In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used Evolution Highway (RH) http://eh-demo.ncsa.uiuc.edu/, which is a collaborative project designed to provide a visual means for simultaneously comparing genomes of multiple amniote species. The tool removes the burden of manually aligning these maps and allows cognitive skills to be used toward something more valuable than preparation and transformation of data. In addition to EH, attractive Circos (http://circos.ca/) is also very popular for this kind of analysis.

The EH is available online, and can be easily access and use, whereas Circos installation is not entirely straightforward. One of the most difficult parts of the installation involves installing the GD library. Since there weren't good instructions for installing this library on the internet I decided to post instructions here in case they are useful to anyone else.

Following are the steps to install GD modules in Mac OS

1. Setup

Create a folder for the files:

$ mkdir -p /SourceCache
$ cd /SourceCache

Get and unpack the required Jpeg-6b and GD libraries:
Download Jpeg-6b (http://code.google.com/p/google-desktop-for-linux-mirror/downloads/detail?name=jpeg-6b.tar.gz&can=2&q)
Download GD (http://search.cpan.org/~lds/GD-2.46/)

Place the "tar.gz" files in "/SourceCache" and double click to unpack.

2. Install libjpeg

Copy the "config.sub" and "config.guess" files to "/SourceCache". Note that your "config.sub" and ""config.guess" files may be in a slightly different location. The commands below show where they were on my machine:

$ cd /SourceCache/jpeg-6b/src
$ cp /usr/share/libtool/config/config.sub .
$ cp /usr/share/libtool/config/config.guess .

Configure libjpeg as follows. Note that this was installed on a 64 bit machine. However, this method may configure it in a 32 bit format. This may not be the best way to configure the installation but it works.

$ .configure --enable-shared
$ make

Check to see if the following directories exist on your machine. Create the missing directories in the following manner:

$ mkdir -p /usr/local/include
$ mkdir -p /usr/local/bin
$ mkdir -p /usr/local/lib
$ mkdir -p /usr/local/man/man1

Finish making and installing libjpeg:

$ make install

3. Install GD

$ cd /SourceCache/GD-2.46/GD/
$ perl Makefile.PL
$ make
$ make test (optional)
$ make html (optional)
$ make install

Other way for Mac OS
The easiest way to get a lot of these is with a program called Fink, which is similar in nature to the CPAN installer, but installs common GNU utilities. Fink is available from <http://sourceforge.net/projects/fink/>.

Follow the instructions for setting up Fink. Once it's installed, you'll want to run the following as root: fink install gd

It will prompt you for a number of dependencies, type 'y' and hit enter to install all of the dependencies. Then watch it work.

To prevent creating conflicts with the software that Apple installs by default, Fink creates its own directory tree at /sw where it installs most of the software that it installs. This means your libraries and headers for libgd will be at /sw/lib and /sw/include instead of /usr/lib and /usr/local/include. Because of these changed locations for the libraries, the Perl GD module will not install directly via CPAN, because it looks for the specific paths instead of getting them from your environment. But there's a way around that :-)

Instead of typing "install GD" at the cpan> prompt, type look GD. This should go through the motions of downloading the latest version of the GD module, then it will open a shell and drop you into the build directory. Apply below patch to the Makefile.PL file (save the patch into a file and use the command patch < patchfile.)

Then, run these commands to finish the installation of the GD module:

perl Makefile.PL
make
make test
make install
And don't forget to run exit to get back to CPAN.

Install on MS Window, using PPM

C:\Documents and Settings\Owner>ppm
PPM interactive shell (2.2.0) - type 'help' for available commands.
PPM> install GD
Install package 'GD?' (y/N): y
Installing package 'GD'...
Downloading http://ppm.ActiveState.com/PPMPackages/5.6plus/MSW. ...
Installing C:\Perl\site\lib\auto\GD\GD.bs
Installing C:\Perl\site\lib\auto\GD\GD.dll
Installing C:\Perl\site\lib\auto\GD\GD.exp
Installing C:\Perl\site\lib\auto\GD\GD.lib
Installing C:\Perl\html\site\lib\GD.html
Installing C:\Perl\site\lib\GD.pm
Installing C:\Perl\site\lib\qd.pl
Installing C:\Perl\site\lib\auto\GD\autosplit.ix
PPM>


If you can't install it from ppm. You can download it:
http://ppm.ActiveState.com/PPMPackages/5.6plus/MSW.


BTW,All Perl 5.6.1 Modules are located at:

http://ppm.ActiveState.com/PPMPackages/5.6plus/MSW.

