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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/34326?offset=10</link>
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	<description><![CDATA[]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/35395/comprehensive-list-of-visualization-tools-for-biological-pathways</guid>
	<pubDate>Tue, 30 Jan 2018 06:01:31 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/35395/comprehensive-list-of-visualization-tools-for-biological-pathways</link>
	<title><![CDATA[Comprehensive list of visualization tools for biological pathways]]></title>
	<description><![CDATA[<p>The study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation but in a tightly controlled network of interactions and reactions. Activation of a pathway typically leads to a change of state in the cell. Pathways come in different flavors, depending on their functions in the cell &ndash; the three main types are metabolic pathways, gene regulatory pathways, and signaling pathways. These biological pathways and networks are not only an appropriate approach to visualize molecular reactions. They have also become one leading method in -omics data analysis and visualization.</p><p><img src="https://photos-1.dropbox.com/t/2/AABemz29qAuSTqSzr5mEsQE7JIMxZlU1CBy0E5n0yUVYbA/12/85115969/png/32x32/1/_/1/2/pathway.png/EOfXoUIYrJ8CIAcoBw/01qsT2eykyPvSH-rNpy3cqioDzZPc4i-xULG3BEZvCk?preserve_transparency=1&amp;size=1280x960&amp;size_mode=3" width="800" height="533" alt="image" style="border: 0px;"></p><p>Following are the comprehensive list of visualization tools for biological pathways:</p><p>BiNA</p><p>Drawings of metabolic networks supporting hiding of cofactors and drawing of chemical structures</p><p>http://bina.unipax.info/</p><p>BioTapestry</p><p>Interactive tool for building, visualizing and sharing gene regulatory network models over the web</p><p>http://www.biotapestry.org/</p><p>Caleydo</p><p>Visual analysis framework targeted at biomolecular data. Visualization of interdependencies between multiple datasets</p><p>http://www.caleydo.org/</p><p>CellDesigner</p><p>A modeling tool for biochemical networks</p><p>http://www.celldesigner.org/</p><p>Edinburgh Pathway Editor</p><p>Edit and draw pathway diagrams</p><p>http://epe.sourceforge.net/SourceForge/EPE.html</p><p>GenMAPP</p><p>Visualization of gene expression and other genomic data on maps representing biological pathways and groupings of genes</p><p>http://www.genmapp.org/</p><p>Ingenuity IPA</p><p>Data integration platform and manually annotated pathways</p><p>http://tinyurl.com/IngenuityPath</p><p>JDesigner</p><p>Graphical modeling environment for biochemical reaction networks</p><p>http://jdesigner.sourceforge.net/Site/JDesigner.html</p><p>KaPPA View</p><p>Plant pathways</p><p>http://kpv.kazusa.or.jp/</p><p>KEGG Atlas</p><p>Interactive Kyoto Encyclopedia of Genes and Genomes pathways</p><p>http://www.genome.jp/kegg/</p><p>Omix&nbsp;</p><p>Visualizing multi-omics data in metabolic networks</p><p>https://www.omix-visualization.com</p><p>PathVisio&nbsp;</p><p>Biological pathway analysis software that allows drawing, editing and analysis of biological pathways</p><p>http://www.pathvisio.org/</p><p>VitaPad&nbsp;</p><p>Application to visualize biological pathways and map experimental data to them</p><p>http://tinyurl.com/vitapad/</p><p>Web tools for pathways</p><p>ArrayXPath&nbsp;</p><p>Mapping and visualizing microarray gene-expression data and integrated biological pathway resources using SVG</p><p>http://tinyurl.com/ArrayXPath/</p><p>GEPAT&nbsp;</p><p>Integrated analysis of transcriptome data in