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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/32399?offset=290</link>
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	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27211/srbioinformatics-analyst-ngs-ocimumbio</guid>
  <pubDate>Mon, 02 May 2016 04:41:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Sr.Bioinformatics Analyst (NGS) @ OcimumBio]]></title>
  <description><![CDATA[
<p>Sr.Bioinformatics Analyst (NGS)</p>

<p>Experience Required: 3-5 years of experience<br />No of Positions : Multiple<br />Qualifications: Candidates with minimum qualification as M.Sc Bioinformatics with 3-5  years of experience in Life sciences R&amp;D or Pharma Industry.<br />Ph.D candidates with research experience in Bioinformatics with publications in International journal and minimum 2 years of  industry experience in clinical genomics will be preferred for this position.</p>

<p>Requirement:</p>

<p>1.  Must have basic understanding of molecular biology and Genomics.<br />2. Experience in application development or must have expertise in programming using either of Perl/Python.<br />3.  Experience in statistical programming using R/Bioconductor/Matlab.<br />4. Strong concept in statistical and mathematical modelling.<br />5.  Experience in designing and developing the bioinformatics pipeline.<br />6.  Must have minimum 2+ years of hands on experience in NSG data analysis such as RNA-Seq,Exome-Seq ,Chip-Seq and downstream analysis.<br />7. Knowledge in WGS ,WES, Targeted re-sequencing,GWAS and population genomics will be preferred.<br />8. Must have experience working on opensource software/Framework and commercial software for NGS data analysis and reporting.<br />9. Should be aware of handling big data and guiding team members on multiple projects simultaneously.<br />More at http://www.ocimumbio.com/careers1/<br />10. Should have experience coordinating with different groups of clinical research scientist for various project requirements.<br />11. Ability to work as team as well as independently with minimal support.</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/27235/supposedly-educational-r</guid>
	<pubDate>Tue, 03 May 2016 16:43:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/27235/supposedly-educational-r</link>
	<title><![CDATA[Supposedly Educational R]]></title>
	<description><![CDATA[<p>R 3.3.0 (codename &ldquo;Supposedly Educational&rdquo;)&nbsp;was <a href="http://r.789695.n4.nabble.com/R-3-3-0-is-released-td4720368.html" target="_blank">released today</a>.&nbsp;You can get the latest binaries version <strong><a href="http://cran.rstudio.com/" target="_blank">from here</a>.</strong>&nbsp;(or the .tar.gz&nbsp;<strong>source</strong> code from <a href="http://cran.r-project.org/src/base/R-3/R-3.3.0.tar.gz" target="_blank">here</a>).&nbsp;The full list of new features and bug fixes is provided below.</p><p>If you are using <strong>Windows&nbsp;</strong>you can easily upgrade to the latest version of R using <a href="http://cran.r-project.org/web/packages/installr/" target="_blank">the installr package</a>. Simply run the following code in Rgui:</p><div><table width="710">
<tbody>
<tr id="p613882">
<td id="p61388code2">
<pre><span style="color: #0000ff; font-weight: bold;">install.<span>packages</span></span><span style="color: #080;">(</span><span style="color: #ff0000;">"installr"</span><span style="color: #080;">)</span> <span style="color: #228b22;"># install </span>
setInternet2<span style="color: #080;">(</span>TRUE<span style="color: #080;">)</span>
installr<span style="color: #080;">::</span><span>updateR</span><span style="color: #080;">(</span><span style="color: #080;">)</span> <span style="color: #228b22;"># updating R.</span></pre>
</td>
</tr>
</tbody>
</table></div><p><span>Running &ldquo;updateR()&rdquo; will detect if there is a new R version available, and if so it will download+install it (etc.). There is also <a href="http://www.r-statistics.com/2015/06/a-step-by-step-screenshots-tutorial-for-upgrading-r-on-windows/" target="_blank">a&nbsp;step by step tutorial (with screenshots) on how to upgrade R on Windows, using the <em>installr</em></a>&nbsp;package. If you only see the option to upgrade to an older version of R, then change your mirror or try again in a few hours (it usually take around 24 hours for all CRAN mirrors to get the latest version of R).</span></p><p><em>I try to keep the <a href="https://github.com/talgalili/installr" target="_blank">installr</a> package updated and useful, so if you have any suggestions or remarks on the package &ndash; you are invited to <a href="https://github.com/talgalili/installr/issues" target="_blank">open an issue in the github page</a>.</em></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/27250/lawley-lab</guid>
  <pubDate>Mon, 09 May 2016 03:29:51 -0500</pubDate>
  <link></link>
  <title><![CDATA[Lawley Lab]]></title>
  <description><![CDATA[
<p>Lawley Lab are covered with a complex microbial community, known as our microbiota, which plays important roles in our physiology, immunity, metabolism and sustenance. Within the human gastrointestinal tract alone there are over 1,000 bacterial species, which amounts to approximately 10 times more cells than we harbor in our entire body and 200 times more genes than are found within our genome. Lawley Lab are really a 'supraorganism' consisting of our 'human' and 'microbial' selves.</p>