Install the Perl GD Module on Linux

$ sudo perl -MCPAN -e shell

Since it was the first time I had run this command on this particular machine I had to answer a lot of questions but simply selected the defaults for everything as this usually works for me. Once in the CPAN shell I entered

$ install Bundle::CPAN

and selected all of the defaults again. Once the CPAN bundle had finished installing I tried to install GD::Graph by typing

$ install GD::Graph

but it failed with hundreds of errors – the first of which was

GD.xs:7:16: error: gd.h: No such file or directory

This was fixed with the following apt-get command (in the bash shell)

$ sudo apt-get install libgd2-xpm-dev

back in the CPAN shell I still couldn’t get GD::Graph to build and I guessed this was because of some left over files from the failed build. I don’t know the command to clean things up inside the CPAN shell and am too lazy to read the docs so I simply went into the .cpan/build directory in my home directory and deleted anything that started with GD – eg

$ rm -rf GD-2.35-HC_vkB

$ rm -rf GDGraph-1.44-Evfibe

and so on. Those strings at the end (VkB and so on) look random so they might be different on your machine. Then I went back into the CPAN shell and ran

$ install GD::Graph

There were a few dependencies which the script fetched and installed for me but everything worked smoothly.

Manual and other Perl Module instalation are mentioned in my previous blog @ http://bioinformaticsonline.com/blog/view/710/how-to-install-perl-modules-manually-using-cpan-command-and-other-quick-ways

• -e Makes the line of code be executed instead of a script
• -n Forces your line to be called in a loop. Allows you to take lines from the diamond operator (or stdin)
• -p Forces your line to be called in a loop. Prints $_ at the end

• This counts the number of quotation marks in each line and prints it

  perl -ne '$cnt = tr/"//;print "$cnt\n"' inputFileName.txt

• Adds string to each line, followed by tab

  perl -pe 's/(.*)/string\t$1/' inFile > outFile

• Append a new line to each line

  perl -pe 's//\n/' all.sent.classOnly > all.sent.classOnly.sep

• Replace all occurrences of pattern1 (e.g. [0-9]) with pattern2

  perl -p -i.bak -w -e 's/pattern1/pattern2/g' inputFile

• Go through file and only print words that do not have any uppercase letters.

  perl -ne 'print unless m/[A-Z]/' allWords.txt > allWordsOnlyLowercase.txt

• Go through file, split line at each space and print words one per line.

  perl -ne 'print join("\n", split(/ /,$_));print("\n")' someText.txt > wordsPerLine.txt

• or in other words, delete every character that is not a letter, white space or line end (replace with nothing)

  perl -pne 's/[^a-zA-Z\s]*//g' text_withSpecial.txt > text_lettersOnly.txt

• perl -pne 'tr/[A-Z]/[a-z]/' textWithUpperCase.txt > textwithoutuppercase.txt;

• Print only the second column of the data when using tabular as a separator

  perl -ne '@F = split("\t", $_); print "$F[1]";' columnFileWithTabs.txt > justSecondColumn.txt

• One-Liner: Sort lines by their length

  perl -e 'print sort {length $a <=> length $b} <>' textFile

• One-Liner: Print second column, unless it contains a number

  perl">perl -lane 'print $F[1] unless $F[1] =~ m/[0-9]/' wordCounts.txt

For those familiar with Trellis Display, faceting in ggplot, or the notion of small multiples, Trelliscope provides a scalable way to break a set of data into pieces, apply a plot method to each piece, and then arrange those plots in a grid and interactively sort, filter, and query panels of the display based on metrics of interest. With Trelliscope, we are able to create multipanel displays on data with a very large number of subsets and view them in an interactive and meaningful way.

Address of the bookmark: http://deltarho.org/docs-trelliscope/#introduction

This is a short post giving steps on how to actually install R packages. Let’s suppose you want to install the ggplot2 package. Well nothing could be easier. We just fire up an R shell and type:

> install.packages("ggplot2")

In theory the package should just install, however:

• if you are using Linux and don’t have root access, this command won’t work.
• you will be asked to select your local mirror, i.e. which server should you use to download the package.

Installing packages without root access

First, you need to designate a directory where you will store the downloaded packages. On my machine, I use the directory /data/Rpackages/ After creating a package directory, to install a package we use the command:

> install.packages("ggplot2", lib="/data/Rpackages/")
> library(ggplot2, lib.loc="/data/Rpackages/")


It’s a bit of a pain having to type /data/Rpackages/ all the time. To avoid this burden,  we create a file .Renviron in our home area, and add the line R_LIBS=/data/Rpackages/ to it. This means that whenever you start R, the directory /data/Rpackages/ is added to the list of places to look for R packages and so:

> install.packages("ggplot2")
> library(ggplot2)

just works!

