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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/32709?offset=740</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/27455/blosum50-matrix</guid>
	<pubDate>Sat, 21 May 2016 22:12:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/27455/blosum50-matrix</link>
	<title><![CDATA[BLOSUM50 Matrix]]></title>
	<description><![CDATA[]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/27455" length="2088" type="text/x-fortran" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27479/biogps</guid>
	<pubDate>Mon, 23 May 2016 03:15:46 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27479/biogps</link>
	<title><![CDATA[BioGPS]]></title>
	<description><![CDATA[<p>A free&nbsp;<em>extensible</em>&nbsp;and&nbsp;<em>customizable</em>&nbsp;<strong>gene annotation portal</strong>, a complete resource for learning about&nbsp;<strong>gene and protein function</strong>.</p>
<p>http://biogps.org/#goto=welcome</p><p>Address of the bookmark: <a href="http://biogps.org/#goto=welcome" rel="nofollow">http://biogps.org/#goto=welcome</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27679/cluego</guid>
	<pubDate>Thu, 02 Jun 2016 09:51:44 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27679/cluego</link>
	<title><![CDATA[ClueGO]]></title>
	<description><![CDATA[<p>ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.</p><p>Address of the bookmark: <a href="http://www.ici.upmc.fr/cluego/" rel="nofollow">http://www.ici.upmc.fr/cluego/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28879/projects-opening-at-nbagr</guid>
  <pubDate>Wed, 24 Aug 2016 04:13:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[Projects opening at NBAGR]]></title>
  <description><![CDATA[
<p>ICAR - NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES</p>

<p>Karnal -132001 (Haryana)</p>

<p>A walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal (Haryana)-132001 at 10:30 AM on 05.09.2016 for the selection of Three Research Associate &amp; One Young Professional - II as per details given below:</p>

<p>Name of the Scheme / Project: Center for Agricultural Bioinformatics. The post duration is Upto 31.032017 or earlier &amp; Co-terminus with the project.</p>

<p>Research Associate (Three posts)</p>

<p>Date &amp; Time of Interview: 10.30 A.M. on 05.09.2016</p>

<p>Essential Qualifications: PhD degree in any one of discipline/Subject Biotechnology/ Animal Genetics and Breeding/ Biochemistry/ Bioinformatics/Molecular Genetics OR Master’s degree in any one of above mentioned discipline/Subject with 4 years/5 years of Bachelor’s degree having 1st division or 60% marks or equivalent overall grade point average, with at least two years of research experience as evidenced from Fellowship/Associateship</p>

<p>Desirable Qualifications: Experience in Database/Next Generation Sequencing Data analysis for 02 RA posts or working experience in molecular biology, gene expression data analysis, SNP genotyping and sequence data analysis, functional gene characterization for 01 RA post.</p>

<p>Young Professionals II One position</p>

<p>Date &amp; Time of Interview: 10.30 A.M. on 05.09.2016</p>

<p>Essential: B. Tech or M.Tech. in Bioinformatics / Computer Science / Computer Application.</p>

<p>Desirable: Experience in Linux, MySQL, Java, C++/ PHP/ PERL R based data analysis and application development in Bioinformatics.</p>

<p>More Info : http://14.139.252.116/ADvertisementforCabinScheme.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27945/srf-project-assistant-bioinformatics-at-nirrh</guid>
  <pubDate>Sun, 19 Jun 2016 09:11:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF/ Project Assistant Bioinformatics at NIRRH]]></title>
  <description><![CDATA[
<p>SRF/ Project Assistant Bioinformatics recruitment in National Institute for Research in Reproductive Health (NIRRH)</p>

<p>Title of Project : 1. “Analysis Of The Structures Of Known Antimicrobial Peptides Using Machine Learning Algoitms And Molecular Dynamics Simulations”</p>

<p>Senior Research Fellow /1 Post</p>

<p>Qualification: First class M.Sc. in Bioinformatics/ Biological Sciences from recognized university with 2 years research experience and CSIR/UGC/ICMR net qualified OR First class M.Sc. in Bioinformatics/ Biological Sciences from recognized university with 2 years research experience Research experience in bioinformatics and wetlab methods. </p>

<p>Age: Not exceeding 35 Years</p>

<p>Pay Scale : Rs.18,000/- + 30% HRA Rs.14,000/- + 30% HRA </p>

<p>Project Assistant (Level-II) /1 Post</p>

<p>Qualification:  First class M.Sc. in Bioinformatics/ Biological Sciences/Computer Sciences Training experience in bioinformatics and wetlab methods .</p>

<p>Age: Not exceeding 28 Years </p>

<p>Pay Scale : Rs.8,000<br />How to apply<br />Candidates must bring along with them all the relevant documents in original and one set of attested photocopies of the same and one passport size recent colour photograph. </p>

<p>Walk-in-Interview on 28.06.2016 between 09:00 hrs. to 12:00 hrs.</p>

<p>More at http://www.nirrh.res.in/links/job_oppotunities.htm</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/28141/csbb-v10</guid>
	<pubDate>Wed, 29 Jun 2016 07:33:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/28141/csbb-v10</link>
	<title><![CDATA[CSBB-v1.0]]></title>
	<description><![CDATA[<p>CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R and python in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX, MAC OS and Windows platforms.</p>
<p>Currently CSBB provides 13 modules focused on analytical tasks like performing upper-quantile normalization on expression data or convert genome wide gene expression to z-scores when comparing expression data from different platforms.</p>
<p>More at&nbsp;https://github.com/skygenomics/CSBB-v1.0</p><p>Address of the bookmark: <a href="https://github.com/skygenomics/CSBB-v1.0" rel="nofollow">https://github.com/skygenomics/CSBB-v1.0</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28425/advertisement-for-junior-research-fellowjrf-at-school-of-computational-and-integrative-sciences-jawaharlal-nehru-university</guid>
  <pubDate>Thu, 14 Jul 2016 07:24:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Advertisement for Junior Research Fellow(JRF)  at School of Computational and Integrative Sciences  Jawaharlal Nehru University]]></title>
  <description><![CDATA[
<p>Advertisement for Junior Research Fellow(JRF) - (1)</p>