genomic, proteomic and metabolic contexts</p><p>http://gepat.sourceforge.net/</p><p>iPath&nbsp;</p><p>Web-based tool for the visualization, analysis and customization of pathway maps</p><p>http://pathways.embl.de/</p><p>Kegg-Based Viewer&nbsp;</p><p>KEGG-based pathway visualization tool for complex high-throughput data</p><p>http://www.g-language.org/data/marray/</p><p>MapMan&nbsp;</p><p>User-driven tool that displays large datasets onto diagrams of metabolic pathways or other processes</p><p>http://mapman.gabipd.org/web/guest/mapman</p><p>MetPA&nbsp;</p><p>Analysis and visualization of metabolomic data within the biological context of metabolic pathways</p><p>http://metpa.metabolomics.ca</p><p>Omics Viewer&nbsp;</p><p>Data mapping on BioCyc pathways (collection of 5500 pathway/genome databases)</p><p>http://www.biocyc.org/</p><p>Pathway Explorer</p><p>Interactive Java drawing tool for the construction of biological pathway diagrams in a visual way and the annotation of the components and interactions between them</p><p>http://genome.tugraz.at/pathwayexplorer/pathwayexplorer_description.shtml</p><p>Pathway projector&nbsp;</p><p>Zoomable pathway browser using KEGG atlas and Google Maps API</p><p>http://www.g-language.org/PathwayProjector/</p><p>PATIKA&nbsp;</p><p>Integrated environment composed of a central database and a visual editor, built around an extensive ontology and an integration framework</p><p>http://www.cs.bilkent.edu.tr/~patikaweb/</p><p>Reactome SkyPainter&nbsp;</p><p>Visualization of over-represented pathways and reactions from gene lists</p><p>http://www.reactome.org/skypainter-2</p><p>WikiPathways</p><p>Wiki-based, open, public platform dedicated to the curation of biological pathways by and for the scientific community</p><p>http://www.wikipathways.org/</p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/36281/binc-bioinformatics-national-certification-examination-2018</guid>
	<pubDate>Mon, 23 Apr 2018 03:34:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/36281/binc-bioinformatics-national-certification-examination-2018</link>
	<title><![CDATA[BINC (Bioinformatics National Certification) Examination 2018]]></title>
	<description><![CDATA[<p>Bioinformatics National Certification (BINC) was instituted by Department of Biotechnology, Government of India in 2005 at Savitribai Phule Pune University, formerly University of Pune, Pune to certify bioinformatics professionals and recognizing candidate's theoretical and practical ability and fostering interdisciplinary research. Later on, it was transferred to Jawaharlal Nehru University, New Delhi and then to Pondicherry University, Puducherry. Pondicherry University conducted the BINC examination in 2015, 2016 and 2017.</p><div><p>Biotech Consortium India Limited (BCIL), New Delhi is conducting the BINC 2018 examination on behalf Department of Biotechnology, Government of India.</p></div><div><p>BINC is a certification programme for graduate and post-graduate students for recognizing their exceptional bioinformatics knowledge and skills and to improve their employment opportunities. There is a growing need for trained manpower in the area of Bioinformatics. Currently, various universities and institutions, both government and private, impart Bioinformatics education in India. The qualifying candidates will be awarded a lifetime certificate. This certification would facilitate industries and potential employers in recruitment of Bioinformatics professionals having exceptionally good bioinformatics skills.