Setting the repository

Every time you install a R package, you are asked which repository R should use. To set the repository and avoid having to specify this at every package install, simply:

• create a file .Rprofile in your home area.
• Add the following piece of code to it:


cat(".Rprofile: Setting UK repositoryn")
r = getOption("repos") # hard code the UK repo for CRAN
r["CRAN"] = "http://cran.uk.r-project.org"
options(repos = r)
rm(r)


I found this tip in a stackoverflow answer .

Unpack the distribution with this command:

tar xvzf ImageMagick.tar.gz

Next configure and compile ImageMagick. Note the pkg-config script is required so that ImageMagick can find certain optional delegate libraries on your system. To configure, type:

$ cd ImageMagick-7.0.8
$ ./configure
$ make

If ImageMagick configured and compiled without complaint, you are ready to install it on your system. Administrator privileges are required to install. To install, type

sudo make install

You may need to configure the dynamic linker run-time bindings:

sudo ldconfig /usr/local/lib

Finally, verify the ImageMagick install worked properly, type

/usr/local/bin/convert logo: logo.gif

For a more comprehensive test, run the ImageMagick validation suite. Ghostscript is a prerequisite, otherwise the EPS, PS, and PDF tests will fail.

make check

Congratulations, you have a working ImageMagick distribution and you are ready to use ImageMagick to convert, compose, or edit your images or perhaps you'll want to use one of the Application Program Interfaces for C, C++, Perl, and others.

The above instructions will satisfy a great number of ImageMagick users, but we suspect a few will have additional questions or problems to consider. For example, what does one do if ImageMagick fails to configure or compile? Or what if you don't have administrator privileges and what if you don't want to install ImageMagick in the default /../usr/local folder? You will find the answer to these questions, and more, in Advanced Unix Source Installation.

