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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/35805?offset=960</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/44284/tools-for-geospatial-data-analysis</guid>
	<pubDate>Wed, 22 Mar 2023 02:10:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/44284/tools-for-geospatial-data-analysis</link>
	<title><![CDATA[Tools for Geospatial data analysis !]]></title>
	<description><![CDATA[<div><div><div><div><div><div><div><div><div><div><p>Geospatial data is becoming increasingly important in many fields, including urban planning, environmental science, public health, and more. These tools can help you work with data from a variety of sources, including satellite imagery, GPS data, and other forms of spatial data. They can help you visualize data, perform complex analysis, and even create maps and other visualizations.</p><p>The list includes some of the most popular and widely used geospatial tools available in Python. These tools can help you work with data from a variety of sources and in a variety of formats. Some of the tools are focused on visualization, such as Cartopy, Folium, and Contextily, which allow you to create interactive maps and other visualizations. Other tools are more focused on data manipulation and analysis, such as Fiona, GeoPandas, and Rasterio, which allow you to manipulate and analyze spatial data in a variety of ways.</p><p>The list also includes some tools for working with specific types of geospatial data. For example, the H3 library is designed specifically for working with hexagonal grids, while PySAL is focused on spatial econometrics and spatial analysis. Whether you are a data scientist, GIS specialist, or geospatial enthusiast, these tools are sure to enhance your work and help you achieve your goals.</p><p>In summary, this list is an excellent resource for anyone working with geospatial data in Python. It contains a wide range of tools for working with different types of data, and can help you visualize data, perform complex analysis, and create maps and other visualizations. If you're looking to enhance your skills in geospatial analysis, this list is definitely worth checking out.</p></div></div></div><div><p>These tools are:</p><ul>
<li>ArcGIS - <a href="https://lnkd.in/dgC6sKJH" target="_new">https://lnkd.in/dgC6sKJH</a></li>
<li>Cartopy - <a href="https://lnkd.in/dc8ijXRg" target="_new">https://lnkd.in/dc8ijXRg</a></li>
<li>Contextily - <a href="https://lnkd.in/dTdQsmKX" target="_new">https://lnkd.in/dTdQsmKX</a></li>
<li>Descartes - <a href="https://lnkd.in/dCJykxwW" target="_new">https://lnkd.in/dCJykxwW</a></li>
<li>Fiona - <a href="https://lnkd.in/d8sJ3Q5a" target="_new">https://lnkd.in/d8sJ3Q5a</a></li>
<li>Folium - <a href="https://lnkd.in/dfSsE-MB" target="_new">https://lnkd.in/dfSsE-MB</a></li>
<li>GDAL - <a href="https://lnkd.in/dYBJBaAY" target="_new">https://lnkd.in/dYBJBaAY</a></li>
<li>Geohash - <a href="https://lnkd.in/d_NxJ4_M" target="_new">https://lnkd.in/d_NxJ4_M</a></li>
<li>GeoJSON - <a href="https://lnkd.in/daGs2WYq" target="_new">https://lnkd.in/daGs2WYq</a></li>
<li>GeoPandas - <a href="https://lnkd.in/dBTFKKV3" target="_new">https://lnkd.in/dBTFKKV3</a></li>
<li>Geopy - <a href="https://lnkd.in/dfAzR8Xa" target="_new">https://lnkd.in/dfAzR8Xa</a></li>
<li>Gevent - <a href="http://www.gevent.org/" target="_new">http://www.gevent.org</a></li>
<li>H3 - <a href="https://h3geo.org/docs/" target="_new">https://h3geo.org/docs/</a></li>
<li>OSMnx - <a href="https://lnkd.in/dm3pHgUS" target="_new">https://lnkd.in/dm3pHgUS</a></li>
<li>PyQGIS - <a href="https://lnkd.in/dShWyWVr" target="_new">https://lnkd.in/dShWyWVr</a></li>
<li>PySAL - <a href="https://pysal.org/" target="_new">https://pysal.org</a></li>
<li>Pydeck - <a href="https://lnkd.in/dGBFu-iw" target="_new">https://lnkd.in/dGBFu-iw</a></li>
<li>Pyproj - <a href="https://lnkd.in/dNG9fdkm" target="_new">https://lnkd.in/dNG9fdkm</a></li>
<li>RTree - <a href="https://lnkd.in/dURMiYpU" target="_new">https://lnkd.in/dURMiYpU</a></li>
<li>Rasterio - <a href="https://lnkd.in/dEMC6ve6" target="_new">https://lnkd.in/dEMC6ve6</a></li>
<li>Scikit-mobility - <a href="https://lnkd.in/dpHhaX2J" target="_new">https://lnkd.in/dpHhaX2J</a></li>
<li>Shapely - <a href="https://lnkd.in/d568datK" target="_new">https://lnkd.in/d568datK</a></li>
</ul><p>These tools offer a wide range of capabilities for working with geospatial data, from visualizing and manipulating data to performing complex analysis and modeling. Whether you are a data scientist, GIS specialist, or geospatial enthusiast, these tools are sure to enhance your work and help you achieve your goals.</p></div></div></div></div></div></div></div></div>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/43896/list-of-comparative-genomics-resources</guid>
	<pubDate>Tue, 28 Jun 2022 04:08:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/43896/list-of-comparative-genomics-resources</link>
	<title><![CDATA[List of comparative genomics resources !]]></title>
	<description><![CDATA[<div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1096638041"><span>3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes</span></a></div><p>Compare structural and functional annotations of proteins between sequenced genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1100640374"><span>ARED Organism -- expansion of ARED reveals AU-rich element cluster variations between human and mouse</span></a></div><p>View AREs in the human transcriptome and study the comparative genomics of AREs in model organisms.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1234973128"><span>ATGC -- Alignable Tight Genomic Clusters Database</span></a></div><p>Find information about orthologous genes in prokaryotes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174596104"><span>AnimalQTLdb -- a livestock QTL database tool set for positional QTL information mining and beyond</span></a></div><p>Search for publicly available QTL data on livestocks and animal species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL20110518150135"><span>BGDB -- Bovine Genome Database</span></a></div><p>Find information about bovine genomics data.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1229012662"><span>COMPARE -- a multi-organism system for cross-species data comparison and transfer of information</span></a></div><p>A multi-organism web-based resource system designed to easily retrieve, correlate and interpret data across species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1218141952"><span>CONDOR -- COnserved Non-coDing Orthologous Regions</span></a></div><p>A database resource of developmentally associated conserved non-coding elements.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1099057221"><span>CORG -- A database for COmparative Regulatory Genomics</span></a></div><p>Delineate conserved non-coding blocks from upstream regions of putative orthologous gene pairs from man, mouse, rat, fugu, Mus musculus, Danio rerio, and zebrafish.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1203608896"><span>COXPRESdb -- a database of coexpressed gene networks in mammals</span></a></div><p>Find coexpressed gene lists and networks in human and mouse.