<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/34146?offset=10</link>
	<atom:link href="https://bioinformaticsonline.com/related/34146?offset=10" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42042/cluego-a-cytoscape-plug-in-that-visualizes-the-non-redundant-biological-terms-for-large-clusters-of-genes</guid>
	<pubDate>Thu, 13 Aug 2020 10:24:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42042/cluego-a-cytoscape-plug-in-that-visualizes-the-non-redundant-biological-terms-for-large-clusters-of-genes</link>
	<title><![CDATA[ClueGO: a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes]]></title>
	<description><![CDATA[<p>ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize. The identifiers can be uploaded from a text file or interactively from a network of Cytoscape. The type of identifiers supported can be easely extended by the user. ClueGO performs single cluster analysis and comparison of clusters. From the ontology sources used, the terms are selected by different filter criteria. The related terms which share similar associated genes can be fused to reduce redundancy. The ClueGO network is created with kappa statistics and reflects the relationships between the terms based on the similarity of their associated genes. On the network, the node colour can be switched between functional groups and clusters distribution. ClueGO charts are underlying the specificity and the common aspects of the biological role. The significance of the terms and groups is automatically calculated. ClueGO is easy updatable with the newest files from Gene Ontology and KEGG.</p><p>Address of the bookmark: <a href="http://www.ici.upmc.fr/cluego/" rel="nofollow">http://www.ici.upmc.fr/cluego/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/1535/bioinformatics-articles-links</guid>
	<pubDate>Sat, 10 Aug 2013 07:44:34 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/1535/bioinformatics-articles-links</link>
	<title><![CDATA[Bioinformatics Articles links]]></title>
	<description><![CDATA[<p>I found several useful bioinformatics articles which exaplain, define and elaborate&nbsp;the bioinformatics in scientific way. Therefore, instead of writting it again I decided to share it with you. Here is the list of some useful bioinformatics articles:</p><ul>
<li><a href="http://bioinfo.mbb.yale.edu/e-print/whatis-mim/gerstein_manuscript.pdf">What is Bioinformatics&nbsp;</a>- An introduction article by Mark Gerstein at Yale University.</li>
<li><a href="http://localhost/BOL/The%20powerful%20world%20of%20bioinformatics">The powerful world of bioinformatics</a></li>
<li><a href="http://news.bmn.com/hmsbeagle/99/notes/adapt">Bioinformatics: Key to 21st Century Biology</a></li>
<li><a href="http://www.ejb.org/content/vol3/issue2/full/4/index.html">The commercialization of bioinformatics by Phillip B.C. Jones</a></li>
<li><a href="http://smi-web.stanford.edu/pubs/SMI_Abstracts/SMI-98-0744.html">A Curriculum for Bioinformatics: The Time is Ripe&nbsp;</a>This article proproses requirements for a standard bioinformatics curriculum. By Russ Altman.</li>
<li><a href="http://www.er.doe.gov/production/ober/hug_top.html">Human Genome Research&nbsp;</a>A description of the Human Genome Project.</li>
<li><a href="http://www.the-scientist.com/yr2000/nov/prof_001127.html">Retooling for Bioinformatics&nbsp;</a>An article from The Scientist</li>
<li><a href="http://smi-web.stanford.edu/pubs/SMI_Abstracts/SMI-95-0586.html">A Programming Course in Bioinformatics&nbsp;</a>A discussion of the task of teaching an introductory bioinformatics course. By Russ Altman and John Koza.</li>
