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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/35764?offset=40</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33592/circular-plots-in-r</guid>
	<pubDate>Mon, 19 Jun 2017 06:20:27 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33592/circular-plots-in-r</link>
	<title><![CDATA[Circular plots in R]]></title>
	<description><![CDATA[<div>
<p><strong>Circular plots</strong>&nbsp;are useful to represent complicated informations. They are used in 2 specific cases: when you have long axis and numerous categories, and when you want to show relationships between elements. The&nbsp;<a href="http://circos.ca/images/samples/" target="_blank">circos gallery</a>&nbsp;displays several examples of circular plots, what gives a nice overview of the possibilities. Circos is the most famous</p>
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<p>tool to create circular plots. Thanks to&nbsp;<a href="https://www.linkedin.com/in/zuguanggu" target="_blank">Zuguang Gu</a>, the&nbsp;<a href="https://cran.r-project.org/web/packages/circlize/vignettes/circlize.pdf" target="_blank">Circlize library</a>&nbsp;makes the circos functions available in R! It implements low-level graphic functions for adding common graphics in a circular layout. This page aims to learn you how to use the library, so I strongly advise to read the graphics in the proposed order!</p>
<p><img src="http://www.r-graph-gallery.com/wp-content/uploads/2016/03/122_Circlize_package.png" width="480" height="480" alt="image" style="border: 0px;"></p>
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<p>http://www.r-graph-gallery.com/portfolio/circular-plot/</p><p>Address of the bookmark: <a href="http://www.r-graph-gallery.com/portfolio/circular-plot/" rel="nofollow">http://www.r-graph-gallery.com/portfolio/circular-plot/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44288/upset-plots</guid>
	<pubDate>Fri, 24 Mar 2023 22:30:23 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44288/upset-plots</link>
	<title><![CDATA[Upset plots !]]></title>
	<description><![CDATA[<p>Upset plots are a type of visualization used to analyze the intersection of sets or categories. They are particularly useful for displaying data with multiple categories and analyzing their overlaps.</p>
<p>In an upset plot, each row represents a category or set, and each column represents a data point. The length of the bar for each category indicates the number of data points that belong to that category. The plot also shows the intersections between categories, represented by overlapping bars.</p>
<p>Upset plots are useful for visualizing complex data with multiple categories and intersections, and can help identify patterns and relationships between categories. They are often used in fields such as bioinformatics, where they can be used to analyze gene expression data or to compare the results of different experimental conditions.</p>
<p>https://jokergoo.github.io/ComplexHeatmap-reference/book/upset-plot.html#example-with-the-genomic-regions</p><p>Address of the bookmark: <a href="https://jokergoo.github.io/ComplexHeatmap-reference/book/upset-plot.html#example-with-the-genomic-regions" rel="nofollow">https://jokergoo.github.io/ComplexHeatmap-reference/book/upset-plot.html#example-with-the-genomic-regions</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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