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1097763045"><span>CVTree -- A Phylogenetic Tree Reconstruction Tool Based on Whole Genomes</span></a></div><p>Construct phylogenetic tree of microorganisms based on oligopeptide content of their complete proteomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1232729680"><span>CleanEST -- the cleansed EST libraries database</span></a></div><p>A novel database server that classifies GenBank's dbEST (database of expressed gene sequences) libraries and removes contaminants.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1256926144"><span>CoCoa -- COefficient of COAncestry software</span></a></div><p>Find information about the ancestral relationship between genes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1227549154"><span>CoGemiR -- a comparative genomics microRNA database</span></a></div><p>Provides an overview of the genomic organization of microRNAs and extent of conservation during evolution in different metazoan species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1117678221"><span>Comparative Genometrics (CG) -- a database dedicated to biometric comparisons of whole genomes</span></a></div><p>Conduct comparative biometric analysis of chromosomes of different organisms.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1151007916"><span>DoTS -- Database Of Transcribed Sequences</span></a></div><p>Search for Indices of gene and transcripts in human and mouse.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174510065"><span>DroSpeGe -- rapid access database for new Drosophila species genomes</span></a></div><p>Search and compare 12 new and old Drosophila genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1098208414"><span>ECR Browser -- A Tool for Visualizing and Accessing Data from Comparisons of Multiple Vertebrate Genomes</span></a></div><p>Access to whole genome alignments of human, mouse, rat and fish sequences.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209738459"><span>EPGD -- Eukaryotic Paralog Group Database</span></a></div><p>Find eukaryotic paralog/paralogon information.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1232726869"><span>EVOG -- evolutionary visualizer for overlapping genes</span></a></div><p>Analyze the evolutionary process of overlapping genes when comparing different species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1227633714"><span>GNAT -- Inter-species gene mention normalization (ISGN)</span></a></div><p>The first publicly available system reported to handle inter-species gene mention normalization.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1229438992"><span>GenColors -- annotation and comparative genomics of prokaryotes made easy</span></a></div><p>A web-based software/database system aimed at an improved and accelerated annotation of prokaryotic genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1151086258"><span>GeneNest gene indices</span></a></div><p>Visualize gene indices of human, mouse, Arabidopsis, Zebrafish, Drosophila and Sheep.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174489378"><span>GenomeTrafac -- a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs</span></a></div><p>Use comparative genomics approach to characterize gene models and identify putative cis-regulatory regions of RefSeq Gene Orthologs.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL20110518150753"><span>IKMC -- International Knockout Mouse Consortium web portal</span></a></div><p>Find information about mutated mouse genes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209411604"><span>IMG/M -- Integrated Microbial Genomes/Metagenomes</span></a></div><p>A data management and analysis system for metagenomes</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1234976694"><span>ISED -- Influenza sequence and epitope database.</span></a></div><p>Search for influenza sequence, vaccine, and drug resistance information.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL20140710115515"><span>LAMDHI: The Search for Animal Models Starts Here</span></a></div><p>LAMHDI, the initiative to Link Animal Models to Human DIsease, is designed to accelerate the research process by providing biomedical researchers with a simple, comprehensive Web-based resource to find the best animal models for their research.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1228843803"><span>MANTIS -- a phylogenetic framework for multi-species genome comparisons</span></a></div><p>The missing link between multi-species full genome comparisons and functional analysis.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1099578148"><span>MBGD -- Microbial genome database for comparative analysis</span></a></div><p>Conduct comparative analysis of completely sequenced microbial genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1221077729"><span>MEGA -- Molecular Evolutionary Genetics Analysis</span></a></div><p>A biologist-centric software for evolutionary analysis of DNA and protein sequences.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174596756"><span>MamPol -- a database of nucleotide polymorphism in the Mammalia class</span></a></div><p>Conduct single nucleotide polymorphisms diversity measurements among homologous sequences from the Mammalia class.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1266437314"><span>MicrobesOnline -- Prokaryotic Genome Database</span></a></div><p>Find information about 1000s of microbial genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1208461006"><span>Narcisse -- a mirror view of conserved syntenies</span></a></div><p>A database dedicated to the study of genome conservation.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1219772764"><span>OMA -- the Orthologous MAtrix project</span></a></div><p>Explore orthologous relations across 352 complete genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209738741"><span>OPTIC -- orthologous and paralogous transcripts in clades</span></a></div><p>Browse complete genomes in several clades.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209573208"><span>OrthoDB -- the hierarchical catalog of eukaryotic orthologs</span></a></div><p>Find groups of orthologous genes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1221231200"><span>OrthoMaM -- orthologous mammalian markers</span></a></div><p>A database of orthologous genomic markers for placental mammal phylogenetics.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1100009979"><span>PEDANT -- Protein Extraction, Description and ANalysis Tool</span></a></div><p>Conduct genome wide functional and structural analysis.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174489475"><span>PReMod -- a database of genome-wide mammalian cis-regulatory module predictions</span></a></div><p>Conduct genome-wide cis-regulatory module (CRM) predictions for both the human and the mouse genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1151083092"><span>PhenomicDB -- Comparison of phenotypes of orthologous genes in human and model organisms</span></a></div><p>Compare phenotypes of a given gene or gene set in different model organisms.