<li><a href="http://twod.med.harvard.edu/seqanal/">Sequence analysis&nbsp;</a>Keith Robison's guide to the exciting world of biosequence comparison! Useful background information on a variety of computational biology algorithms.</li>
<li><a href="http://www.d-trends.com/webs/BIN_92.html">Bioinformatics, Supercomputing, and Complex Genome Analysis&nbsp;</a>,<em>DOE/NIH Human Genome News&nbsp;</em>,&nbsp;<strong>4(5)&nbsp;</strong>January 1993.</li>
<li><a href="http://smi-web.stanford.edu/academics/MIS.html">Medical Informatics Training at Stanford University School of Medicine</a>An article from 1995 by Edward Shortliffe describing our medical informatics training program, the nature of the curriculum, the backgrounds of our students, and the career paths of our graduates.</li>
<li><a href="http://helix.biology.mcmaster.ca/721/access.html">Elementary Sequence Analysis - Database Searching&nbsp;</a>by B. Golding Jan 1996. Fasta, blast, blitz, blaze, flash, blocks.&nbsp;</li>
<li><a href="http://smi-web.stanford.edu/pubs/SMI_Abstracts/SMI-98-0731.html">Bioinformatics in Support of Molecular Medicine&nbsp;</a>A description of bioinformatics and its connection to clinical informatics. By Russ Altman.</li>
<li><a href="http://www.d-trends.com/webs/bio_business.html">Biology as a Business Venture and the Rise of Bioinformatics&nbsp;</a>, 1996.</li>
<li><a href="http://www.d-trends.com/webs/ics_preface.html">Preface to&nbsp;<em>Molecular Bioinformatics- Sequence Analysis&nbsp;</em></a>, 1997.</li>
<li><a href="http://www.d-trends.com/webs/gcb.html">Bioinformatics &amp; Cheminformatics in the Drug Discovery Cycle&nbsp;</a>, 1997.</li>
<li><a href="http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v389/n6649/full/389417a0_fs.html">Bioinformatics in a post-genomics age&nbsp;</a><em>Sept 1997</em></li>
<li><a href="http://www.d-trends.com/webs/BIN_97.html">Bioinformatics takes charge&nbsp;</a>,&nbsp;<em>Trends in Biotech.&nbsp;</em>,&nbsp;<strong>Vol. 16 No. 3 (170)</strong>, pp. 104-107, March 1998.</li>
<li><a href="http://www3.oup.co.uk/bioinformatics/hdb/Volume_14/Issue_07/html/btb119_gml.html">"A Curriculum For Bioinformatics: The Time Is Ripe"&nbsp;</a>An editorial from the journal BIOINFORMATICS-Bioinformatics, Vol 14, Issue 7, pages 549-550 (August 1998)</li>
<li><a href="http://www.d-trends.com/webs/BIN_98.html">Bioinformatics, pharma and farmers&nbsp;</a>,&nbsp;<em>Trends in Biotech.&nbsp;</em>,&nbsp;<strong>Vol. 17 No. 3 (182)&nbsp;</strong>, pp. 85-88. March 1999.</li>
<li><a href="http://www.sloan.org/programs/scitech_page1.htm">Bioinformatics/Computational Biology Programs&nbsp;</a>(May 1999)</li>
<li><a href="http://www.techfak.uni-bielefeld.de/bcd/ForAll/">Biocomputing For Everone&nbsp;</a>an introduction to biocomputing for the layperson published by the VSNS biocomputing division.</li>
<li><a href="http://www.uni-mainz.de/~cfrosch/bc4s/">Biocomputing For Schools&nbsp;</a>Another VSNS publication - this time aimed at highschool students, but fun to read for everyone.&nbsp; Includes articles on the application of bioinformatics to BSE research, and a ``Do-It-Yourself'' detailed example of a WWW search.</li>
<li><a href="http://cmgm.stanford.edu/~brutlag/Abstracts/brutlag94.html">Understanding the human genome&nbsp;</a>By D. L. Brutlag, in&nbsp;<em>Scientific American: Introduction to Molecular Medicine&nbsp;</em>, P. In Leder, D. A. Clayton, E. Rubenstein, Eds., (New York:&nbsp;<em>Scientific American&nbsp;</em>, 1994), pp. 153-168.</li>
<li><a href="http://www.d-trends.com/webs/viva.html">Viva bioinformatics, but who survives?&nbsp;</a>, 1999.</li>
