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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/34088?offset=80</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40140/alf-a-simulation-framework-for-genome-evolution</guid>
	<pubDate>Tue, 22 Oct 2019 22:05:58 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40140/alf-a-simulation-framework-for-genome-evolution</link>
	<title><![CDATA[ALF--a simulation framework for genome evolution.]]></title>
	<description><![CDATA[<p style="color: #000000; font-size: small; font-style: normal; font-weight: 400; text-align: -webkit-left;"><span style="color: #4d4d4d; font-size: small; font-style: normal; font-weight: 400; text-align: left; background-color: #ffffff; float: none;">Artificial Life Framework (ALF)</span> simulates a root genome into a number of related genomes. Result files include the resulting gene sequences, true tree and true MSAs. A description of ALF can be found in the following article:</p>
<p style="color: #000000; font-size: small; font-style: normal; font-weight: 400; text-align: -webkit-left;">Daniel A Dalquen, Maria Anisimova, Gaston H Gonnet, Christophe Dessimoz: ALF - A Simulation Framework for Genome Evolution.<span>&nbsp;</span><em>Mol Biol Evol</em>, 29(4):1115-1123, April 2012.<br><a href="http://mbe.oxfordjournals.org/content/29/4/1115" target="_blank">http://mbe.oxfordjournals.org/content/29/4/1115</a></p><p>Address of the bookmark: <a href="http://alfsim.org/#index" rel="nofollow">http://alfsim.org/#index</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/43769/ideaslab-workshop</guid>
  <pubDate>Wed, 02 Feb 2022 06:13:48 -0600</pubDate>
  <link></link>
  <title><![CDATA["IdeasLab"* workshop !]]></title>
  <description><![CDATA[
<p>A new, grant-funded opportunity seeks early career researchers interested<br />in life's origins: https://templetonideaslab.umbc.edu/</p>

<p>Applications are invited to an all-expenses paid position at a 5-day<br />"IdeasLab"* workshop to be held near Prague CZ in June 2022. Thirty<br />successful applicants will be drawn in equal number from the relevant<br />sectors biological evolution, A-Life anbd theoretical physics. The week's<br />activities will lead these thirty to form interdisciplinary teams which<br />each propose how they can advance frontiers of abiogenesis research. Up to<br />$5 million total funding will be available for developing these ideas<br />produced by the week's activities. Further details of the event,<br />including the online application form, are found at the link posted above</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44525/synorth-exploring-the-evolution-of-synteny-and-long-range-regulatory-interactions-in-vertebrate-genomes</guid>
	<pubDate>Mon, 06 May 2024 06:21:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44525/synorth-exploring-the-evolution-of-synteny-and-long-range-regulatory-interactions-in-vertebrate-genomes</link>
	<title><![CDATA[Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes]]></title>
	<description><![CDATA[<p><span>Genomic regulatory blocks are chromosomal regions spanned by long clusters of highly conserved noncoding elements devoted to long-range regulation of developmental genes, often immobilizing other, unrelated genes into long-lasting syntenic arrangements. Synorth&nbsp;</span><a href="http://synorth.genereg.net/" target="_blank">http://synorth.genereg.net/</a><span>&nbsp;is a web resource for exploring and categorizing the syntenic relationships in genomic regulatory blocks across multiple genomes, tracing their evolutionary fate after teleost whole genome duplication at the level of genomic regulatory block loci, individual genes, and their phylogenetic context.</span></p>
<p><span>More at&nbsp;https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745767/</span></p><p>Address of the bookmark: <a href="http://synorth.genereg.net/" rel="nofollow">http://synorth.genereg.net/</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/26499/katju-lab</guid>
  <pubDate>Fri, 26 Feb 2016 03:25:32 -0600</pubDate>
  <link></link>
  <title><![CDATA[Katju Lab]]></title>
  <description><![CDATA[
<p>TheLab seek to understand the genetic factors contributing to genomic variation and phenotypic diversity.  To this end, we employ molecular and bioinformatic tools to study evolutionary processes at the level of populations, both experimental and natural, and genomes.  Our research interests encompass a wide range of topics, including the evolution of organellar and nuclear genomes, gene duplication and the origin of novel function, and the fitness and phenotypic consequences of mutation in evolution. For details regards ongoing projects, please see the Research page.</p>

<p>http://katjulab.com/research.html</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42035/pannzer-a-fully-automated-service-for-functional-annotation-of-prokaryotic-and-eukaryotic-proteins-of-unknown-function</guid>
	<pubDate>Thu, 13 Aug 2020 09:57:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42035/pannzer-a-fully-automated-service-for-functional-annotation-of-prokaryotic-and-eukaryotic-proteins-of-unknown-function</link>
	<title><![CDATA[PANNZER: a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function.]]></title>
	<description><![CDATA[<p><strong>PANNZER</strong>&nbsp;(Protein ANNotation with Z-scoRE) is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function.</p>
<p><strong>PANNZER</strong>&nbsp;(Protein ANNotation with Z-scoRE) is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function. The tool is designed to predict the functional description (DE) and GO classes.</p>
<p>PANNZER2 processes bacterial proteomes in minutes and eukaryotic proteomes in an hour. You can use&nbsp;<a href="http://ekhidna2.biocenter.helsinki.fi/AAI/">AAI-profiler</a>&nbsp;to summarize a proteome's species neighbors and reveal taxonomic identity or contamination.</p><p>Address of the bookmark: <a href="http://ekhidna2.biocenter.helsinki.fi/sanspanz/#" rel="nofollow">http://ekhidna2.biocenter.helsinki.fi/sanspanz/#</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/861/fiona-brinkman-laboratory</guid>
  <pubDate>Sun, 14 Jul 2013 12:46:31 -0500</pubDate>
  <link></link>
  <title><![CDATA[Fiona Brinkman Laboratory]]></title>
  <description><![CDATA[
<p>Infectious disease control needs to be made more “sustainable”. We need to reduce selective pressure on pathogens to evolve antibiotic resistance. We need to control infectious disease outbreaks and associated immune disorders with a better understanding of the genetic,  environmental and social factors that impact disease spread and severity.</p>