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1190899370"><span>Phylemon -- A suite of web tools for molecular evolution, phylogenetics and phylogenomics</span></a></div><p>Phylemon is a web server that integrates a selected suite of more than 20 different tools from the most popular stand-alone programs of phylogenetic and evolutionary analysis.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1232555615"><span>PhyloPat -- the phylogenetic pattern database</span></a></div><p>Use this database to see where in the evolution some phylogenetic lineages were started, and over which species they were contained.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174510223"><span>Pristionchus.org -- a genome-centric database of the nematode satellite species Pristionchus pacificus</span></a></div><p>Search for genomic information on nematode satellite species Pristionchus pacificus.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1236367352"><span>ProtClustDB -- NCBI Protein Clusters Database</span></a></div><p>Find information about related protein sequences.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209410278"><span>ProtozoaDB -- database of protozoan genomes</span></a></div><p>Database hosting genomics and post-genomics data from multiple protozoans.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1232554690"><span>Pseudofam -- the pseudogene families database</span></a></div><p>A database of pseudogene families based on the protein families from the Pfam database.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL20110518151439"><span>RIDM - RIKEN Integrated Database of Mammals</span></a></div><p>Find genomic information about mammals.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1272562567"><span>RegPrecise -- Regulon Prediction Database</span></a></div><p>Find information about predicted regulons in prokaryotic transcription regulation.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1272477473"><span>SALAD -- Surveyed contained motif ALignment diagram and the Associating Dendrogram</span></a></div><p>Perform systematic comparison of proteome data among species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1229010765"><span>SGN -- SOL Genomics Network</span></a></div><p>A comparative map viewer dedicated to the biology of the Solanaceae family.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1256669040"><span>ShotgunFunctionalizeR -- R-package for functional comparison of metagenomes</span></a></div><p>Analyze data from functional analysis on fragmented microbial genetic material.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1256238439"><span>SnoopCGH -- Comparative Genomic Hybridization software</span></a></div><p>Visualize and explore comparative genomic hybridization data sets.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174489598"><span>SwissRegulon -- a database of genome-wide annotations of regulatory sites</span></a></div><p>Search for genome-wide annotations of regulatory sites in yeast and prokaryotes genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1229013521"><span>TaxonGap -- a visualization tool for intra- and inter-species variation among individual biomarkers</span></a></div><p>Compare and select individual biomarkers.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1106063477"><span>The Adaptive Evolution Database (TAED) -- a phylogeny based tool for comparative genomics</span></a></div><p>Search for information on adaptive evolution in gene families of higher plants and chordate.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1216742716"><span>The CGView Server -- a comparative genomics tool for circular genomes</span></a></div><p>Generate graphical maps of circular genomes that show sequence features, base composition plots, analysis results and sequence similarity plots.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1099663588"><span>The ERGO -- Genome analysis and discovery system</span></a></div><p>Conduct a comprehensive analysis of genes and genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1177611772"><span>The Macaque Genome: Interactive Poster and Teaching Resource</span></a></div><p>An interactive online poster presentation on the Macaque genome, including high-quality images, video clips, and Web resources</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1103816940"><span>The TIGR Gene Indices -- clustering and assembling EST and known genes and integration with eukaryotic genomes</span></a></div><p>Search for annotated genetic information of expressed sequence tags (ESTs) in different eukaryotic organisms.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1043767169"><span>UniGene</span></a></div><p>Find mapping and expression information for a unigene cluster (ESTs and full-length mRNA sequences organized into clusters that each represent a unique known or putative gene)</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1216738072"><span>Uprobe -- universal overgo hybridization-based probe retrieval and design</span></a></div><p>A public online resource for identifying or designing 'universal' overgo-hybridization probes from conserved sequences that can be used to efficiently screen one or more genomic libraries from a designated group of species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1098205291"><span>VISTA -- Computational Tools for Comparative Genomics</span></a></div><p>Comprehensive suite of programs and databases for comparative analysis of genomic sequences.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL20110518144404"><span>cBARBEL -- Catfish Breeder and Researcher Bioinformatics Entry Location</span></a></div><p>Find information about ictalurid catfish.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209738040"><span>eggNOG -- evolutionary genealogy of genes: Non-supervised Orthologous Groups</span></a></div><p>Discover orthologous groups of genes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1234370319"><span>metaTIGER -- a metabolic gene evolution resource</span></a></div><p>Find metabolic networks and phylogenomic information on a taxonomically diverse range of eukaryotes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1138901833"><span>xBASE -- a collection of online databases for bacterial comparative genomics</span></a></div><p>Conduct bacterial comparative genomics.</p></div>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/43900/finding-a-mimicry-game-for-teaching-on-line-and-mentioned-general-resources</guid>
	<pubDate>Tue, 28 Jun 2022 07:32:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/43900/finding-a-mimicry-game-for-teaching-on-line-and-mentioned-general-resources</link>
	<title><![CDATA[Finding a mimicry game for teaching on-line and mentioned general resources]]></title>
	<description><![CDATA[<pre>Mimicry and other resources
Mimicry games:
Great Heliconius game:
http://heliconius.org/evolving_butterflies/
(See also 
https://royalsocietypublishing.org/doi/10.1098/rspb.2020.0014)
Other one, a bit less friendly:
https://ccl.northwestern.edu/netlogo/models/Mimicry
Camouflage practical
https://alexis-catherine.github.io/publication/natural-selection-and-camouflage/
(NetLogo also has one: 
https://ccl.northwestern.edu/netlogo/models/BugHuntCamouflage)
Peppered moth game:
https://askabiologist.asu.edu/peppered-moths-game/play.html