<li><a href="http://recruit.sciencemag.org/feature/cperspec/bioinfo.shl">Bioinformatics: Playing The Numbers Game&nbsp;</a><em>June 1999</em></li>
<li><a href="http://www.technologyreview.com/magazine/sep99/regalado.asp">Mining the Genome&nbsp;</a><em>Sept 1999</em></li>
<li><a href="http://www.svhitech.com/20-21sv/20for.html">Commercialization of biological information and the rise of bioinformatics - Part I&nbsp;</a>, Nov/Dec 1999, 20/21, pp. 40-47.</li>
<li><a href="http://www.svhitech.com/22sv-s4/22bio1.html">Commercialization of biological information and the rise of bioinformatics - Part II&nbsp;</a>, Jan 2000, pp. 51-56.</li>
<li><a href="http://www.svhitech.com/23sv/23bio.html">Turbo-charging bioinformation for drug discovery&nbsp;</a>, Feb 2000, pp. 38-49.</li>
<li><a href="http://recruit.sciencemag.org/feature/advice/foc-bioin.shl">Bioinformatics: low supply, high demand&nbsp;</a><em>June 2000</em></li>
<li><a href="http://www.techreview.com/magazine/jul00/garber.asp">The Next Wave of the Genomics Business&nbsp;</a><em>July 2000</em></li>
<li><a href="http://www.sciam.com/2000/0700issue/0700howard.html">The Bioinformatics Gold Rush&nbsp;</a><em>July 2000</em></li>
<li><a href="http://nextwave.sciencemag.org/cgi/content/full/2000/08/23/1">Bioinformatics&nbsp;</a>.&nbsp;<a href="http://nextwave.sciencemag.org/">Next Wave&nbsp;</a>feature on careers in bioinformatics.<em>September 2000</em></li>
<li><a href="http://www.the-scientist.com/yr2000/nov/prof_001127.html">A prerequisite for working in thie field: love of computers&nbsp;</a>article from The Scientist (Nov 2000)</li>
<li><a href="http://www.technologyreview.com/magazine/sep00/mag_toc.asp">Sep/Oct 2000&nbsp;</a>issue of the MIT&nbsp;<a href="http://www.techreview.com/">Technology Review</a></li>
<li><a href="http://www.techfak.uni-bielefeld.de/bcd/ForAll/Econom/study.html">How to become a bioinformatics expert&nbsp;</a>, including a listing of<strong>European&nbsp;</strong>opportunities to study bioinformatics. Compiled by theVirtual School of Natural Sciences BioComputing Division.</li>
<li><a href="http://barton.ebi.ac.uk/papers/rev93_1/rev93_1.html">Protein Sequence Alignment and Database Scanning&nbsp;</a>Geoff Barton's review.</li>
<li><a href="http://ccsweb.njit.edu/~discdb/paper.html">Pattern matching and motifs&nbsp;</a></li>
<li><a href="http://www.cse.ucsc.edu/research/compbio/genex/genex.html">Knowledge-based Analysis of Microarray Gene Expression Data Using Support Vector Machines</a></li>
<li><a href="http://www.venus.co.uk/vhg/">VHG&nbsp;</a>Virtural HyperGlossary. Defines terms used in different subfields, currently Glycoscience, Protein Structure.</li>
<li><a href="http://bioinformatics.oupjournals.org/">LASSAP a LArge Scale Sequence compArison Package</a></li>
<li><a href="http://www.d-trends.com/webs/BIN_99.html">Bioinformatics in pre- and post-genomics eras&nbsp;</a>,&nbsp;<em>Trends in Biotech.&nbsp;</em>,<strong>Vol. 18&nbsp;</strong>, pp. 133-135, April 2000.</li>
<li><a href="http://www.svhitech.com/24SV/24bio1.html">Confluence of Western and Traditional Medicines and Future Prospectes - Part I&nbsp;</a>, Mar/Apr 2000, pp. 34-37.</li>
<li><a href="http://www.svhitech.com/24SV/24bio1.html">Confluence of Western and Traditional Medicines and Future Prospectes - Part II&nbsp;</a>, May/Jun 2000, pp. 66-74.</li>
<li><a href="http://www.oreilly.com/news/bioinformatics_0401.html">Computers + Biology = Bioinformatics&nbsp;</a><em>April 2001</em></li>
<li><a href="http://smi-web.stanford.edu/academics/articles/genSep01.pdf">Bioinformatics U.,&nbsp;<em>Genome Technology, September, 2001&nbsp;</em></a>An article from Genome Technology written by Nat Goodman about bioinformatics curricula.</li>
