Jit
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Genomics and sequencing approach for identification of biomarkers to assess the efficacy of TGF-βRI...
By Rahul Agarwal 3763 days agoLiver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There are multiple signaling pathways responsible for causing cancer amongst which TGFb is most important cytokine whose signaling pathway promote...Scaffolding of a bacterial genome using MinION nanopore sequencing
By Rahul Agarwal 3427 days agowww.nature.com - Second generation sequencing has revolutionized genomic studies. However, most genomes contain repeated DNA elements that are longer than the read lengths achievable with typical sequencers, so the genomic order of several generated contigs cannot...Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
By Strand 2957 days agoLive Webinar on RNA-Seq Data Analysis Abstract: Strand NGS supports an extensive workflow for the analysis and visualization of RNA-Seq data. The workflow includes Transcriptome / Genome alignment, Differential expression analysis with Statistical...Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
By Jit 2740 days agosourceforge.net - Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce genomic, metagenomic, transcriptomic, metatranscriptomic,...Earth BioGenome Project
By Jit 2404 days agoThe central goal of the Earth BioGenome Project is to understand the evolution and organization of life on our planet by sequencing and functionally annotating the genomes of 1.5 million known species of eukaryotesApollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
By BioStar 1713 days agogithub.com - Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Described by Firtina et al. (preliminary version...Entire Human Genome Sequencing !
By LEGE 235 days agoCost-effective whole human genome sequencing has revolutionized the landscape of genetic research and personalized medicine by making comprehensive genetic analysis accessible to a wider population. Through advancements in sequencing technologies,...
Structure of Binary files used for storing sequencing data-bam and sff
Last updated 4122 days ago by Rahul AgarwalMany times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link for those who looking for structure of Bam and sff...-
Bioinformatics and Sequencing Courses and Workshops
Last updated 4109 days ago by Rahul Agarwal Comments (2)Swiss Institute of Bioinformatics (SIB) organises lots of bioinformatics courses covering wide range of topics: http://www.isb-sib.ch/education/training-courses.html Canadian bioinformatics also organises various bioinformatics and sequencing... Illuminating next generation sequencing data with Go
By Rahul Agarwal 4110 days agotalks.biogo.googlecode.com - Another good lecture for Illumina sequencing data analysis from Dan Kortschak, Bioinformatics Group, School of Molecular and Biomedical Science ,The University of Adelaide