jitendra@jitendra-UNLOCK-INSTALL[Downloads] git clone https://github.com/ImageMagick/ImageMagick.git []
Cloning into 'ImageMagick'...
remote: Counting objects: 124593, done.
remote: Compressing objects: 100% (77/77), done.
remote: Total 124593 (delta 94), reused 94 (delta 64), pack-reused 124452
Receiving objects: 100% (124593/124593), 76.94 MiB | 24.07 MiB/s, done.
Resolving deltas: 100% (106498/106498), done.
Checking connectivity... done.
jitendra@jitendra-UNLOCK-INSTALL[Downloads] cd ImageMagick []
jitendra@jitendra-UNLOCK-INSTALL[ImageMagick] make []
make: *** No targets specified and no makefile found. Stop.
jitendra@jitendra-UNLOCK-INSTALL[ImageMagick] ./configure []
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '1000' is supported by ustar format... yes
checking whether GID '1000' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... (cached) yes
configuring ImageMagick 7.0.8-3
checking whether build environment is sane... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
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checking dependency style of gcc... gcc3
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checking how to run the C preprocessor... gcc -E
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checking if malloc debugging is wanted... no
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checking pkg-config is at least version 0.20... yes
checking size of size_t... 8
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./configure: line 9486: AX_COMPILER_FLAGS: command not found
checking CFLAGS for maximum warnings... (cached) -Wall
checking if LD -Wl,--version-script works... yes
checking for linker lazyload option... none
checking whether gcc is Clang... no
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checking whether more special flags are required for pthreads... no
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checking for joinable pthread attribute... (cached) PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... (cached) no
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checking whether we are using the Microsoft C compiler... no
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checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
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checking for strip... strip
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checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
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checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
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checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for shl_load... no
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checking whether stripping libraries is possible... yes
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checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
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checking if g++ PIC flag -fPIC -DPIC works... yes
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checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether to enable maintainer-specific portions of Makefiles... no
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checking for library containing opendir... none required
checking arm/limits.h usability... no
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checking size of float_t... 4
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checking size of unsigned int*... 8
checking for signed 8-bit type... signed char
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checking for unsigned maximum type... unsigned long
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checking whether our compiler supports __func__... yes
checking whether closedir returns void... no
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checking for floor... yes
checking for fork... (cached) yes
checking for ftime... yes
checking for ftruncate... yes
checking for getc_unlocked... yes
checking for getcwd... yes
checking for getpid... yes
checking for getexecname... no
checking for getdtablesize... yes
checking for getpagesize... (cached) yes
checking for getrlimit... yes
checking for getrusage... yes
checking for gettimeofday... yes
checking for gmtime_r... yes
checking for isnan... yes
checking for j0... yes
checking for j1... yes
checking for lltostr... no
checking for localtime_r... yes
checking for lstat... yes
checking for memmove... yes
checking for memset... yes
checking for mkstemp... yes
checking for munmap... yes
checking for nanosleep... yes
checking for newlocale... yes
checking for _NSGetExecutablePath... no
checking for pclose... yes
checking for _pclose... no
checking for poll... yes
checking for popen... yes
checking for _popen... no
checking for posix_fadvise... yes
checking for posix_fallocate... yes
checking for posix_madvise... yes
checking for posix_memalign... yes
checking for posix_spawnp... yes
checking for pow... yes
checking for pread... yes
checking for pwrite... yes
checking for qsort_r... yes
checking for raise... yes
checking for rand_r... yes
checking for readlink... yes
checking for realpath... yes
checking for select... yes
checking for seekdir... yes
checking for sendfile... yes
checking for setlocale... yes
checking for socket... yes
checking for sqrt... yes
checking for setvbuf... yes
checking for stat... yes
checking for strchr... yes
checking for strrchr... yes
checking for strcspn... yes
checking for strdup... yes
checking for strpbrk... yes
checking for strspn... yes
checking for strstr... yes
checking for strtod... (cached) yes
checking for strtod_l... yes
checking for strtol... yes
checking for strtoul... yes
checking for symlink... yes
checking for sysconf... yes
checking for sigemptyset... yes
checking for sigaction... yes
checking for spawnvp... no
checking for strerror... yes
checking for strlcat... no
checking for strlcpy... no
checking for strcasecmp... yes
checking for strncasecmp... yes
checking for telldir... yes
checking for tempnam... yes
checking for times... yes
checking for ulltostr... no
checking for uselocale... yes
checking for usleep... yes
checking for utime... yes
checking for vfprintf... yes
checking for vfprintf_l... no
checking for vsprintf... yes
checking for vsnprintf... yes
checking for vsnprintf_l... no
checking for waitpid... yes
checking for _wfopen... no
checking for _wstat... no
checking for library containing clock_gettime... none required
checking whether clock_gettime supports CLOCK_REALTIME... yes
checking whether pread is declared... yes
checking whether pwrite is declared... yes
checking whether strlcpy is declared... no
checking whether vsnprintf is declared... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) gcc3
checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking if g++ supports namespace std... yes
checking whether the compiler supports ISO C++ standard library... yes
checking for g++ option to support OpenMP... -fopenmp
checking whether C++ compiler is sufficient for Magick++... yes
checking for X11 configure files...
checking for GOMP_parallel_start in -lgomp... yes
-------------------------------------------------------------
checking for BZLIB...
checking bzlib.h usability... no
checking bzlib.h presence... no
checking for bzlib.h... no
checking for BZ2_bzDecompress in -lbz2... no
checking if BZLIB package is complete... no
checking for X... libraries , headers
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
-------------------------------------------------------------
checking for X11...
checking for shmctl... yes
checking for XShmAttach in -lXext... yes
checking for XShapeCombineMask in -lXext... yes
checking for XtSetEventDispatcher in -lXt... yes
-------------------------------------------------------------
checking for ZLIB... yes

-------------------------------------------------------------
checking for DPS...
checking DPS/dpsXclient.h usability... no
checking DPS/dpsXclient.h presence... no
checking for DPS/dpsXclient.h... no
checking for DPSInitialize in -ldps... no
checking for DPSInitialize in -ldps... no
checking for XDPSPixelsPerPoint in -ldpstk... no
checking if DPS package is complete... no
-------------------------------------------------------------
checking for fftw3... no

-------------------------------------------------------------
checking for FLIF...
checking flif.h usability... no
checking flif.h presence... no
checking for flif.h... no
checking for flif_create_decoder in -lflif... no
checking if FLIF package is complete... no
-------------------------------------------------------------
checking for FlashPIX...
checking fpxlib.h usability... no
checking fpxlib.h presence... no
checking for fpxlib.h... no
checking for FPX_OpenImageByFilename in -lfpx... no
checking if FlashPIX package is complete... no
-------------------------------------------------------------
checking for ddjvuapi... no

-------------------------------------------------------------
checking for FONTCONFIG... yes