<li><a href="http://smi-web.stanford.edu/academics/articles/natOct25.pdf">Training in a Hybrid Discipline,&nbsp;<em>Nature, October 25, 2001&nbsp;</em></a>An article from Nature written by Potter Wickare and Paul Smaglik on bioinformatics training programmes in North America.</li>
<li><a href="http://www.the-scientist.com/yr2002/sep/prof1_020902.html">Bioinformatics Knowledge Vital to Careers - Competition from mathematicians and computer scientists compels biologists to become computational&nbsp;</a>article from The Scientist (Sept 2002)</li>
<li><a href="http://www.sciencemag.org/cgi/content/full/290/5491/471">The babel of bioinformatics&nbsp;</a>By Teresa Attwood,&nbsp;<em>Science&nbsp;</em>, 5491: 471 (2000).</li>
<li><a href="http://www.sciencemag.org/cgi/content/full/289/5488/2309">The quiet revolution: Biodiversity informatics and the internet&nbsp;</a>By Frank A. Bisby,&nbsp;<em>Science&nbsp;</em>, 289: 2309 (2000).</li>
<li><a href="http://www.nature.com/cgi-taf/dynapage.taf?file=/nature/journal/v409/n6822/full/409758a0_fs.html">Are you ready for the revolution?&nbsp;</a>By Declan Butler,&nbsp;<em>Nature&nbsp;</em>, 409: 758-760 (2001).</li>
<li><a href="http://www.businessweek.com/2000/00_15/b3676117.htm">Beyond the genome: Biotech's next holy grail&nbsp;</a>By Ellen Licking,&nbsp;<em>Business Week&nbsp;</em>, April 10, 2000.</li>
<li><a href="http://www.businessweek.com/2000/00_24/b3685001.htm">The genome explained&nbsp;</a>By Ellen Licking,&nbsp;<em>Business Week&nbsp;</em>, June 12, 2000.</li>
<li><a href="http://www.sfgate.com/cgi-bin/article.cgi?file=/chronicle/archive/2001/03/04/CS170178.DTL">Why bioinformatics is hot career&nbsp;</a>By Stacey Wells,&nbsp;<em>San Francisco Chronicle&nbsp;</em>, March 4, 2001.</li>
<li><a href="http://www.businessweek.com/bwdaily/dnflash/jun2001/nf2001067_198.htm">Proteomics: Beyond the genome&nbsp;</a>Edited by Patricia O'Connell, Business Week Online, June 7, 2001.</li>
<li><a href="http://www.washingtonpost.com/wp-dyn/articles/A23870-2002Mar13.html">A true believer dismisses indifference to bioinformatics&nbsp;</a>By Terence Chea,&nbsp;<em>Washington Post&nbsp;</em>, March 14, 2002.</li>
<li><a href="http://www.wired.com/news/medtech/0,1286,51428,00.html">Genome map on a grain of rice&nbsp;</a>By Kristen Philipkoski,&nbsp;<em>Wired News&nbsp;</em>, March 29, 2002.</li>
<li><a href="http://www.bio-itworld.com/archive/061202/class.html">Informatics moves to the head of the class&nbsp;</a>By Beth Schachter,&nbsp;<em>Bio-IT World&nbsp;</em>, June 12, 2002.</li>
<li><a href="http://www.bio-itworld.com/archive/081302/odyssey.html">The proteomics odyssey&nbsp;</a>By Malorye Branca,&nbsp;<em>Bio-IT World&nbsp;</em>, Aug. 13, 2002.</li>
<li><a href="http://news.com.com/2100-1001-956153.html">Dell goes nuts for clusters&nbsp;</a>By Michael Kanellos,&nbsp;<em>CNET News.com&nbsp;</em>, Sept. 2, 2002.</li>
<li><a href="http://www.bio-itworld.com/news/090502_report1114.html">IBM teams with TurboGenomics&nbsp;</a>By Salvatore Salamone,&nbsp;<em>Bio-IT World&nbsp;</em>, Sept. 5, 2002.</li>
<li><a href="http://www.bio-itworld.com/archive/090902/pharma.html">The new, new pharmacogenomics&nbsp;</a>By Malorye Branca,&nbsp;<em>Bio-IT World&nbsp;</em>, Sept. 9, 2002.</li>
<li><a href="http://www.bio-itworld.com/news/091702_report1218.html">RLX introduces a biocluster in a box&nbsp;</a>By Salvatore Salamone,&nbsp;<em>Bio-IT World&nbsp;</em>, Sept. 17, 2002.</li>