General resources
The always popular Populus:
https://cbs.umn.edu/populus/overview
Drift &amp; Gene Flow 
https://cartwrig.ht/apps/genie/
(Cock van Oosterhout has a great ppt to lead students through this)
See also https://cartwrig.ht/apps/redlynx/
https://demonstrations.wolfram.com/ReplicatorMutatorDynamicsWithThreeStrategies/
NetLogo:
http://ccl.northwestern.edu/netlogo/models/index.cgi
Population Genetics:
https://www.radford.edu/~rsheehy/Gen_flash/popgen/
Evolution in general
https://evolution.berkeley.edu/evolibrary/home.php
Mitochondrial Eve:
https://projects.ncsu.edu/cals/gn/ex/mit-eve.html
Y chromosomes:
https://projects.ncsu.edu/cals/gn/ex/y-chrom.html
A professional online package from Michael Kasumovic:
https://arludo.com/
a compilation of resources:
https://planted.botany.org/index.php?P=Home
Finally, Donald Forsdyke has some great on-line videos explaining
evolutionary principles (occasionally in a fake Scottish accent):
http://post.queensu.ca/~forsdyke/videolectures.htm
</pre><p>&nbsp;</p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17515/ngs-online-training</guid>
  <pubDate>Sat, 27 Sep 2014 07:42:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[NGS Online Training]]></title>
  <description><![CDATA[
<p>ArrayGen Technologies announces to provide online NGS training through out the globe. Now analyze your own NGS datasets from anywhere.For more information contact us at training@arraygen.com</p>

