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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/32849?offset=300</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/8330/atlas-of-ancient-inter-ethnic-group</guid>
	<pubDate>Fri, 14 Feb 2014 13:16:20 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/8330/atlas-of-ancient-inter-ethnic-group</link>
	<title><![CDATA[Atlas of ancient inter-ethnic group !!!]]></title>
	<description><![CDATA[<p>Now a dayz, almost 3% of the world's population lived outside their country of origin. These migration is increasingly being perceived as a force that can contribute to development, and an integral aspect of the global development process.&nbsp; While migrants make important contributions to the economic prosperity of their host countries, the flow of financial, technological, social and human capital back to their countries of origin also is having a significant impact on poverty reduction and economic development.</p><p>However, the ancient invasions and migrations to slavery and trade, history is embroidered with events that led to interactions between previously separate populations. Early humans migrated due to many factors such as changing climate and landscape and inadequate food supply. Historical migration of human populations begins with the movement of Homo erectus out of Africa across Eurasia about a million years ago. Homo sapiens appear to have occupied all of Africa about 150,000 years ago, moved out of Africa 70,000 years ago, and had spread across Australia, Asia and Europe by 40,000 years BC. Indo-Aryan migration from the Indus Valley to the plain of the River Ganges in Northern India is presumed to have taken place in the Middle to Late Bronze Age, contemporary to the Late Harappan phase in India (ca. 1700 to 1300 BC). From 180 BC, a series of invasions from Central Asia followed, including those led by the Indo-Greeks, Indo-Scythians, Indo-Parthians and Kushans in the northwestern Indian subcontinent.</p><p><img src="http://upload.wikimedia.org/wikipedia/commons/3/37/Map-of-human-migrations.jpg" alt="image" style="border: 0px; border: 0px;"></p><p>Using the recent advance technologies researchers have created a historical atlas of instances of such mixing. They use a sophisticated statistical method for making inferences about human history and&nbsp;infer populations interbredings ( happen over the past 4,000 years) with an ease.<br /><br />The study published the findings and presented with an interactive map. http://admixturemap.paintmychromosomes.com/</p><p>These sort of genomic study have some limilation. It is hard to precisely define sources of mixing when it occurred between genetically similar groups, and scenarios involving multiple waves of mixing over time or between multiple groups can be difficult to tease apart. But it is believed that larger sample sizes will improve resolution. These high resolution will provide a deeper understanding of human history.</p><p>Reference:</p><p>http://www.sciencemag.org/content/early/2014/01/28/science.1245938</p><p>http://www.ncbi.nlm.nih.gov/pubmed/21390129?dopt=Abstract&amp;holding=npg</p><p>http://www.csulb.edu/~kmacd/paper-ethnicity.html</p><p>Image: Wikipedia</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37618/snakemake%E2%80%94a-scalable-bioinformatics-workflow-engine</guid>
	<pubDate>Sun, 02 Sep 2018 16:32:42 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37618/snakemake%E2%80%94a-scalable-bioinformatics-workflow-engine</link>
	<title><![CDATA[Snakemake—a scalable bioinformatics workflow engine]]></title>
	<description><![CDATA[<p><span>Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow.&nbsp;</span></p><p>Address of the bookmark: <a href="https://bioconda.github.io/recipes/snakemake/README.html" rel="nofollow">https://bioconda.github.io/recipes/snakemake/README.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/9055/computational-biologist-scientist-strand-life-sciences</guid>
  <pubDate>Fri, 14 Mar 2014 11:36:56 -0500</pubDate>
  <link></link>
  <title><![CDATA[Computational Biologist Scientist @ Strand Life Sciences]]></title>
  <description><![CDATA[
<p>We are looking for a motivated application scientist to help evaluate, compare, and develop next generation sequencing (NGS) data analysis methods. The successful candidate should be able to quickly understand the state-of-art computational biology techniques, prototype them and perform benchmarking studies. The candidate must also be comfortable working with people from different disciplines and be able to present data analysis results in a clear and effective manner. The candidate is also expected to interact with customers as needed, write technical reports and publish new methods and/or data analysis findings in public forums.</p>

<p>Candidate Requirements: A PhD in computer science, computational biology, Bioinformatics, or a related field, along with sufficient programming skills for prototyping. Experience with next generation sequencing data analysis is required. Candidates with MS degree but with relevant work experience can also be considered. The successful candidate must be motivated and capable of working independently as well as in team environment.</p>

<p>Eligible and interested candidates can email your resumes to rohit at strandls dot com</p>