<li><a href="http://www.bio-itworld.com/news/092402_report1242.html">CombinatorX gets $40 million to look for drug synergies&nbsp;</a>By Salvatore Salamone,&nbsp;<em>Bio-IT World&nbsp;</em>, Sept. 24, 2002.</li>
<li><a href="http://www.bio-itworld.com/archive/100902/dna.html">Calculating with DNA&nbsp;</a>By Salvatore Salamone,&nbsp;<em>Bio-IT World&nbsp;</em>, October 2002.</li>
<li><a href="http://www.itworld.com/Tech/2987/021008dnachip/">Hitachi Soft develops low-cost human genome DNA chip&nbsp;</a>By Kuriko Miyake,&nbsp;<em>ITworld.com&nbsp;</em>, Oct. 8, 2002.</li>
<li><a href="http://www.newsfactor.com/perl/story/19772.html">IBM chooses Linux for 'Blue Gene' supercomputer&nbsp;</a>By Lisa Gill,<em>NewsFactor Network&nbsp;</em>, Oct. 24, 2002.</li>
<li><a href="http://www.cbsnews.com/stories/2002/10/29/tech/main527403.shtml">The international 'HapMap' project&nbsp;</a><em>cbsnews.com&nbsp;</em>, Oct. 29, 2002.</li>
<li><a href="http://www.upi.com/view.cfm?StoryID=20021101-053230-6291r">US stem cell policy deters investors&nbsp;</a>By Steve Mitchell,&nbsp;<em>UPI&nbsp;</em>, Nov. 2, 2002.</li>
<li><a href="http://www.trnmag.com/Stories/2002/111302/Biochip_sprouts_DNA_strands_111302.html">Biochip sprouts DNA strands&nbsp;</a>By Kimberly Patch,&nbsp;<em>Technology Research News&nbsp;</em>, Nov. 13, 2002</li>
<li><a href="http://www.bio-itworld.com/news/121002_report1674.html">Genomics consolidation &iuml;&iquest;&frac12; no pain, no gain&nbsp;</a>By Malorye Branca,&nbsp;<em>Bio-IT World&nbsp;</em>, Dec. 10, 2002.</li>
<li><a href="http://www.newscientist.com/news/news.jsp?id=ns99993243">Data stored in multiplying bacteria&nbsp;</a>By Natasha McDowell,<em>NewScientist.com&nbsp;</em>, Jan. 3, 2003.</li>
<li><a href="http://www.sciencedaily.com/releases/2003/03/030305081425.htm">Cowabunga! Scientists to start Bovine Genome Project&nbsp;</a><em>Science Daily&nbsp;</em>, March 5, 2003.</li>
<li><a href="http://www.the-scientist.com/memberloginreject.htm">Computational Analysis of Complexity in Gene Expression Arrays</a></li>
<li><a href="http://capb.dbi.udel.edu/main/BioCon_2003_sld/day+chen_final.pdf">Building your own Bioinformatics Supercomputer for Cheap Using Grid Technology</a></li>
<li><a href="http://www.utexas.edu/students/compbio/html/c.html#7">Career Advice for Computational Biology&nbsp;</a>By Amjad-Ali Khoja at U. Texas.</li>
<li><a href="http://www.pnas.org/">Proceedings of the National Academy of Sciences</a></li>
<li><a href="http://www.biochem.ucl.ac.uk/bsm/dbbrowser/jj/prefacefrm.html">A Practical Guide to protein sequence and structure analysis&nbsp;</a>at UCL</li>
</ul><p>Feel free to add more useful article links below by commenting on this page. Your comments are welcome.</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/4155/genetics-for-fun-and-profit-andrew-hessel-at-tedxvilnius</guid>
	<pubDate>Sun, 01 Sep 2013 19:15:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/4155/genetics-for-fun-and-profit-andrew-hessel-at-tedxvilnius</link>
	<title><![CDATA[Genetics for Fun and Profit: Andrew Hessel at TEDxVilnius]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/A2h_JW7X_HE" frameborder="0" allowfullscreen></iframe>Andrew Hessel co-chairs the Bioinformatics and Biotechnology track at the Singularity University, an institution founded by futurist Ray Kurzweil and X Prize Foundation CEO Peter Diamandis, with sponsorship from world-leading organizations that include Google, Autodesk, and NASA. He is also the founder of the Pink Army Cooperative, a venture aiming to make open source personalized cancer therapies. His work has been featured in The New York Times, Futurist Magazine, H+, and Wired News.