<p>Please visit our site at www.arraygen.com</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17966/internship-program-for-bioinformatics-biotechnology-professionals-no-of-vacancy-2</guid>
  <pubDate>Wed, 08 Oct 2014 01:10:08 -0500</pubDate>
  <link></link>
  <title><![CDATA[Internship Program for Bioinformatics / Biotechnology Professionals (No. Of Vacancy: 2)]]></title>
  <description><![CDATA[
<p>ArrayGen is offering an Internship Program for Post graduate Bioinformatics / Biotechnology students and professionals. ArrayGen Technologies provide an excellent opportunity to gain research experience and explore if a scientific career is right for you. Currently we offer positions to outstanding students interested in Next Generation Sequencing (NGS) data analysis. Applications are accepted throughout the year. Accepted students will be listed on web with their schedules. Accepted students can attend our future workshops and trainings freely at the specified venue.</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18820/jrfsrf-at-university-of-calcutta</guid>
  <pubDate>Fri, 31 Oct 2014 08:53:10 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF/SRF at University of Calcutta]]></title>
  <description><![CDATA[
<p>Applications are invited to appear at a walk-in-interview for one post of Junior Research Fellow in the DBT(DBT Twinning NER) sponsored project entitled “Protein folding kinetics is a selection force on shaping codon usage bias in the high expression genes” in the room of the HOD, Department of Biotechnology and the Coordinator, DR. B. C. Guha Centre for Genetic Engineering and Biotechnology, University College of Science, 35 Ballygunge Circular Road, Kolkata 700019 on the 12th November, 2014 at 3:00 p.m.</p>

