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	<link>https://bioinformaticsonline.com/related/32719?offset=1380</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27211/srbioinformatics-analyst-ngs-ocimumbio</guid>
  <pubDate>Mon, 02 May 2016 04:41:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Sr.Bioinformatics Analyst (NGS) @ OcimumBio]]></title>
  <description><![CDATA[
<p>Sr.Bioinformatics Analyst (NGS)</p>

<p>Experience Required: 3-5 years of experience<br />No of Positions : Multiple<br />Qualifications: Candidates with minimum qualification as M.Sc Bioinformatics with 3-5  years of experience in Life sciences R&amp;D or Pharma Industry.<br />Ph.D candidates with research experience in Bioinformatics with publications in International journal and minimum 2 years of  industry experience in clinical genomics will be preferred for this position.</p>

<p>Requirement:</p>

<p>1.  Must have basic understanding of molecular biology and Genomics.<br />2. Experience in application development or must have expertise in programming using either of Perl/Python.<br />3.  Experience in statistical programming using R/Bioconductor/Matlab.<br />4. Strong concept in statistical and mathematical modelling.<br />5.  Experience in designing and developing the bioinformatics pipeline.<br />6.  Must have minimum 2+ years of hands on experience in NSG data analysis such as RNA-Seq,Exome-Seq ,Chip-Seq and downstream analysis.<br />7. Knowledge in WGS ,WES, Targeted re-sequencing,GWAS and population genomics will be preferred.<br />8. Must have experience working on opensource software/Framework and commercial software for NGS data analysis and reporting.<br />9. Should be aware of handling big data and guiding team members on multiple projects simultaneously.<br />More at http://www.ocimumbio.com/careers1/<br />10. Should have experience coordinating with different groups of clinical research scientist for various project requirements.<br />11. Ability to work as team as well as independently with minimal support.</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27274/bioinformatics-national-certification-binc-examination-2016</guid>
  <pubDate>Wed, 11 May 2016 02:17:44 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics National Certification (BINC) Examination 2016]]></title>
  <description><![CDATA[
<p>Bioinformatics National Certification (BINC) Examination 2016</p>

<p>Department of Biotechnology, Government of India, New Delhi &amp; Pondicherry University, Puducherry</p>

<p>Starting of online submission of application : April 13, 2016</p>

<p>Last date for submission of application : May 13, 2016</p>

<p>Examination consists of two parts:</p>

<p>Part - I (Paper - I) : June 12, 2016 (10 AM -12 PM)<br />Part - II (Paper • II &amp; III) : June 26, 2016 (9 AM • 12 PM &amp; 2 PM • 4 PM)</p>

<p>Objective: Pondicherry University, on behalf of the Department of Biotechnology (DBT),<br />Government of India, will conduct the Bioinformatics National Certification (BING) examination. The objective of this examination is to identify Bioinformatics professionals<br />for further studies as well as to help potential employers in recruitment of candidates having exceptionally good Bioinformatics skills.</p>

<p>Eligibility : Bachelor degree in Life Sciences, Physical Sciences, Chemical Sciences, Mathematical Sciences, Agriculture, Veterinary, Medicine, Pharmacy, Engineering and Technology are eligible to appear for the examination. They need not have any formal training, diploma or certificate in Bioinformatics.</p>

<p>Application and syllabus : The online application can be filled from April 13, 2016 to May 13, 2016.</p>

<p>Syllabus for the examination is available online.</p>

<p>It consists of five sections:<br />Bioinformatics, Biology, Physical and Chemical Sciences, Mathematics &amp; Statistics and Computer Science &amp; Information Technology.</p>

<p>Examination : The examination fee is Rs. 600/- for general candidates, Rs. 400/- for women/OBC candidates and Rs. 200 for SC/ST candidates, and no fee for physically challenged candidates.</p>

<p>The online Part - I (Paper - I) examination is scheduled on June 12,2016 and Part- II (Paper - II and Paper- III) on June 26, 2016. The Paper- I will be of objective type and candidates scoring a minimum of 40% marks in Paper - I will be called to appear in Part II examination.</p>

<p>Part II examination consists of two papers : The Paper - II will be of short answer type questions of three hours duration while the Paper- III will be a practical examination of two hours duration to test analytical ability and programming skill of candidates.</p>