<p>Applications are invited for a post in DST, India funded Project entitled: "Positive and negative impacts of macromolecular crowding agents during target site location by DNA binding proteins – origin of optimal search at physiological ionic concentration (Reference Number: ECR/2016/000188) ''. The selected candidate will be appointed purely on temporary basis, initially for two years as a JRF that may be extended to one year of SRF based on the performance.</p>

<p>Position: Junior Research Fellow (1)</p>

<p>Qualifications &amp; Experience: Candidate must have a consistently good academic record with at least 60% marks in all throughout and must have qualified NET/GATE.</p>

<p>Desirable: Basic knowledge in the field of biophysics, molecular simulations and computational biology are desirable.</p>

<p>Salary: Consolidated Rs. 25,000 per month.</p>

<p>Tenure: The project duration is for three years and the selected candidate would be appointed after an interview. Appointment will be purely on temporary basis as stipulated by the existing rules of the University.</p>

<p>Interested candidates need to send an application to the address mentioned below mentioning the name of the project and post applied for (on the cover of the envelope).</p>

<p>The applications along with CV should be mailed at the address given below. Name, address, contact number and e. mail address of two referees must be enclosed with the application. The last date for the application is July 31st 2016.</p>

<p>Dr. Arnab Bhattacharjee (Principal Investigator) <br />Assistant Professor <br />School of Computational and Integrative Sciences <br />Jawaharlal Nehru University <br />New Delhi-110067 <br />E-mail: arnab@jnu.ac.in</p>

<p>Note: 1. Only shortlisted candidates will be communicated to appear in the interview at SCIS, JNU and no other communications in this regard will be entertained.</p>

<p>2. No TA/DA will be paid for appearing in interview.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34718/dipspades-assembler-for-highly-polymorphic-diploid-genomes</guid>
	<pubDate>Wed, 20 Dec 2017 18:35:16 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34718/dipspades-assembler-for-highly-polymorphic-diploid-genomes</link>
	<title><![CDATA[dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.]]></title>
	<description><![CDATA[<p><span>While the number of sequenced diploid genomes have been steadily increasing in the last few years, assembly of highly polymorphic (HP) diploid genomes remains challenging. As a result, there is a shortage of tools for assembling HP genomes from the next generation sequencing (NGS) data. The initial approaches to assembling HP genomes were proposed in the pre-NGS era and are not well suited for NGS projects. To address this limitation, we developed the first de Bruijn graph assembler, dipSPAdes, for HP genomes that significantly improves on the state-of-the-art assemblers for HP diploid genomes.</span></p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/pubmed/25734602" rel="nofollow">https://www.ncbi.nlm.nih.gov/pubmed/25734602</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28547/jrf-bioinformatics-at-iit-delhi</guid>
  <pubDate>Mon, 25 Jul 2016 03:26:20 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at IIT, Delhi]]></title>
  <description><![CDATA[
<p>No. IITD/IRD/RP03017/4254/Advertisement No.: IITD/IRD/093/2016<br />JRF Bioinformatics  job vacancies in Indian Institute of Technology Delhi (IIT Delhi)<br />Title : Elucidation of Pathologically Relevant miRNAs Responsible for Disease Progression and Resistance to Chemotherapy in Chronic Lymphocytic Leukemia (CLL) (RP03017)<br />Qualification : Candidates having first class B. Tech. / M.Sc. Degree or equivalent in Bioinformatics or Biotechnology with NET qualification. Desirable: Candidates having computer programming skills (C++, Python, Java, Web designing using Materialize frameworks, database management, offline software GUI development) with knowledge of Linux server environment and / or experience in next generation sequencing (NGS) data analysis, MD simulations will be preferred.<br />No. of Post : 01<br />Pay Scale : Rs.25,000/-<br />How to apply<br />Walk-in test / interview will be held on 04/08/2016, 03.00 p.m. at Committee Room No. 230, Block-I, Department of Biochemical Engineering &amp; Biotechnology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi-110016.</p>

<p>More at http://ird.iitd.ac.in/sites/default/files/jobs/project/IITD-IRD-093-2016.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/28566/emboss-apps</guid>
	<pubDate>Wed, 27 Jul 2016 06:00:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/28566/emboss-apps</link>
	<title><![CDATA[EMBOSS Apps]]></title>
	<description><![CDATA[<p>The programs are listed in alphabetical order, Look at the individual applications or go to the&nbsp;<a href="http://emboss.sourceforge.net/apps/release/6.6/emboss/apps/groups.html">GROUPS</a>&nbsp;page to search by category.</p>
<p><a href="http://emboss.sourceforge.net/apps/release/6.6/embassy/index.html">EMBASSY applications</a>&nbsp;are described in separate documentation for each package.</p>
<h3><a name="current" id="current"></a>Applications&nbsp;in the&nbsp;<a href="ftp://emboss.open-bio.org/pub/EMBOSS/">current release</a></h3><p>Address of the bookmark: <a href="http://emboss.sourceforge.net/apps/release/6.6/emboss/apps/" rel="nofollow">http://emboss.sourceforge.net/apps/release/6.6/emboss/apps/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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