<p>More at http://www.sanger.ac.uk/science/groups/lawley-lab</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/27311/release-notes-for-genome-workbench-2105</guid>
	<pubDate>Thu, 12 May 2016 13:49:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/27311/release-notes-for-genome-workbench-2105</link>
	<title><![CDATA[Release Notes for Genome Workbench 2.10.5]]></title>
	<description><![CDATA[<p>New Features in latest release</p><ul>
<li>New ProSplign tool integrated with Genome Workbench (<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial13">Tutorial</a>,&nbsp;<a href="https://www.youtube.com/watch?v=V9UqKJprzAg&amp;feature=youtu.be" target="_blank">Video</a>)</li>
<li>New export function for BAM/cSRA coverage graphs (<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial14">Tutorial</a>)</li>
<li>New export function for alignments GFF3 format ((<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial15">Tutorial</a>))</li>
<li>Tree View: implemented new export mode based on selections (tutorial coming)</li>
<li>Tree View: added support for&nbsp;<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial3/#distance_based_circular_trees">distance based circular trees</a></li>
<li>Tree View: new rooting mode (Midpoint Root) results in more balanced trees (<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial3#reroot_tree">Tutorial</a>)</li>
<li>Tree View: added possibility to right-click on an edge between two nodes and "Place Root at Middle of Branch" &ndash; to re-root at mid-branch (<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial3#reroot_tree">Tutorial</a>)</li>
</ul>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/27412/navin-lab</guid>
  <pubDate>Wed, 18 May 2016 16:40:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[Navin Lab]]></title>
  <description><![CDATA[
<p>NAvin laboratory has pioneered the development of single cell sequencing technologies.  They apply these tools to study complex biological processes that occur in human cancers including tumor initation, clonal evolution, invasion, metastasis and chemoresistance.  These processes have previously been difficult to study with genomic technologies using bulk tissues</p>

<p>More at http://www.navinlab.com/navinlab/home.html</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27453/senior-project-fellow-bioinformatics-at-nbri</guid>
  <pubDate>Sat, 21 May 2016 21:01:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Project Fellow Bioinformatics at NBRI]]></title>
  <description><![CDATA[
<p>Walk In Interview No. 03/Project/2016<br />Senior Project Fellow Bioinformatics Job vacancies in CSIR- National Botanical Research Institute (NBRI), Lucknow<br />Area III: Molecular Biology &amp; Biotechnology<br />Qualification : 1st Class M.Sc. in Bioinformatics/Biotechnology/ Life Science /Biochemistry/Botany with 2 years research experience and at least one publication in SCI Journal or 1st class M.Tech in Bioinformatics<br />Age : 32 years<br />Salary : Rs.18000<br />How to apply<br />Date &amp; Venue of Interview For Area III: 27-05-2016 at 11.00 A.M. at Conference Room, T.N. Khushoo Block, NBRI, Lucknow.</p>

<p>http://www.nbri.res.in/temp.php</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27477/cytoscape</guid>
	<pubDate>Mon, 23 May 2016 02:32:00 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27477/cytoscape</link>
	<title><![CDATA[Cytoscape]]></title>
	<description><![CDATA[<p>Cytoscape is an <a href="http://www.cytoscape.org/download.php">open source</a> software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of <a href="http://apps.cytoscape.org/"><em>Apps</em></a> are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.</p><p>Address of the bookmark: <a href="http://www.cytoscape.org/" rel="nofollow">http://www.cytoscape.org/</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27549/ra-at-university-of-hyderabad</guid>
  <pubDate>Sun, 29 May 2016 11:50:37 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA at UNIVERSITY OF HYDERABAD]]></title>
  <description><![CDATA[
<p>UNIVERSITY OF HYDERABAD</p>