</p></div><div><p>The certification under Bioinformatics National Certification (BINC) scheme is given to the candidates after three tier selection process. The successful candidates are also eligible for availing Junior Research Fellowship (JRF) for pursuing Ph.D. in Bioinformatics at recognized Indian universities/institutes. The research fellowships of all BINC qualified Indian nationals are funded by DBT. BINC qualified candidates are called DBT certified Bioinformaticians while the individuals availing the fellowships are called as DBT-BINC Junior Research Fellows (DBT-BINC-JRF). Cash prize of 10,000/- each is awarded to the top 10 BINC qualifiers.</p></div><div><p><strong>Eligibility</strong></p></div><div><p>i) Bachelor's/Master's degree in Life Sciences, Physical Sciences, Chemical Sciences, Mathematical Sciences, Agriculture, Veterinary, Medicine, Pharmacy, Engineering and Technology.&nbsp;</p></div><div><p>ii) No formal training, diploma or certificate in bioinformatics is required.</p></div><div><p>iii) Candidates in final year of Bachelor's/ Master's degree are also eligible to apply.</p></div><div><p><strong><a href="http://bcil.nic.in/PatternofExamination.html" target="_blank">Pattern of Examination&nbsp;</a></strong></p></div><div><p><strong>Syllabus</strong>&nbsp;</p></div><div><p>The syllabus consists of six sections - Bioinformatics, Biology, Physical Science, Chemical Science, Mathematics &amp; Statistics, and Information Technology.</p></div><div><ul>
<li><a href="http://bcil.nic.in/files/BINC/BINC_SYLLABUS_for_Paper_I_2018.pdf" target="_blank">Syllabus for Paper-I (Objective)</a></li>
<li><a href="http://bcil.nic.in/files/BINC/BINC_SYLLABUS_for_Paper_II_2018.pdf" target="_blank">Syllabus for Paper-II (Short answers)</a></li>
<li><a href="http://bcil.nic.in/files/BINC/BINC_SYLLABUS_for_Paper_III_2018.pdf" target="_blank">Syllabus for Paper-III (Practical)</a></li>
</ul></div><div><p><strong>Note: Paper-III will be computer based practical and will include programming on Bioinformatics</strong></p></div><div><p><strong><a href="http://bcil.nic.in/files/BINC/Important_Dates.pdf" target="_blank">Important Dates</a></strong></p></div><div><p><strong><a href="http://bcil.nic.in/files/BINC/Examination_Centers.pdf" target="_blank">Examination Centers&nbsp;</a></strong></p></div><div><p><strong><a href="http://bcil.nic.in/files/BINC/BINC_Fellowship.pdf" target="_blank">BINC Fellowship&nbsp;</a></strong></p></div><div><p><strong><a href="http://bcil.nic.in/formanddownload.html" target="_blank">Forms &amp; Downloads&nbsp;</a></strong></p></div><div><p><strong><a href="http://bcil.nic.in/files/BINC/FAQs.pdf" target="_blank">FAQs&nbsp;</a></strong>&nbsp;</p></div><div><h3>Contact Us</h3></div><div><ul>
<li>Nisha Singh</li>
<li>Biotech Consortium India Limited</li>
<li>(CIN: U73100DL1990PLC041486)</li>
<li>5th Floor, Anuvrat Bhawan 210, Deen Dayal Upadhyaya Marg New Delhi - 110 002</li>
<li>Tel.: 011-2321 9064-67 Ext. 231, 236</li>
<li>Email - For general BINC queries:<a href="mailto:binc.dbt@biotech.co.in" target="_blank">binc.dbt@biotech.co.in</a></li>
<li>Helpline for Application submission related queries:<a href="mailto:binc.binchelpdesk@biotech.co.in" target="_blank">binchelpdesk@biotech.co.in</a></li>
<li>Website:&nbsp;<a href="http://bcil.nic.in/BINC.html" target="_blank">www.bcil.nic.in/BINC.html</a></li>
</ul></div>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29998/csir-nehru-science-postdoctoral-research-fellowship</guid>
  <pubDate>Tue, 29 Nov 2016 12:34:59 -0600</pubDate>
  <link></link>
  <title><![CDATA[CSIR Nehru Science Postdoctoral Research Fellowship]]></title>
  <description><![CDATA[
<p>CSIR Nehru Science Postdoctoral Research Fellowship</p>