<p>About Strand Life Sciences: Strand was founded in 2000 by computer science and mathematics professors who recognized the need to automate and integrate life science data analysis through an algorithmic and computational approach. Strand’s solutions for life sciences research are robust and easy to use by the most novice user while powerful and configurable for the bioinformatician. Using its award-winning application development platform, AVADIS®, Strand builds innovative products that enable fast and cutting-edge analysis for basic and clinical research, drug discovery and development.</p>

<p>http://www.avadis-ngs.com/careers</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/39469/introduction-to-bioinformatics</guid>
	<pubDate>Wed, 05 Jun 2019 14:58:11 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/39469/introduction-to-bioinformatics</link>
	<title><![CDATA[Introduction to Bioinformatics]]></title>
	<description><![CDATA[<p><img src="https://edu.t-bio.info/wp-content/uploads/2017/07/Introduction-Course-Title-11.jpg" alt="Introduction to Bioinformatics Course" width="600" height="315.6" style="vertical-align: top; border: 0px; border: 0px;"></p><p>Introduction to bioinformatics is a course for biologists and clinicians that would like to learn more about the way bioinformatics is used in healthcare, biotech and pharmaceuitcal industry as well as basic research. The course covers many of the topics transformed by the emergence of big data and computational technologies. To learn more about the course, visit:&nbsp;<a href="https://edu.t-bio.info/course/introduction-bioinformatics/">https://edu.t-bio.info/course/introduction-bioinformatics/</a></p>]]></description>
	<dc:creator>eliabrodsky</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/39612/bioclues-and-pine-biotech-join-forces-to-advance-bioinformatics-in-india</guid>
	<pubDate>Fri, 14 Jun 2019 10:20:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/39612/bioclues-and-pine-biotech-join-forces-to-advance-bioinformatics-in-india</link>
	<title><![CDATA[Bioclues and Pine Biotech join forces to advance Bioinformatics in India]]></title>
	<description><![CDATA[<p><img src="https://edu.t-bio.info/wp-content/uploads/2019/06/PineBio-Bioclues.jpg" alt="Bioclues and Pine Biotech join forces" width="1280" height="720" style="border: 0px; border: 0px;">&nbsp;As a collaborative effort, the two organizations will help implement best practices in bioinformatics education across universities in Inida that have little to no experience in bioinformatics. The collaboration comes as Pine Biotech starts registrations for it's pilot program at Amity University in Kolkata, India.</p><p>To read more about this collaboration, visit:&nbsp;https://edu.t-bio.info/pine-biotech-joins-forces-with-the-bioclues-organization-to-promote-bioinformatics/</p>]]></description>
	<dc:creator>eliabrodsky</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/9039/postdoc-position-in-computational-biology</guid>
  <pubDate>Fri, 14 Mar 2014 01:38:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoc Position in Computational Biology]]></title>
  <description><![CDATA[
<p>The Computational Biology Group of Interdisciplinary Center for<br />Clinical Research (IZKF) Aachen, RWTH Aachen University Hospital,<br />Aachen, invites applicants for PhD candidate or postdoctoral position<br />in computational biology in one of the following topics:</p>

<p>1) Statistical machine learning methods for the analysis of medical<br />epigenomics data.</p>

<p>2) Sequence analysis algorithms for detection of RNA-DNA interactions.</p>

<p>Applicants should hold a M.Sc . or PhD in Computer Science or related<br />areas. Experience in the analysis of biological sequences, gene<br />expression and gene regulation is desirable. The candidate should have<br />solid programming skills (C, Python and/or R) and acquaintance with<br />Linux. Experience with high performance computing is a plus. The<br />working language of the group is English.</p>

<p>The position is based on the German TV-L 13 salary scale, including<br />all German social benefits (health insurance and pension scheme). The<br />expected starting date is September 2014. Interested candidates should<br />send a CV, statement of research interests and the names of three<br />references to jobs@costalab.org.</p>