-------------------------------------------------------------
checking for FREETYPE... yes

-------------------------------------------------------------
checking for RAQM... no

-------------------------------------------------------------
checking for GVC... no

-------------------------------------------------------------
checking for HEIF... no

-------------------------------------------------------------
checking for JBIG...
checking jbig.h usability... yes
checking jbig.h presence... yes
checking for jbig.h... yes
checking for jbg_dec_init in -ljbig... yes
checking if JBIG package is complete... yes
-------------------------------------------------------------
checking for JPEG...
checking jconfig.h usability... yes
checking jconfig.h presence... yes
checking for jconfig.h... yes
checking jerror.h usability... yes
checking jerror.h presence... yes
checking for jerror.h... yes
checking jmorecfg.h usability... yes
checking jmorecfg.h presence... yes
checking for jmorecfg.h... yes
checking jpeglib.h usability... yes
checking jpeglib.h presence... yes
checking for jpeglib.h... yes
checking for jpeg_read_header in -ljpeg... yes
checking for JPEG library is version 6b or later... yes
checking if JPEG package is complete... yes
-------------------------------------------------------------
checking for LCMS2... no

-------------------------------------------------------------
checking for LIBOPENJP2... no

-------------------------------------------------------------
checking for LQR... no

-------------------------------------------------------------
checking for LZMA... yes

-------------------------------------------------------------
checking for OPENEXR... no

-------------------------------------------------------------
checking for PANGO... yes

checking for PANGO... yes

-------------------------------------------------------------
checking for PNG... yes

-------------------------------------------------------------
checking for RAW_R... no

-------------------------------------------------------------
checking for TIFF...
checking tiff.h usability... yes
checking tiff.h presence... yes
checking for tiff.h... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking for TIFFClientOpen in -ltiff... yes
checking for TIFFIsByteSwapped in -ltiff... yes
checking for TIFFReadRGBATile in -ltiff... yes
checking for TIFFReadRGBAStrip in -ltiff... yes
checking if TIFF package is complete... yes
checking tiffconf.h usability... yes
checking tiffconf.h presence... yes
checking for tiffconf.h... yes
checking for TIFFIsCODECConfigured... yes
checking for TIFFMergeFieldInfo... yes
checking for TIFFIsBigEndian... yes
checking for TIFFReadEXIFDirectory... yes
checking for TIFFSetErrorHandlerExt... yes
checking for TIFFSetTagExtender... yes
checking for TIFFSetWarningHandlerExt... yes
checking for TIFFSwabArrayOfTriples... yes
-------------------------------------------------------------
checking for WEBP... no
checking for WEBPMUX... no

checking for WMF support ...
checking for libwmf/ipa.h... no
checking if WMF package is complete ... no
-------------------------------------------------------------
checking for XML... yes