<p>Essential qualifications: First class M. Sc. in any branch of life sciences and qualified CSIR-UGC NET/GATE Examination.</p>

<p>Desirable qualifications: Practical experience in biochemical and biophysical studies of proteins</p>

<p>Emoluments: as per DBT norms</p>

<p>The project is tenable for two years, initially for one year.</p>

<p>Age: Below 28 years (relaxable in the case of SC/ST/OBC/women candidates)</p>

<p>Candidates are requested to bring two sets of complete applications on plain paper furnishing bio-data and copies of attested certificates along with originals (for verification) on the date of interview.</p>

<p>No TA/DA is admissible for candidates appearing at the interview.</p>

<p>Dr. Rajat Banerjee<br />Assistant Professor<br />Department of Biotechnology and<br />Dr. B. C. Guha Centre for Genetic Engineering and Biotechnology<br />University College of Science<br />35, Ballygunge Circular Road<br />Kolkata 700019</p>

<p>Advertisement: www.caluniv.ac.in/news/jrf_biotech_2.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19137/centre-for-systems-biology-bioinformatics-panjab-university-vacancy-of-research-fellow</guid>
  <pubDate>Wed, 12 Nov 2014 06:18:54 -0600</pubDate>
  <link></link>
  <title><![CDATA[Centre for Systems Biology &amp; Bioinformatics, Panjab University vacancy of Research Fellow]]></title>
  <description><![CDATA[
<p>Applications are invited along with complete bio-data and attested copies of certificates of qualifications, experience etc. for the one post of <br />Research Fellow and one post of Program Assistant under PURSE Grant of the University in Centre for Systems Biology &amp; Bioinformatics, UIEAST, Panjab University, Chandigarh which is tenable till the period of the project</p>

<p>Essential Qualification<br />For Research Fellow:-<br />M.Sc. in Systems Biology and Bioinformatics / Life<br />Sciences with minimum 55% marks.<br />Preference will be given to NET/GATE/ICMR qualified candidates without fellowship however, candidates who have cleared the Panjab University Ph.D. entrance test in Systems Biology &amp; Bioinformatics will also be eligible. </p>

<p>Applications should be reach on or before 19-11-2014 in the office of the undersigned. Interview will be held on 21-11-2014 in the office of the Coordinator, Centre for Systems Biology &amp; Bioinformatics, South Campus, Block-3, Sector-25, Panjab University, Chandigarh. No TA/DA will be paid. </p>

<p>more at http://jobs.puchd.ac.in/includes/jobs/2014/20141110143634-Advertisement.pdf</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21538/senior-research-fellow-at-all-india-institute-of-medical-sciences-aiims-delhi-delhi-delhi</guid>
  <pubDate>Wed, 11 Mar 2015 03:06:10 -0500</pubDate>
  <link></link>
  <title><![CDATA[SENIOR RESEARCH FELLOW at All India Institute of Medical Sciences (AIIMS Delhi) - Delhi, Delhi]]></title>
  <description><![CDATA[
<p>Applications are invited from eligible candidates for the following temporary post in an ICMR funded Research Project entitle “An Investigation to find out reasons for Phenotypic Heterogeneity/Variability in 22q11.2 Microdeletion Syndrome” in Department of Reproductive Biology, AIIMS, New Delhi PI: Dr. Ashutosh Halder, Professor, Department of Reproductive Biology </p>

<p>Name of the post: Senior Research Fellow (SRF) <br />Duration: 2 year <br />Salary: Rs. 28000/- per month + 30% HRA <br />Eligibility: MSc (life sciences) with 2 years research experience, NET/GATE qualified <br />Desirable: Experience in the field of Genomics, Epigenomics &amp; Bioinformatics <br />SELECTION PROCEDURE FOR ALL INDIA INSTITUTE OF MEDICAL SCIENCES (AIIMS DELHI) – SENIOR RESEARCH FELLOW POST: </p>

<p>Candidates can apply on or before 15/03/2015 <br />No Detailed information about the selection process is mentioned in the recruitment notification <br />HOW TO APPLY FOR SENIOR RESEARCH FELLOW VACANCY IN ALL INDIA INSTITUTE OF MEDICAL SCIENCES (AIIMS DELHI): </p>

