<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/35252?offset=250 https://bioinformaticsonline.com/bookmarks/view/44661/lovis4u-locus-visualisation-tool-for-comparative-genomics Tue, 17 Sep 2024 02:30:57 -0500 https://bioinformaticsonline.com/bookmarks/view/44661/lovis4u-locus-visualisation-tool-for-comparative-genomics <![CDATA[LoVis4u: Locus Visualisation tool for comparative genomics]]> image

Description

LoVis4u is a bioinformatics tool for Loci Visualisation.

LoVis4u, a command-line tool and Python API designed for highly customizable and fast visualisation of multiple genomic loci. LoVis4u generates vector images in PDF format based on annotation data from GenBank or GFF files. It is capable of visualising entire genomes of bacteriophages as well as plasmids and user-defined regions of longer prokaryotic genomes. Additionally, LoVis4u offers optional data processing steps to identify and highlight accessory and core genes in input sequences.

https://art-egorov.github.io/lovis4u/

 

Address of the bookmark: https://github.com/art-egorov/lovis4u

]]> LEGE https://bioinformaticsonline.com/bookmarks/view/44892/grannot Sun, 31 Aug 2025 06:21:50 -0500 https://bioinformaticsonline.com/bookmarks/view/44892/grannot <![CDATA[GrAnnoT]]> GrAnnoT is an annotation transfer tool for pangenome graphs. It can transfer linear genome annotations to a pangenome graph containing the genome, and also transfer the pangenome graph's annotations on the genomes it contains. It also outputs complementary information such as the alignments of the transfered genes, or a presence-absence matrix.

Address of the bookmark: https://forge.ird.fr/diade/dynadiv/grannot

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