-------------------------------------------------------------
checking for ImageMagick delegate programs...
checking for bpgdec... bpgdec
checking for bpgenc... bpgenc
checking for blender... blender
checking for xdg-open... /usr/bin/xdg-open
checking for ufraw-batch... ufraw-batch
checking for soffice... /usr/bin/soffice
checking for dvips... /usr/bin/dvips
checking for magick... magick
checking for magick... magick
checking for xterm... /usr/bin/xterm
checking for dot... /usr/bin/dot
checking for hp2xx... hp2xx
checking for html2ps... html2ps
checking for ilbmtoppm... /usr/bin/ilbmtoppm
checking for ppmtoilbm... /usr/bin/ppmtoilbm
checking for JxrDecApp... JxrDecApp
checking for JxrEncApp... JxrEncApp
checking for lepton... lepton
checking for lp... /usr/bin/lp
checking for lpr... /usr/bin/lpr
checking for gimp... /usr/bin/gimp
checking for magick... magick
checking for avconv... avconv
checking for ffmpeg... (cached) avconv
checking for avconv... avconv
checking for ffmpeg... (cached) avconv
checking for mrsidgeodecode... mrsidgeodecode
checking for mv... /bin/mv
checking for pcl6... pcl6
checking for gsx... no
checking for gsc... no
checking for gs... /usr/bin/gs
checking for rm... /bin/rm
checking for rsvg-convert... rsvg-convert
checking for inkscape... inkscape
checking for uniconvertor... uniconvertor
checking for dwebp... dwebp
checking for cwebp... cwebp
checking for curl... /usr/bin/curl
checking for gxps... gxps
checking for Apple fonts directory... not found!
checking for Dejavu fonts directory... not found!
checking for Ghostscript fonts directory... /usr/share/fonts/type1/gsfonts/
checking for URW-base35 fonts directory... not found!
checking for Windows fonts directory... not found!
checking for gnutar... no
checking for gtar... no
checking for tar... tar
checking for perl... perl
checking for rpmbuild... no
checking for rpm... no
checking for 7za... 7za
checking for zip... zip
-------------------------------------------------------------
checking for Ghostscript...
checking for Ghostscript version... 9.18
checking for gs color device... pnmraw
checking for gs alpha device... pngalpha
checking for gs CMYK device... pamcmyk32
checking for gs mono device... pbmraw
checking for gs PDF writing device... pdfwrite
checking for gs PS writing device... ps2write
checking for gs EPS writing device... eps2write
-------------------------------------------------------------
Update ImageMagick configuration
checking that generated files are newer than configure... done
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating common.shi
config.status: creating config/configure.xml
config.status: creating config/delegates.xml
config.status: creating config/ImageMagick.rdf
config.status: creating config/MagickCore.dox
config.status: creating config/MagickWand.dox
config.status: creating config/Magick++.dox
config.status: creating config/type-apple.xml
config.status: creating config/type-dejavu.xml
config.status: creating config/type-ghostscript.xml
config.status: creating config/type-urw-base35.xml
config.status: creating config/type-windows.xml
config.status: creating config/type.xml
config.status: creating ImageMagick.spec
config.status: creating Magick++/bin/Magick++-config
config.status: creating MagickCore/ImageMagick.pc
config.status: creating Magick++/lib/Magick++.pc
config.status: creating MagickCore/MagickCore-config
config.status: creating MagickCore/MagickCore.pc
config.status: creating MagickCore/version.h
config.status: creating Makefile
config.status: creating magick.sh
config.status: creating PerlMagick/check.sh
config.status: creating PerlMagick/default/Magick.pm
config.status: creating PerlMagick/Makefile.PL
config.status: creating PerlMagick/default/Makefile.PL
config.status: creating PerlMagick/quantum/Makefile.PL
config.status: creating PerlMagick/quantum/quantum.pm
config.status: creating PerlMagick/quantum/quantum.xs
config.status: creating PerlMagick/quantum/typemap
config.status: creating utilities/animate.1
config.status: creating utilities/compare.1
config.status: creating utilities/composite.1
config.status: creating utilities/conjure.1
config.status: creating utilities/convert.1
config.status: creating utilities/display.1
config.status: creating utilities/identify.1
config.status: creating utilities/ImageMagick.1
config.status: creating utilities/import.1
config.status: creating utilities/magick.1
config.status: creating utilities/magick-script.1
config.status: creating utilities/mogrify.1
config.status: creating utilities/montage.1
config.status: creating utilities/stream.1
config.status: creating MagickWand/MagickWand-config
config.status: creating MagickWand/MagickWand.pc
config.status: creating config/config.h
config.status: executing MagickCore/magick-baseconfig.h commands
config.status: creating MagickCore/magick-baseconfig.h - prefix MAGICKCORE for config/config.h defines
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing default commands
config.status: executing magick.sh.in commands
config.status: executing MagickCore-config.in commands
config.status: executing MagickWand-config.in commands
config.status: executing Magick++-config.in commands
config.status: executing PerlMagick/check.sh.in commands
configure:
==============================================================================
ImageMagick is configured as follows. Please verify that this configuration
matches your expectations.

Host system type: x86_64-pc-linux-gnu
Build system type: x86_64-pc-linux-gnu

Option Value
------------------------------------------------------------------------------
Shared libraries --enable-shared=yes yes
Static libraries --enable-static=yes yes
Build utilities --with-utilities=yes yes

 

