3)
Altenberger Str. 69, A-4040 Linz, Austria
Tel. +43 732 2468 4520 / Fax +43 732 2468 4539
E-mail secretary@bioinf.jku.at

http://www.bioinf.jku.at/

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