<p>Deadline: 15.03.15 Submit your C.V in Room No. 2099 (Molecular Cytogenetics Lab), 2nd floor, Reproductive Biology, All India Institute of Medical Sciences, New Delhi-110029 or Email CV to: ashutoshhalder@gmail.com Your CV should include the details of your work experience &amp; degrees along with two references with e-mail and contact number Only 10 shortlisted (on merit) candidates will be invited for interview. No TA/DA will be applicable for the same</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21472/asst-professor-at-central-university-of-jharkhand-cuj</guid>
  <pubDate>Sun, 01 Mar 2015 01:17:52 -0600</pubDate>
  <link></link>
  <title><![CDATA[Asst. Professor at Central University of Jharkhand (CUJ)]]></title>
  <description><![CDATA[
<p>Central University of Jharkhand (CUJ) has issued a recruitment notification for the recruitment of Assistant Professor through recruitment notification – Central University of Jharkhand (CUJ) Recruitment 2015 –  Advt. No.: CUJ/Advt./14-15/15 Date: 26th Feb. 2015. Candidates who have completed M.Sc, Ph.D can apply for the new recruitment notification from Central University of Jharkhand (CUJ)</p>

<p>Central University of Jharkhand has been granted funds by the Department of Biotechnology (DBT), Govt. of India to establish “DBT-Boost to CUJ Interdisciplinary Life Sciences Departments for Education and Research” Applications are invited for the Assistant Professor on purely temporary basis. The appointments shall be initially for a period of one year, renewable every year depending on the satisfactory performance, till the end of project.</p>

<p>Position: ASSISTANT PROFESSOR (Total 03)<br />Salary: 45,000/- (fixed) per month<br />Essential Qualifications: i. Good academic record with at least 55% marks (or an equivalent grade in a point scale wherever grading system is followed) at the master’s degree level with specialization in Biodiversity and Systematic/ Systems Biology/ Biophysics/ Bioinformatics from an Indian  University, or an equivalent degree from an accredited foreign university. ii. Besides fulfilling the above qualifications, the candidates must have cleared the National Eligibility Test (NET) conducted by the UGC, CSIR or similar test accredited by the UGC like SLET/SET. iii. Notwithstanding anything contained in i. and ii. candidates, who are or have been awarded Ph.D Degree in accordance with the University Grants Commission (Minimum Standards and Procedure for Award of Ph.D. Degree) Regulation, 2009, shall be exempted from therequirement of the minimum eligibility condition of NET/SLET/SET for recruitment and appointment of Assistant Professor. iv. NET/SLET/SET shall also not be required for such disciplines for which NET/SLET/SET in not conducted.<br />Desirable: Preference will be given to candidates having Ph.D in any of the above mentioned areas with NET</p>

<p>IMPORTANT DATES TO REMEMBER  :</p>

<p>Last Date to Apply for this job 24/3/2015</p>

<p>REFERENCE:</p>

<p>Central University of Jharkhand (CUJ) Recruitment 2015 –  Advt. No.: CUJ/Advt./14-15/15 Date: 26th Feb. 2015.</p>

<p>More at http://cuj.ac.in/careers.php</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21624/ra-bioinformatics-at-ch-charan-singh-university-meerut</guid>
  <pubDate>Wed, 11 Mar 2015 09:07:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Ch. Charan Singh University, Meerut]]></title>
  <description><![CDATA[
<p>Ch. Charan Singh University, Meerut</p>

<p>http://molbiolabccsumrt.webs.com/</p>

<p>Applications are invited for one post of RA in a DBT funded research project “Creation of Bioinformatics Infrastructure Facility (BIF) for the promotion of Biology Teaching through Bioinformatics (BTBI) Scheme of BTISet”.</p>

<p>Candidate should have a Ph.D. degree in Bioinformatics/Biotechnology/Genetics and Plant Breeding with adequate experience in the area of Bioinformatics. If a suitable candidate for the post of RA is not available, a JRF/SRF may be appointed.</p>

<p>Candidate for the post of JRF/SRF should have Master’s degree in relevant subject with adequate experience in the area of Bioinformatics and should be NET/DBT-BINC qualified</p>

<p>Interested candidates may send their bio-data to Prof. H. S. Balyan (hsbalyan@gmail.com) (in exceptional case, bio-data may also be submitted at the time of interview) and attend the interview on Monday, March 30, 2015 at 11:00 AM in the Department of Genetics &amp; Plant Breeding, Ch. Charan Singh University, Meerut. Candidates shall bring their original documents at the time of interview for verification. No interview letters will be issued and no TA/DA will be paid.</p>
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