/usr/bin/install -c -m 644 ./www/api/MagickCore/tab_l.gif /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/tab_r.gif /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/tabs.css /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/threshold_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/threshold_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/threshold_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/timer_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/timer_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/timer_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/token_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/token_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/token_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/transform_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/transform_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/transform_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/tree.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/type_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/type_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/type_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/utility_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/utility_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/utility_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/version_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/version_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/version_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/vms_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/vms_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/vms_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/widget_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/widget_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/widget_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/xml-tree_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/xml-tree_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/xml-tree_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/xwindow_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/xwindow_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/xwindow_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/xwindow-private_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
/usr/bin/install -c -m 644 ./www/api/MagickCore/xwindow-private_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickCore
mkdir -p -- /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/animate_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/animate_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/animate_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/annotated.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/classes.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/compare_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/compare_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/compare_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/composite_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/composite_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/composite_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/conjure_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/conjure_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/conjure_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/convert_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/convert_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/convert_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/deprecate_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/deprecate_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/deprecate_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/dir_101f7ac0a894e32543a314e85b2e1524.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/dirs.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/display_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/display_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/display_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/doxygen.css /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/doxygen.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/drawing-wand_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/drawing-wand_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/drawing-wand_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/drawtest_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/files.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2blank.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2doc.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2folderclosed.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2folderopen.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2lastnode.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2link.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2mlastnode.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2mnode.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2node.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2plastnode.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2pnode.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/ftv2vertline.png /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/functions.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/functions_vars.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x61.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x62.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x63.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x64.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x65.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x67.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x69.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x6d.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x6e.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x6f.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x70.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x71.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x72.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x73.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x74.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x75.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x77.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_0x78.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_defs.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_enum.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_eval.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_func_0x63.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_func_0x64.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_func_0x67.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_func_0x69.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_func_0x6d.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_func_0x6e.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_func_0x70.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_func_0x72.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_func_0x73.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_func.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_type.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/globals_vars.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/identify_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/identify_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/identify_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/import_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/import_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/import_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/index.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick-image_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick-image_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick-image_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick-property_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick-property_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick-property_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick-wand_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick__wand_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick-wand_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/MagickWand_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick__wand_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick-wand_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/MagickWand_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick-wand-private_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/magick-wand-private_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/main.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/mogrify_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/mogrify_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/mogrify_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/mogrify-private_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/mogrify-private_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/montage_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/montage_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/montage_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/pixel-iterator_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/pixel-iterator_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/pixel-iterator_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/pixel-wand_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/pixel-wand_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/pixel-wand_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/pixel-wand-private_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/pixel-wand-private_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/stream_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/stream_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/stream_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/struct__CompositeOptions.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/struct__DrawingWand.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/struct__DrawVTable.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/struct__MagickWand.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/struct__PixelIterator.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/struct__PixelWand.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/studio_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/studio_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/tab_b.gif /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/tab_l.gif /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/tab_r.gif /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/tabs.css /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/tree.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/wand_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/wand_8h.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/wand_8h-source.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/usr/bin/install -c -m 644 ./www/api/MagickWand/wandtest_8c.html /usr/local/share/doc/ImageMagick-7/www/api/MagickWand
/bin/mkdir -p '/usr/local/share/doc/ImageMagick-7'
/usr/bin/install -c -m 644 LICENSE ChangeLog NEWS.txt '/usr/local/share/doc/ImageMagick-7'
/bin/mkdir -p '/usr/local/include/ImageMagick-7/Magick++'
/usr/bin/install -c -m 644 Magick++/lib/Magick++/Blob.h Magick++/lib/Magick++/CoderInfo.h Magick++/lib/Magick++/Color.h Magick++/lib/Magick++/Drawable.h Magick++/lib/Magick++/Exception.h Magick++/lib/Magick++/Functions.h Magick++/lib/Magick++/Geometry.h Magick++/lib/Magick++/Image.h Magick++/lib/Magick++/Include.h Magick++/lib/Magick++/Montage.h Magick++/lib/Magick++/Pixels.h Magick++/lib/Magick++/ResourceLimits.h Magick++/lib/Magick++/SecurityPolicy.h Magick++/lib/Magick++/Statistic.h Magick++/lib/Magick++/STL.h Magick++/lib/Magick++/TypeMetric.h '/usr/local/include/ImageMagick-7/Magick++'
/bin/mkdir -p '/usr/local/include/ImageMagick-7'
/usr/bin/install -c -m 644 Magick++/lib/Magick++.h '/usr/local/include/ImageMagick-7'
/bin/mkdir -p '/usr/local/share/man/man1'
/usr/bin/install -c -m 644 MagickCore/MagickCore-config.1 MagickWand/MagickWand-config.1 Magick++/bin/Magick++-config.1 utilities/ImageMagick.1 utilities/animate.1 utilities/compare.1 utilities/composite.1 utilities/conjure.1 utilities/convert.1 utilities/display.1 utilities/identify.1 utilities/import.1 utilities/magick.1 utilities/magick-script.1 utilities/mogrify.1 utilities/montage.1 utilities/stream.1 '/usr/local/share/man/man1'
/bin/mkdir -p '/usr/local/lib/pkgconfig'
/usr/bin/install -c -m 644 MagickCore/ImageMagick.pc MagickCore/MagickCore.pc MagickCore/ImageMagick-7.Q16HDRI.pc MagickCore/MagickCore-7.Q16HDRI.pc MagickWand/MagickWand.pc MagickWand/MagickWand-7.Q16HDRI.pc Magick++/lib/Magick++.pc Magick++/lib/Magick++-7.Q16HDRI.pc '/usr/local/lib/pkgconfig'
make[2]: Leaving directory '/home/jitendra/Downloads/ImageMagick'
make[1]: Leaving directory '/home/jitendra/Downloads/ImageMagick'
jitendra@jitendra-UNLOCK-INSTALL[ImageMagick] []