<p>School of Life Sciences</p>

<p>Department of Animal Biology</p>

<p>Applications are invited on a plane paper (along with copies of educational qualifications and experience) from eligible candidates for the selection of following position to work under a collaborative research project entitled “Development and application of high resolution genome conformation capture technology to investigate genome architecture in space and time” between University of Hyderabad and CR Rao advanced Institute of Mathematics, Statistics and Computer Sciences, sponsored by Department of Biotechnology, Government of India, New Delhi</p>

<p>Name and No. of positions JRF‐ONE</p>

<p>Emoluments for the position Rs. 25,000/p.m. + Eligible HRA</p>

<p>Qualifications MSc or M.Tech in any branch of biology/bioinformatics/computational biology/computer sciences/Mathematics/Physics</p>

<p>Duration Appointments are made initially for ONE year and can be extended further TWO years or until the duration of project</p>

<p>Our laboratory is interested in understanding signalling and spatiotemporal dynamics of 3‐Dimensional genome architecture and gene expression during embryonic stem cell differentiation by utilizing a combination of cellular, molecular genetics, Biochemical and computational tools in combination with next generation sequencing based chromatin structure analysing methods. Successful candidates shall pursue project related to either experimental or computational analysis of genome and Epigenomics data derived from human and mouse cells. Experience in Computational biology, bioinformatics, statistics, machine learning and algorithmic development is required. Knowledge of programming languages (e.g. C, C++, Perl, Python, Ruby etc.) and statistical framework (e.g. R, matlab, etc.) is preferable. Basic understanding of molecular biology will be an added advantage.</p>

<p>Interested candidates with the above mentioned qualification can send their curriculum vitae to   Dr. K. Sreenivasulu, Department of Animal Biology, School of Life Sciences, South campus, University of Hyderabad or via email at positionssklab@gmail.com or svksl@uohyd.ernet.in.</p>

<p>Candidates with CSIR/UGC/ICMR/DBT/BINC qualifications if interested in above mentioned area of research are welcomed to approch principal investigator for a position leading to PhD. Last date for submission of applications is 17/06/2016. Eligible candidates will be called for an interview and they should carry all original certificates of the qualifying exam. No TA/ DA will be paid for attending the interview or at the time of joining the post.</p>

<p>Advertisement: http://www.uohyd.ac.in/images/recruitment/jrf_260516.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27691/histonedb-20-%E2%80%93-with-variants</guid>
	<pubDate>Fri, 03 Jun 2016 05:06:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27691/histonedb-20-%E2%80%93-with-variants</link>
	<title><![CDATA[HistoneDB 2.0 – with variants]]></title>
	<description><![CDATA[<p><span>This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of nucleosomes. To get started, select a histone type to explore its variants.</span></p>
<p><span>More at&nbsp;http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/</span></p><p>Address of the bookmark: <a href="http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/" rel="nofollow">http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/27713/mutabind</guid>
	<pubDate>Mon, 06 Jun 2016 13:34:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/27713/mutabind</link>
	<title><![CDATA[MutaBind]]></title>
	<description><![CDATA[<p><span>MutaBind is a new computational method and server created through NCBI research efforts that maps mutations on a protein structural complex, calculates changes in binding affinity, identifies deleterious mutations and produces a downloadable mutant structural model.&nbsp;</span><a href="http://www.ncbi.nlm.nih.gov/projects/mutabind/index.fcgi/" target="_blank">http://www.ncbi.nlm.nih.gov/projects/mutabind/index.fcgi/</a></p><p><img src="http://www.ncbi.nlm.nih.gov/projects/mutabind/prj-sunddg/static/myimgs/CirclesDiamondBlueThiner.png" width="471" height="258" alt="image" style="border: 0px;"></p><p><span>MutaBind guides you through this process, step by step, starting with selecting a protein complex and inputting PDB code or uploading PDB files. You can also retrieve results with a job ID number, view help documents, and review the MutaBind method and references.</span></p><p><span>More at&nbsp;http://www.ncbi.nlm.nih.gov/projects/mutabind/index.fcgi/</span></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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