<p>More at http://costalab.org/wp/phd-and-postdoc-position-in-computational-biology/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/fun/view/9207/biogeek-fun</guid>
	<pubDate>Sun, 16 Mar 2014 06:33:31 -0500</pubDate>
	<link>https://bioinformaticsonline.com/fun/view/9207/biogeek-fun</link>
	<title><![CDATA[BioGeek Fun]]></title>
	<description><![CDATA[<p>1. A futuristic computational biology student was told to write "It is in my gene!!!" on the board 100 times as a punishment. here's his response -<br /><br />use warnings;<br />for ($count=1; $count &lt;=100; $count++) { print "It is in my gene!!!";}<br /><br />I guess, he is gonna to be a real biogeek. Nice try though. Smart kid.</p><p>&nbsp;</p><p>2. In some perl script I found this <br />&nbsp;. . . . . .<br />&nbsp;. . . . . .<br /># It works for me, only God understood how it is working<br />while (/(&lt;\/[^&gt;]+&gt;)|(&lt;[^&gt;]+&gt;)|(&lt;[^&gt;]+&gt;)$|([^&gt;&lt;]+)/go) {<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; $startGene=$1;<br />&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; $beginChromosome=$2;<br />&nbsp;&nbsp; &nbsp;<br />. . . . . .<br />&nbsp;.. . . . . .<br />}</p><p>&nbsp;</p><p>3. One more interesting message in Perl found &hellip;. It will must tickle you bone :) <br />open(my $fh, "&lt;", "gene.txt")&nbsp;&nbsp; &nbsp;or kill " Me if you think this is a mistake :$!";<br /><br /></p><p>&nbsp;</p><p>4. From the Perl <br /><br />&nbsp; while () {&nbsp; # "The Mothership Connection is here!"<br />&nbsp;&nbsp; &nbsp;print &ldquo;$_\n&rdquo;; # Printing the offspring :)</p><p>&nbsp;</p><p>5. Perl message<br />if ($1) { print &ldquo;Just found a the error in chromosome !!!, yahoo&hellip;&rdquo;; else { &ldquo;That is not error, but mutation you moron!&rdquo;;</p><p>&nbsp;</p><p>6. One genome database curator walk in wine bar asked the bartender:<br />CREATE TABLE gene IF NOT EXISTS SexOnTheBeach;</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41202/biocontainers</guid>
	<pubDate>Thu, 20 Feb 2020 05:29:46 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41202/biocontainers</link>
	<title><![CDATA[BioContainers]]></title>
	<description><![CDATA[<p><span>BioContainers is a community-driven project that provides the infrastructure and basic guidelines to create, manage and distribute bioinformatics packages (e.g conda) and containers (e.g docker, singularity). BioContainers is based on the popular frameworks&nbsp;</span><a href="https://conda.io/">Conda</a><span>,&nbsp;</span><a href="https://www.docker.com/">Docker</a><span>&nbsp;and&nbsp;</span><a href="https://www.sylabs.io/docs/">Singularity</a><span>.</span></p><p>Address of the bookmark: <a href="https://biocontainers.pro/#/" rel="nofollow">https://biocontainers.pro/#/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/9327/jarvis%E2%80%99-laboratory</guid>
  <pubDate>Tue, 18 Mar 2014 18:53:47 -0500</pubDate>
  <link></link>
  <title><![CDATA[Jarvis’ laboratory]]></title>
  <description><![CDATA[
<p>Dr. Jarvis’ laboratory studies the neurobiology of vocal communication. We want to know how the brain generates, perceives, and learns behavior. We use vocal communication as a model behavior. Emphasis is placed on the molecular pathways involved in the perception and production of learned vocalizations. We use an integrative approach that combines behavioral, anatomical, electrophysiological, and molecular biological techniques. The main animal model used is songbirds, one of the few vertebrate groups that evolved the ability to learn vocalizations. The overall goal of the research is to advance knowledge of the neural mechanisms for vocal learning and basic mechanisms of brain function.</p>

<p>Lab page: http://jarvislab.net/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42236/bioinformatics-focused-postdoctoral-fellow</guid>
  <pubDate>Fri, 23 Oct 2020 05:52:52 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics-focused postdoctoral fellow]]></title>
  <description><![CDATA[
<p>Jason Thomas Ladner currently recruiting for a bioinformatics-focused postdoctoral<br />fellow to join the group at the Pathogen and Microbiome Institute,<br />Northern Arizona University (http://www7.nau.edu/ladnerlab/). This<br />will be a multi-year, NIH-funded position focused on the development and<br />utilization of a novel platform for highly multiplexed antiviral serology,<br />which utilizes high-throughput sequencing technology.</p>

<p>To apply:<br />https://hr.peoplesoft.nau.edu/psp/ph92prta/EMPLOYEE/HRMS/c/HRS_HRAM.HRS_APP_SCHJOB.GBL?Page=HRS_APP_JBPST&amp;Action=U&amp;FOCUS=Applicant&amp;SiteId=1&amp;JobOpeningId=604999&amp;PostingSeq=1</p>

<p>For more information, feel free to contact me: jason.ladner@nau.edu</p>
]]></description>
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