The main purpose of OSDDLinux is to provide an in silico platform for computer-aided drug design. This is a collection and compilation of large number of software and web services which will be directly or indirectly useful for researches working in the field of drug design/discovery. Overall objective of OSDDlinux is to promote open source in drug discovery, crowdsourcing and network based collobrations. Following are major features of OSDDlinux ... 

Find more @ http://osddlinux.osdd.net/index.php

Screen is like a window manager for your console. It will allow you to keep multiple terminal sessions running and easily switch between them. It also protects you from disconnection, because the screen session doesn’t end when you get disconnected.

You’ll need to make sure that screen is installed on the server you are connecting to. If that server is Ubuntu or Debian, just use this command:

sudo apt-get install screen

Now you can start a new screen session by just typing screen at the command line. You’ll be shown some information about screen. Hit enter, and you’ll be at a normal prompt.

To disconnect (but leave the session running)

Hit Ctrl + A and then Ctrl + D in immediate succession. You will see the message [detached]

To reconnect to an already running session

screen -r

To reconnect to an existing session, or create a new one if none exists

screen -D -r

To create a new window inside of a running screen session

Hit Ctrl + A and then C in immediate succession. You will see a new prompt.

To switch from one screen window to another

Hit Ctrl + A and then Ctrl + A in immediate succession.

To list open screen windows

Hit Ctrl + A and then W in immediate succession

Tasks:  239 total,   1 running,  238 sleeping,   0 stopped,   0 zombie

This line tells you how many processes are running. If you are using laptops machines it’s not so interesting because you really are the only one using this machine.

Cpu(s):  0.0%us,  0.0%sy,  0.0%ni,100.0%id,  0.0%wa,  0.0%hi,  0.0%si,  0.0%st

This line contains the CPU load. The first two numbers are how busy the system is doing computation (“us” stands for “user”) and how busy the system is doing system-y things like accessing disks or network (“sy” stands for “system”). We’ll talk more about this later.

Mem:   49457320k total,    3492174k used,  14535596k free,    1435148k buffers

This should be easy to understand – how much memory you’re using!

Swap:   539356k total,   28332k used,   836562k free,    29862014k cached

Swap is just on-disk memory that can be used to “swap” out programs from main memory. Again, we’ll talk about this later.:

PID USER      PR  NI  VIRT  RES  SHR S %CPU %MEM    TIME+  COMMAND
  1 root      39   19  0  0  0 S  0.0  0.0   246:57.22 kipmi0
  2 root      RT   0     0    0    0 S  0.0  0.0   0:00.00 migration/0

And... finally! What’s actually running! The two most important numbers are the %CPU and %MEM towards the right, as well as the COMMAND. This tells you how compute- and memory-intensive your program is. Right now, nothing’s running so the numbers aren’t very interesting, but just wait until we run something...

Then I thaught it migh be a problem of graphical display and I opened the terminal out of curiosity, and I found out that there is no ~/Desktop folder at all. What happened? What do I need to do?

Then I google the problem and found this is a very common problem after updates. To fix this problem, follow these steps:

You need to edit the ~/.config/user-dirs.dirs file, and make sure the contents of the file are like the following:

XDG_DESKTOP_DIR="$HOME/Desktop"
XDG_DOWNLOAD_DIR="$HOME/Downloads"
XDG_TEMPLATES_DIR="$HOME/"
XDG_PUBLICSHARE_DIR="$HOME/Share"
XDG_DOCUMENTS_DIR="$HOME/Documents"
XDG_MUSIC_DIR="$HOME/Music"
XDG_PICTURES_DIR="$HOME/Pictures"
XDG_VIDEOS_DIR="$HOME/Videos"

Then restart nautilus:

killall nautilus

or

nautilus -q

Then, open nautilus via Unity menu (press the Super key) or using the run command (Alt+F2)

Address of the bookmark: https://github.com/ventoy/Ventoy