<p>About Fellowship: <br />CSIR Nehru Science Postdoctoral Research Fellowship Scheme is an Research Fellowship awarded/given by HRD Ministry, Govt. of India every year to more than 100 fellows.</p>

<p>It was started to identify promising and young researchers with novel ideas and provide them research opportunities in the areas of basic science, engineering, medicine &amp; agriculture.</p>

<p>The fellowship aims at facilitating their transition from mentored to independent research career.</p>

<p>In addition, check these ICTS Research Fellowships:<br />1.) Max-Planck Partner Group Fellowships 2017-18<br />2.) ICTS-Simons Postdoctoral Fellowships 2017<br />3.) ICTS Post Doctoral Fellowships 2017<br />4.) Airbus Prize Postdoctoral Fellowship 2017-18</p>

<p>Eligibility: To be eligible for this fellowship, you:<br />1.) PhD degree (within 3 years of award of PhD degree), OR<br />2.) Those who have submitted PhD theses.<br />3.) Applicants should have research publications in good impact factor SCI journals.<br />4.) Indian nationals, Persons of Indian Origin (PIO) &amp; Overseas Citizen of India (OCI), a can also apply.<br />5.) Maximum Age Limit: 32 years.</p>

<p>Duration: <br />– 2 Years.<br />– extendable for a maximum of 1 more year based on performance.</p>

<p>Remuneration: <br />– Rs. 50,000/- per month plus House Rent Allowance (HRA)<br />– A contingency grant of Rs. 3.0 lakh per annum.<br />– 25% of the contingency grant can be used for domestic and international travel.</p>

<p>Mode of Selection: You can apply throughout the year, but selection will be made twice a year, in June and December.</p>

<p>How to Apply: <br />– Read the instructions, given at Annexure-I in this PDF file.<br />– And, application form is given as, Annexure-II.<br />– Fill the form &amp; send it to the given address in the PDF file.</p>

<p>Deadline: Rolling Deadline (Applications accepted throughout the year)</p>

<p>Also See: Research Internship/ Fellowship in India:<br />1.) IIT Bombay Research Internship Awards Programme 2016-17<br />2.) IIT Delhi Internship Program 2016-17<br />3.) DAAD WISE – International Internship in Germany<br />4.) Summer Research Fellowship Programme| JNCASR Bangalore<br />5.) Indian Academy of Sciences Summer Internships 2017<br />6.) Winter Internship – IIT Bombay NPDE-TCA<br />7.) Viterbi – India Program 2017 | Research Internship in US<br />8.) Internship – Centre for Stem Cell Research, Vellore</p>

<p>Accommodation &amp; other benefits: <br />– Accommodation may be provided by CSIR, if available.<br />– Medical benefits as per CSIR norms.</p>

<p>For more details: <br />– Check this PDF Notification of Fellowship.<br />– List of CSIR Labs &amp; their work/activities can be seen at www.csir.res.in.</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/43092/where-to-aproach-for-rd-funds-in-india</guid>
	<pubDate>Thu, 24 Jun 2021 01:04:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/43092/where-to-aproach-for-rd-funds-in-india</link>
	<title><![CDATA[Where to Aproach for R&amp;D Funds in India ?]]></title>
	<description><![CDATA[<p>Companies and governments do research and development (R&amp;D/ R'n'D/ R+D) to promote innovation in order to produce new goods or services and/or enhance existing product lines. R&amp;D covers all actions inside an organization aimed at boosting innovation, such as creating incubators, assisting innovators in scaling up their ideas, and cultivating an innovation culture.</p><p>Here are the list of all the research and development funding agencies in India.</p>]]></description>
	<dc:creator>Surabhi Chaudhary</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/43092" length="73912" type="application/pdf" />
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/4220/cv-of-dr-pranjal-chandra</guid>
	<pubDate>Wed, 04 Sep 2013 11:15:25 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/4220/cv-of-dr-pranjal-chandra</link>
	<title><![CDATA[CV of Dr. Pranjal Chandra]]></title>
	<description><![CDATA[]]></description>
	<dc:creator>Pranjal Chandra PhD</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/4220" length="394752" type="application/msword" />
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27240/bioinformatics-tutor-at-pgimer</guid>
  <pubDate>Wed, 04 May 2016 08:40:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Tutor at PGIMER]]></title>
  <description><![CDATA[
<p>Postgraduate Institute of Medical Education and Research (PGIMER) - Chandigarh, Chandigarh<br />₹9,300 - ₹34,800 a month<br />Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh invites Online Applications for recruitment of following Group 'A', 'B' and 'C' posts. The closing date for submission of online applications is up to 12th May 2016.</p>