In the spirit of ideas worth spreading, TEDx is a program of local, self-organized events that bring people together to share a TED-like experience. At a TEDx event, TEDTalks video and live speakers combine to spark deep discussion and connection in a small group. These local, self-organized events are branded TEDx, where x = independently organized TED event. The TED Conference provides general guidance for the TEDx program, but individual TEDx events are self-organized.* (*Subject to certain rules and regulations)]]></description>
	
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18576/graduate-research-assistantships-university-of-nebraska-lincoln-unl</guid>
  <pubDate>Wed, 22 Oct 2014 10:05:31 -0500</pubDate>
  <link></link>
  <title><![CDATA[Graduate research assistantships @ University of Nebraska-Lincoln (UNL)]]></title>
  <description><![CDATA[
<p>Graduate research assistantships in quantitative genetics are available with Gota Morota in the Department of Animal Science at the University of Nebraska-Lincoln (UNL).</p>

<p>Current projects in the Morota lab include developing kernel-based whole-genome prediction and kernel-based genome-wide association models, polygenic modeling of binary traits, reexamining the results from quantitative genetics analysis in light of functional annotation, and extending kernel methods (such as GBLUP and RKHS) specifically tailored for diverse types of emerging omics data.</p>

<p>In addition, candidates will be expected to leverage opportunities to interact with faculty in animal genetics and biometrics at the UNL in the areas of bioinformatics, breeding, functional genomics, quantitative genetics, and molecular genetics.</p>

<p>Candidates should have a B.S. or M.S. degree in quantitative disciplines with strong background and interest in statistical computing. <br />The starting date is Fall 2015. <br />For more information about research in the Morota lab at the UNL, visit: http://www.morotalab.org</p>

<p>A letter of interest in the position, C.V., and contact information for <br />three references should be emailed to Gota Morota at . <br />Review of applications will begin immediately, and continue until the <br />positions are filled. Informal inquiries are also welcome.</p>

<p>Also, please see: http://animalscience.unl.edu/anscprospectivegraduatestudents</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/18653/genetic-code-amino-acid</guid>
	<pubDate>Sun, 26 Oct 2014 07:45:58 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/18653/genetic-code-amino-acid</link>
	<title><![CDATA[Genetic code - Amino Acid]]></title>
	<description><![CDATA[<p>The genetic code consists of 64 triplets of nucleotides. These triplets are called codons.With three exceptions, each codon encodes for one of the 20 amino acids used in the synthesis of proteins. That produces some redundancy in the code: most of the amino acids being encoded by more than one codon.</p><p>The image summarise all in one.</p><p>More at http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/C/Codons.html</p>]]></description>
	<dc:creator>Poonam Mahapatra</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/18653" length="226605" type="image/jpeg" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/3885/precision-medicine</guid>
	<pubDate>Sat, 24 Aug 2013 15:47:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/3885/precision-medicine</link>
	<title><![CDATA[Precision Medicine]]></title>
	<description><![CDATA[<p>Coupling established clinical&ndash;pathological indexes with state-of-the-art molecular profiling to create diagnostic, prognostic, and therapeutic strategies precisely tailored to each patient's requirements &mdash; hence the term &ldquo;Precision medicine&rdquo;&nbsp;</p>
<p>Source:<a href="http://www.nejm.org/doi/full/10.1056/NEJMp1114866">http://www.nejm.org/doi/full/10.1056/NEJMp1114866</a></p>
<p><strong>Another video on precision medicine</strong>:</p>
<p><a href="http://www.youtube.com/watch?v=Pi8W0yOXnzE">http://www.youtube.com/watch?v=Pi8W0yOXnzE</a></p>
<p>Precision Medicine basically intergrates bioinformatics, genomics , genetics, molecular biology and nanotechnology to deliver precise cure/diagnotics to a specific patient.</p>
<p>Examples:</p>
<ul>
<li><span>The drug imatinib (Gleevec) designed to inhibit an altered enzyme produced by a fused version of two genes found in chronic myelogenous leukemia.</span></li>
<li><span>The breast cancer drug trastuzumab (Herceptin) works only for women whose tumors have a particular genetic profile called HER-2 positive.</span></li>
</ul>
<p><span>E.g. source :</span></p>