<p>Research Area</p>

<p>Investigating the role in disease of both the microbe and its host (i.e immune system failure), using genomics and systems biology-based approaches<br />Using genomics and network analysis to characterize disease outbreaks and their environmental/social/genetic causes, and<br />Identifying new anti-infective and immune modulating therapies/biomarkers.</p>

<p>Link @ http://www.brinkman.mbb.sfu.ca/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/879/bioprogramming</guid>
	<pubDate>Sun, 14 Jul 2013 16:29:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/879/bioprogramming</link>
	<title><![CDATA[BioProgramming]]></title>
	<description><![CDATA[<p>The completion of the first human genome drafts was just a start of the modern DNA sequencing era which resulted in further invention, improved development toward new advanced strategies of high-throughput DNA sequencing, so called the &ldquo;high-throughput next generation sequencing&rdquo; (HT-NGS). The decreasing genome sequencing cost and desire to explore and understand biological machanism at genomic level, speed up the genomic sequencing projects. In the fast growing HT-NGS technologies, the main challenge is to cope with the analysis of vast production of sequencing database through advanced bioinformatics tools. In oder to develope sotware/tools bioinformatician/ biological programmers need to expertise in any one one the programming language. However, sometime one language are not enough to handle all sort of biological needs, which compel us to learn new biologically suitable language to handle ever growing genome or protein sequences.</p><p>The next step after reading genetic code is writing a script to analyse and explore the hidden information. This tutorial is aimed to introduce you new biological programming languages with their packages/libraries, and assist in your scripting work.</p><p>Navigate the sub-section of this page [ see right hand side of the page for it ]</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1466/iscb-asia-2013-translational-bioinformatics-conference</guid>
  <pubDate>Thu, 08 Aug 2013 06:31:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[ISCB-Asia 2013 Translational Bioinformatics Conference]]></title>
  <description><![CDATA[
<p>ISCB-Asia 2013<br />Translational Bioinformatics Conference<br />Seoul, Korea<br />October 2 - 4, 2013</p>

<p>For more information visit: http://www.snubi.org/TBC2013/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1491/2013-nextgen-genomics-bioinformatics-technologies-ngbt-conference-new-delhi-india</guid>
  <pubDate>Thu, 08 Aug 2013 16:21:16 -0500</pubDate>
  <link></link>
  <title><![CDATA[2013 NextGen Genomics &amp; Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA]]></title>
  <description><![CDATA[
<p>2013 NextGen Genomics &amp; Bioinformatics Technologies (NGBT) Conference</p>

<p>SciGenom Research Foundation (SGRF) and Institute of Genomics and Integrative Biology (IGIB) are pleased to host the Next-Generation Sequencing and Bioinformatics for Genomics &amp; Healthcare conference.</p>

<p>In the ten years since the first human reference genome was completed for US$3 billion the sequencing technologies have radically changed leading to great reduction in sequencing cost. Today a human genome can be sequenced for under US$ 5000 in less than two weeks. It is expected that by the end of 2015 the cost of sequencing a human genome will drop to below thousand dollars. The next generation sequencing technologies over the past five years have enabled a large number of genomic studies that impact human health and disease. Also, this has made possible the growth of microbial, animal and plant genomics studies. While the data production has increased at a rapid pace challenges remain in analyzing and understanding the data. The conference will cover the next generation sequencing (NGS) technologies, bioinformatics for NGS and applications of NGS in many areas including personalized medicine.</p>

<p>For more info : http://www.scigenomconferences.com/2013/default.php</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/1970/indias-own-first-drug-from-biocon</guid>
	<pubDate>Sun, 11 Aug 2013 16:05:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/1970/indias-own-first-drug-from-biocon</link>
	<title><![CDATA[India&#039;s own first drug - from Biocon.]]></title>
	<description><![CDATA[<p><span><span>Psoriasis is immune-mediated disease that effects the skin. the Disease on an average affects about 10-20 million Indians and it attacks the immune system of human beings. In generally occurs, when the immune system mistakes a normal skin cell for a pathogen, and sends out faulty signals that cause overproduction of new skin cells. <a href="http://en.wikipedia.org/wiki/Psoriasis">More at &gt;&gt;</a><br /></span></span></p><p><span><span>Biocon, India's largest publicly-held biotechnology firm, launched its second novel 'lab-to-market' molecule,<strong> Alzumab</strong>, to treat chronic plaque <strong>psoriasis</strong> at a cost 50 per cent lower than the existing one. </span></span></p><p><span><span><span><span>Biocon is bringing Alzumab (a biologic) in the form of a vial after working on it for nearly a decade. The work had initially started in a joint effort with the Center of Molecular Immunology, Havana, but Biocon took control of the programme soon after and also bought out its partner a few years ago. Biocon tell to the media that genotypic played a critical role in functional studies and clinical trial Genomics. </span></span><br /><br />The Biocon drug, at around&nbsp;₹ 7,500 a vial, will cost half as much as the currently available drugs - from Pfizer and J&amp;J - to treat psoriasis, a skin disease that causes rough red areas where the skin comes off in small pieces. A patient is usually prescribed to consume more than 40 vials in a 24-week course.<br /><br /></span></span></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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