<p>No of Vacancies: 01<br />Pay Scale: Rs. 9300-34800 + Grade Pay Rs. 4600/-</p>

<p>Educational Qualification and Experience: (From Recognized University / Institute) M.Sc. in Biotechnology, Molecular Biology, Human Genomics / Biochemistry / Biophysics.</p>

<p>Age Limit: 18-50 years</p>

<p>Please see Detailed Advertisement Link for full info: https://drive.google.com/file/d/0Bz3xO6e_7OeeZllINnRyWlN5UFE/view</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27453/senior-project-fellow-bioinformatics-at-nbri</guid>
  <pubDate>Sat, 21 May 2016 21:01:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Project Fellow Bioinformatics at NBRI]]></title>
  <description><![CDATA[
<p>Walk In Interview No. 03/Project/2016<br />Senior Project Fellow Bioinformatics Job vacancies in CSIR- National Botanical Research Institute (NBRI), Lucknow<br />Area III: Molecular Biology &amp; Biotechnology<br />Qualification : 1st Class M.Sc. in Bioinformatics/Biotechnology/ Life Science /Biochemistry/Botany with 2 years research experience and at least one publication in SCI Journal or 1st class M.Tech in Bioinformatics<br />Age : 32 years<br />Salary : Rs.18000<br />How to apply<br />Date &amp; Venue of Interview For Area III: 27-05-2016 at 11.00 A.M. at Conference Room, T.N. Khushoo Block, NBRI, Lucknow.</p>

<p>http://www.nbri.res.in/temp.php</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27701/assistant-professor-bioinformatics-teaching-assistant-at-gujarat-university</guid>
  <pubDate>Sat, 04 Jun 2016 16:04:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[Assistant Professor Bioinformatics / Teaching Assistant at Gujarat University]]></title>
  <description><![CDATA[
<p>Assistant Professor Bioinformatics / Teaching Assistant Jobs recruitment in Gujarat University<br />Departments :</p>

<p>M.Sc. Bioinformatics Climate Change and Impacts Management<br />M.Sc. Biotechnology and Clinical Research</p>

<p>Department of Computer Science (Rollwala Computer Centre)<br />Appointment will be on purely contract basis for 11 months on consolidated salary. Reservation as per rules<br /> <br />How to apply<br />All the candidate are here by required to fill up the application form and given to concern Department, Gujarat University, Ahmedabad (Form can be submitted personally or thorough post/courier.) Candidates are supposed to attach the self attested photocopies of their required testimonials along with application form. Last date of receipt of application is 10/06/2016.</p>

<p>More http://www.gujaratuniversity.org.in/web/NWD/NewsEvents/1700_Recruitments%20at%20Gujarat%20University.asp</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28425/advertisement-for-junior-research-fellowjrf-at-school-of-computational-and-integrative-sciences-jawaharlal-nehru-university</guid>
  <pubDate>Thu, 14 Jul 2016 07:24:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Advertisement for Junior Research Fellow(JRF)  at School of Computational and Integrative Sciences  Jawaharlal Nehru University]]></title>
  <description><![CDATA[
<p>Advertisement for Junior Research Fellow(JRF) - (1)</p>