<p><span><a href="http://www.bionews-tx.com/news/2013/08/15/how-the-impact-of-cancer-genomics-on-precision-medicine-is-revolutionizing-cancer-treatment/">http://www.bionews-tx.com/news/2013/08/15/how-the-impact-of-cancer-genomics-on-precision-medicine-is-revolutionizing-cancer-treatment/</a></span></p><p>Address of the bookmark: <a href="http://www.cbsnews.com/video/watch/?id=50149783n" rel="nofollow">http://www.cbsnews.com/video/watch/?id=50149783n</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/6800/y-chromosome-is-worthless</guid>
	<pubDate>Sun, 24 Nov 2013 13:17:27 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/6800/y-chromosome-is-worthless</link>
	<title><![CDATA[Y-chromosome is worthless!!!]]></title>
	<description><![CDATA[<p>The testis determinant factor<em><span>&nbsp;</span><strong>Sry</strong></em><span>&nbsp;and the spermatogonial proliferation factor&nbsp;</span><em><strong>Eif2s3y</strong> genes </em> of Y-chromosome&nbsp;play role in sex determination and performing first stage of spermatogenesis respectively.</p><p><strong>Paper</strong>:</p><p><a href="http://www.sciencemag.org/content/early/2013/11/20/science.1242544">http://www.sciencemag.org/content/early/2013/11/20/science.1242544</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/13878/janet-iwasa-how-animations-can-help-scientists-test-a-hypothesis</guid>
	<pubDate>Sun, 10 Aug 2014 15:26:04 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/13878/janet-iwasa-how-animations-can-help-scientists-test-a-hypothesis</link>
	<title><![CDATA[Janet Iwasa: How animations can help scientists test a hypothesis]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/YvyeI-Axb70" frameborder="0" allowfullscreen></iframe>3D animation can bring scientific hypotheses to life. Molecular biologist (and TED Fellow) Janet Iwasa introduces a new open-source animation software designed just for scientists.

TEDTalks is a daily video podcast of the best talks and performances from the TED Conference, where the world's leading thinkers and doers give the talk of their lives in 18 minutes (or less). Look for talks on Technology, Entertainment and Design -- plus science, business, global issues, the arts and much more.
Find closed captions and translated subtitles in many languages at http://www.ted.com/translate

Follow TED news on Twitter: http://www.twitter.com/tednews
Like TED on Facebook: https://www.facebook.com/TED

Subscribe to our channel: http://www.youtube.com/user/TEDtalksDirector]]></description>
	
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43698/mimilook-a-phylogenetic-workflow-for-detection-of-gene-acquisition-in-major-orthologous-groups-of-megavirales</guid>
	<pubDate>Mon, 10 Jan 2022 06:32:22 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43698/mimilook-a-phylogenetic-workflow-for-detection-of-gene-acquisition-in-major-orthologous-groups-of-megavirales</link>
	<title><![CDATA[MimiLook: A Phylogenetic Workflow for Detection of Gene Acquisition in Major Orthologous Groups of Megavirales]]></title>
	<description><![CDATA[<p><span>This tool detects statistically validated events of gene acquisitions with the help of the T-REX algorithm by comparing individual gene tree with NCBI species tree. In between the steps, the workflow decides about handling paralogs, filtering outputs, identifying Megavirale specific OGs, detection of HGTs, along with retrieval of information about those OGs that are monophyletic with organisms from cellular domains of life.&nbsp;</span></p>
<p>https://www.readcube.com/articles/10.3390%2Fv9040072</p><p>Address of the bookmark: <a href="https://pubmed.ncbi.nlm.nih.gov/28387730/" rel="nofollow">https://pubmed.ncbi.nlm.nih.gov/28387730/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34569/ksnp30-snp-detection-and-phylogenetic-analysis-of-genomes-without-genome-alignment-or-reference-genome</guid>
	<pubDate>Fri, 08 Dec 2017 16:48:40 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34569/ksnp30-snp-detection-and-phylogenetic-analysis-of-genomes-without-genome-alignment-or-reference-genome</link>
	<title><![CDATA[kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome]]></title>
	<description><![CDATA[<p><span>Sept. 20, 2017 Version 3.1 released. Major upgrade. Version 3.1 fixes the problems with SNP annotation that arose when NCBI discontinued use of GI numbers. Please read carefully the Preface (page 3) and the File of annotated genomes section (pages 9-10) in the version 3.1 User Guide. Thanks to Tom Slezak for revsing the get_genbank_file3 script and to Tod Stuber (USDA) for testing version 3.1 even though he doesn't need the annotation feature. All users are encouraged to upgrade to version 3.1.&nbsp;<br></span></p><p>Address of the bookmark: <a href="https://sourceforge.net/projects/ksnp/files/" rel="nofollow">https://sourceforge.net/projects/ksnp/files/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

</channel>
</rss>