<p>Research Fellowships for all the successful candidates those who are interested and qualified in pursuing Ph.D. in India will be awarded. In addition, cash prizes will be  awarded to the top 10 successful candidates.</p>

<p>The details of examination centres, other details and submission of application, please<br />visit: http://www.pondiuni.edu.in/exams/binc/</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27238/slurm</guid>
	<pubDate>Wed, 04 May 2016 05:13:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27238/slurm</link>
	<title><![CDATA[SLURM]]></title>
	<description><![CDATA[<p><a href="http://www.schedmd.com/">SLURM</a> workload manager software, a free open-source workload manager designed specifically to satisfy the demanding needs of high performance computing.</p>
<p>This page is a <em>HOWTO</em> guide for setting up a <a href="http://www.schedmd.com/">SLURM</a> installation, currently focused on a CentOS 7 Linux OS. Please send feedback to Ole.H.Nielsen /at/ fysik.dtu.dk.</p>
<p>See the <a href="http://www.schedmd.com/">SLURM</a> homepage (also <a href="https://computing.llnl.gov/linux/slurm/">https://computing.llnl.gov/linux/slurm/</a>).</p><p>Address of the bookmark: <a href="https://wiki.fysik.dtu.dk/niflheim/SLURM" rel="nofollow">https://wiki.fysik.dtu.dk/niflheim/SLURM</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27290/scientists-post-at-monsanto</guid>
  <pubDate>Wed, 11 May 2016 07:58:44 -0500</pubDate>
  <link></link>
  <title><![CDATA[Scientists post at Monsanto]]></title>
  <description><![CDATA[
<p>Sustainable agriculture is at the core of Monsanto. We develop technologies that enable farmers to produce more crops while conserving natural resources. Monsanto scientists are conducting research and development (R&amp;D) to revolutionize plant breeding and biotechnology.</p>

<p>Monsanto is seeking a very talented Genomics Scientistto become an integral member of our Global Pipeline Analytics team with a focus on quantitative genetics. The ideal candidate will have familiarity with modeling and analysis of genetic data sets using a variety of statistical techniques.</p>

<p>Major Responsibilities:<br />- Provide guidance on experimental design for genomic-related experiments<br />- Familiarity with analysis of the following methods: GWS, QTL, eQTL, RNA-Seq<br />- Provide written and oral presentations of methods, results, conclusions, and recommendations to peer and management groups.<br />- Ensure timely delivery and clear communication of results<br />- Develop strong and successful collaborations among various Monsanto enabling teams.</p>

<p>Required Skills:</p>

<p>- PhD degree in Statistics, Biostatistics, Statistical Genetics, Quantitative Genetics, Breeding, Bioinformatics or a related field with 2 years of experience<br />- Working knowledge and experience with one of the following quantitative languages:R, Python, Perl, SAS<br />- Background in Windows and Linux operating systems<br />- Very strong problem solving skills will be required to work well as a member of a dynamic team<br />- Strong verbal and written communication skills.<br />- Demonstrated ability to deliver timely results and be results oriented.<br />- Extensive knowledge of quantitative genetics and experimental design.&nbsp;<br />- Demonstrated track record of solving challenging and complex problems.</p>

<p>Desired Skills/Experience:</p>

<p>- Excellent communication skills, with the ability to summarize complex concepts in language understandable by scientists from a variety of disciplines.<br />- Experience in agronomy and/or plant breeding in vegetables or row crops.</p>