<p>Applications are invited for a post in DST, India funded Project entitled: "Positive and negative impacts of macromolecular crowding agents during target site location by DNA binding proteins – origin of optimal search at physiological ionic concentration (Reference Number: ECR/2016/000188) ''. The selected candidate will be appointed purely on temporary basis, initially for two years as a JRF that may be extended to one year of SRF based on the performance.</p>

<p>Position: Junior Research Fellow (1)</p>

<p>Qualifications &amp; Experience: Candidate must have a consistently good academic record with at least 60% marks in all throughout and must have qualified NET/GATE.</p>

<p>Desirable: Basic knowledge in the field of biophysics, molecular simulations and computational biology are desirable.</p>

<p>Salary: Consolidated Rs. 25,000 per month.</p>

<p>Tenure: The project duration is for three years and the selected candidate would be appointed after an interview. Appointment will be purely on temporary basis as stipulated by the existing rules of the University.</p>

<p>Interested candidates need to send an application to the address mentioned below mentioning the name of the project and post applied for (on the cover of the envelope).</p>

<p>The applications along with CV should be mailed at the address given below. Name, address, contact number and e. mail address of two referees must be enclosed with the application. The last date for the application is July 31st 2016.</p>

<p>Dr. Arnab Bhattacharjee (Principal Investigator) <br />Assistant Professor <br />School of Computational and Integrative Sciences <br />Jawaharlal Nehru University <br />New Delhi-110067 <br />E-mail: arnab@jnu.ac.in</p>

<p>Note: 1. Only shortlisted candidates will be communicated to appear in the interview at SCIS, JNU and no other communications in this regard will be entertained.</p>

<p>2. No TA/DA will be paid for appearing in interview.</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28577/research-associate-computer-sciences-recruitment-in-national-bureau-of-plant-genetic-resources</guid>
  <pubDate>Thu, 28 Jul 2016 04:39:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate (Computer Sciences) recruitment in National Bureau of Plant Genetic Resources]]></title>
  <description><![CDATA[
<p>Research Associate (Computer Sciences) recruitment in National Bureau of Plant Genetic Resources</p>

<p>Project: Indo-UK Centre for improvement of Nitrogen use efficiency in wheat Dr. Soma S. Marla, Pr. Scientist (Bioinformatics), Division of Genomic Resources, ICAR, NBPGR, ND.</p>

<p>Qualification: Ph.D. Degree in Computer Sciences/Bioinformatics OR 1. First class Master’s degree in any discipline of Plant Sciences with specialization in Computer Sciences/ Bioinformatics having 1st division or 60% marks or equivalent overall grade point average with at least two years of research experience as evidenced from Fellowship/ Associate ship. 2. NET qualification is essential for the candidates with 3+2 years B.Sc.+ M.Sc. Desirable: Demonstrated experience &amp; skills in database design, management, UNIX OS, in NGS data analysis. Experience substantiated by publications of high quality will be preferred.</p>

<p>No.of Post: 1</p>

<p>Pay Scale: Rs. 40,000 (Ph.D)/ Rs + 30 % HRA; Rs.38,000 ( Masters Degree 0 + 30 % HRA).</p>

<p>Age Limit : below 40 years for RA position<br />How to apply<br />Applicants for RA post should send their complete CV (Advance copy of the application may be sent by email to :soma.marla@icar.gov.in or ssmarl@yahoo.com, should enclose the copy of the research publications; one page summary of their achievement relevant to the post applied for; and should enclose two reference letters (one must be from the person with whom worked latest). Shortlisted candidate will be intimated for interview by email.</p>

<p>The candidates who wish to attend the walk-in interview are requested to bring with them five copies of the CV (one copy with photograph) as per the format given below. Also, the candidates should bring the original documents such as degree certificates, marks sheets, publications, thesis, experience certificate etc. for verification. </p>

<p>Date of Interview: 17.8.2016.</p>

<p>More at http://www.nbpgr.ernet.in/Downloadfile.aspx?EntryId=7133</p>
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