<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/33942?offset=320 https://bioinformaticsonline.com/bookmarks/view/37527/nanopack-visualizing-and-processing-long-read-sequencing-data Fri, 10 Aug 2018 18:41:34 -0500 https://bioinformaticsonline.com/bookmarks/view/37527/nanopack-visualizing-and-processing-long-read-sequencing-data <![CDATA[NanoPack: visualizing and processing long-read sequencing data]]> The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools.

 https://academic.oup.com/bioinformatics/article/34/15/2666/4934939

Address of the bookmark: https://github.com/wdecoster/nanoQC

]]> Jit https://bioinformaticsonline.com/bookmarks/view/40298/environment-for-tree-exploration-ete-is-a-python-programming-toolkit-that-assists-in-the-recontruction-manipulation-analysis-and-visualization-of-phylogenetic-trees Wed, 27 Nov 2019 05:32:33 -0600 https://bioinformaticsonline.com/bookmarks/view/40298/environment-for-tree-exploration-ete-is-a-python-programming-toolkit-that-assists-in-the-recontruction-manipulation-analysis-and-visualization-of-phylogenetic-trees <![CDATA[Environment for Tree Exploration (ETE) is a Python programming toolkit that assists in the recontruction, manipulation, analysis and visualization of phylogenetic trees]]> The Environment for Tree Exploration (ETE) is a Python programming toolkit that assists in the recontruction, manipulation, analysis and visualization of phylogenetic trees (although clustering trees or any other tree-like data structure are also supported).

Other tools

https://github.com/shenwei356/taxonkit

 

Address of the bookmark: https://pypi.org/project/ete3/3.1.1/

]]> Rahul Nayak https://bioinformaticsonline.com/bookmarks/view/44208/circos-visualization Mon, 06 Mar 2023 06:01:32 -0600 https://bioinformaticsonline.com/bookmarks/view/44208/circos-visualization <![CDATA[Circos visualization !]]> Circos visualization

https://wlcb.oit.uci.edu/modules/index.html

Address of the bookmark: https://wlcb.oit.uci.edu/NG-Circos

]]> BioStar https://bioinformaticsonline.com/bookmarks/view/44630/genofig-a-user-friendly-application-for-the-visualization-and-comparison-of-genomic-regions Mon, 05 Aug 2024 23:06:58 -0500 https://bioinformaticsonline.com/bookmarks/view/44630/genofig-a-user-friendly-application-for-the-visualization-and-comparison-of-genomic-regions <![CDATA[GenoFig: a user-friendly application for the visualization and comparison of genomic regions]]> Tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It is an independent recoding of Easyfig 2 initially developped by at the S. Beatson Lab [https://mjsull.github.io/Easyfig/]

Download the GenoFig source code using the 'Download' button on top of this page. Cloning is currently not available for people not member of the INRAE French Institution. After decompression, open a terminal in the folder containing the decompressed files and run:

conda env create -f extras/requirements.yml
extras/SETUP.sh

Address of the bookmark: https://forgemia.inra.fr/public-pgba/genofig

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