<p>Please apply to<br />https://jobs.monsanto.com/job/st-louis/genomics-scientist/769/2081771</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/27318/sample-binc-question-paper-2016-part2</guid>
	<pubDate>Fri, 13 May 2016 03:42:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/27318/sample-binc-question-paper-2016-part2</link>
	<title><![CDATA[Sample BINC question paper 2016 - part2]]></title>
	<description><![CDATA[<p>Download the sample question paper for BINC 2016 - paer II</p>]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/27318" length="52024" type="application/pdf" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27333/satsuma-highly-sensitive-whole-genome-synteny-alignments</guid>
	<pubDate>Fri, 13 May 2016 05:25:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27333/satsuma-highly-sensitive-whole-genome-synteny-alignments</link>
	<title><![CDATA[SATSUMA : Highly sensitive whole-genome synteny alignments.]]></title>
	<description><![CDATA[<p>Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does not require any pre-processing, such as repeat masking, since it will automatically detect ambiguous mappings.<br> <br> Satsuma has parallelization built-in and is designed to run on multi-core architectures. The run-time for aligning two bird-size genomes (~1.2 Gb) is around two days on 24 CPUs. <br> <br> You can find the manual <a href="http://satsuma.sourceforge.net/manual.html">here</a>.<br> Download the latest source code from <a href="https://sourceforge.net/projects/satsuma/">here.</a><br> Stable versions can also be downloaded from the <a href="https://www.broadinstitute.org/science/programs/genome-biology/spines">Broad Institute's</a> web site.<br> <br> An incomplete list of questions and answers (yes, these have really been asked by our users! Please feel free to add your own by e-mailing us) is <a href="http://satsuma.sourceforge.net/faq.html">here</a>.<br> <br> If you use Satsuma in your research, please cite:<br> <a href="http://bioinformatics.oxfordjournals.org/content/26/9/1145.long">Grabherr, M. G., Russell, P., Meyer, M., Mauceli, E., Alf&ouml;ldi, J., Di Palma, F., &amp; Lindblad-Toh, K. (2010). Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinformatics, 26(9), 1145-51</a>.</p>
<p><strong>Tutorial at http://evomics.org/learning/genomics/satsuma/</strong></p><p>Address of the bookmark: <a href="http://satsuma.sourceforge.net/" rel="nofollow">http://satsuma.sourceforge.net/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/27455/blosum50-matrix</guid>
	<pubDate>Sat, 21 May 2016 22:12:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/27455/blosum50-matrix</link>
	<title><![CDATA[BLOSUM50 Matrix]]></title>
	<description><![CDATA[]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/27455" length="2088" type="text/x-fortran" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27479/biogps</guid>
	<pubDate>Mon, 23 May 2016 03:15:46 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27479/biogps</link>
	<title><![CDATA[BioGPS]]></title>
	<description><![CDATA[<p>A free&nbsp;<em>extensible</em>&nbsp;and&nbsp;<em>customizable</em>&nbsp;<strong>gene annotation portal</strong>, a complete resource for learning about&nbsp;<strong>gene and protein function</strong>.</p>
<p>http://biogps.org/#goto=welcome</p><p>Address of the bookmark: <a href="http://biogps.org/#goto=welcome" rel="nofollow">http://biogps.org/#goto=welcome</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34922/camsa-a-tool-for-comparative-analysis-and-merging-of-scaffold-assemblies</guid>
	<pubDate>Thu, 28 Dec 2017 09:10:26 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34922/camsa-a-tool-for-comparative-analysis-and-merging-of-scaffold-assemblies</link>
	<title><![CDATA[CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies]]></title>
	<description><![CDATA[<p>CAMSA &ndash; is a tool for&nbsp;<span>C</span>omparative&nbsp;<span>A</span>nalysis and&nbsp;<span>M</span>erging of&nbsp;<span>S</span>caffold&nbsp;<span>A</span>ssemblies, distributed both as a standalone software package and as Python library under the MIT license.</p>
<p>Main features:</p>
<ol>
<li>works with any number of scaffold assemblies in de-novo non-progressive fashion</li>
<li>allows to simultaneously work with scaffold assemblies obtained from any&nbsp;<em>in silico</em>&nbsp;and&nbsp;<em>in vitro</em>&nbsp;techniques, supporting multiple existing formats via built-in converters</li>
<li>creates an extensive report with several comparative quality metrics (both on assembly level and on the level of individual assembly points)</li>
<li>constructs a merged combined scaffold assembly</li>
<li>provides an interactive framework for a visual comparative analysis of the given assemblies</li>
</ol><p>Address of the bookmark: <a href="https://cblab.org/camsa/" rel="nofollow">https://cblab.org/camsa/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27679/cluego</guid>
	<pubDate>Thu, 02 Jun 2016 09:51:44 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27679/cluego</link>
	<title><![CDATA[ClueGO]]></title>
	<description><![CDATA[<p>ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.</p><p>Address of the bookmark: <a href="http://www.ici.upmc.fr/cluego/" rel="nofollow">http://www.ici.upmc.fr/cluego/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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