<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/36191?offset=130</link>
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	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/3031/following-the-scientific-literature-a-personal-practical-guide-for-young-computational-biologists</guid>
	<pubDate>Fri, 23 Aug 2013 07:18:51 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/3031/following-the-scientific-literature-a-personal-practical-guide-for-young-computational-biologists</link>
	<title><![CDATA[Following the scientific literature: A personal practical guide for young computational biologists]]></title>
	<description><![CDATA[<p><span>The goal of this guide is to describe&nbsp;</span><strong>why</strong><span>,&nbsp;</span><strong>when</strong><span>,&nbsp;</span><strong>where</strong><span>&nbsp;and&nbsp;</span><strong>how</strong><span>&nbsp;can you follow the most up-to-date science of interest and&nbsp;</span><strong>what</strong><span>&nbsp;papers/journals you should follow. The guide is biased towards the fields of genomics/systems biology.(from article)</span></p>
<p><span>Source:&nbsp;<strong><span>&nbsp;<a href="http://www.cs.tau.ac.il/~ulitskyi/">Igor Ulitsky</a>&nbsp;&amp;&nbsp;<a href="http://www.cs.tau.ac.il/~rshamir/">Ron Shamir</a></span></strong></span></p><p>Address of the bookmark: <a href="http://acgt.cs.tau.ac.il/guides/LiteratureGuide.htm" rel="nofollow">http://acgt.cs.tau.ac.il/guides/LiteratureGuide.htm</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/35805/python-learning-resources-for-bioinformatics-and-computational-biologist</guid>
	<pubDate>Fri, 02 Mar 2018 06:54:15 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/35805/python-learning-resources-for-bioinformatics-and-computational-biologist</link>
	<title><![CDATA[Python learning resources for bioinformatics and computational biologist !]]></title>
	<description><![CDATA[<p>Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries.</p><p>Professionally, Python is great for backend web development, data analysis, artificial intelligence, and scientific computing. Many developers have also used Python to build productivity tools, games, and desktop apps, so there are plenty of resources to help you learn how to do those as well.</p><p>For pros and cons visit&nbsp;http://www.bestprogramminglanguagefor.me/why-learn-python and&nbsp;http://bioinformaticsonline.com/discussion/view/459/python-vs-perl</p><p>More resources at&nbsp;https://github.com/CodementorIO/Python-Learning-Resources</p><p>Following are the list of useful python programming resources:</p><ul>
<li><a href="http://www.oreilly.com/programming/free/20-python-libraries-you-arent-using-but-should.csp">20 Python Libraries You Aren't Using (But Should)</a>&nbsp;<em>(Just fill the fields with any values)</em></li>
<li><a href="https://en.wikibooks.org/wiki/A_Beginner%27s_Python_Tutorial">A Beginner's Python Tutorial</a></li>
<li><a href="https://python.swaroopch.com/">A Byte of Python</a>&nbsp;(3.x) (HTML, PDF, EPUB, Mobi)</li>
<li><a href="https://github.com/RafeKettler/magicmethods">A Guide to Python's Magic Methods</a>&nbsp;- Rafe Kettler</li>
<li><a href="http://www.oreilly.com/programming/free/files/a-whirlwind-tour-of-python.pdf">A Whirlwind Tour of Python</a>&nbsp;- Jake VanderPlas (PDF)&nbsp;<a href="http://www.oreilly.com/programming/free/a-whirlwind-tour-of-python.csp?download=yes">(EPUB, MOBI)</a></li>
<li><a href="http://automatetheboringstuff.com/chapter0/">Automate the Boring Stuff</a>&nbsp;- Al Sweigart</li>
<li><a href="http://biopython.org/DIST/docs/tutorial/Tutorial.pdf">Biopython</a>&nbsp;(PDF)</li>
<li><a href="http://github.com/thewhitetulip/build-app-with-python-antitextbook">Build applications in Python the antitextbook</a>&nbsp;(3.x) (HTML, PDF, EPUB, Mobi)</li>
<li><a href="https://www.packtpub.com/packt/free-ebook/python-machine-learning-algorithms">Building Machine Learning Systems with Python</a>&nbsp;- Willi Richert &amp; Luis Pedro Coelho, Packt.&nbsp;<em>(Just fill the fields with any values)</em></li>
<li><a href="http://www.itmaybeahack.com/book/oodesign-python-2.1/latex/BuildingSkillsinOODesign.pdf">Building Skills in Object-Oriented Design (Python)</a>&nbsp;(PDF) (2.1.1)</li>
<li><a href="http://www.itmaybeahack.com/book/python-2.6/latex/BuildingSkillsinPython.pdf">Building Skills in Python</a>&nbsp;(PDF) (2.6)</li>
<li><a href="http://python.net/~goodger/projects/pycon/2007/idiomatic/handout.html">Code Like a Pythonista: Idiomatic Python</a></li>
<li><a href="https://www.codecademy.com/learn/python">CodeCademy Python</a></li>
<li><a href="http://composingprograms.com/">Composing Programs</a>&nbsp;(3.x)</li>
<li><a href="https://web.archive.org/web/20161016153130/http://www.brpreiss.com/books/opus7/html/book.html">Data Structures and Algorithms in Python</a>&nbsp;- B. R. Preiss (PDF)</li>
<li><a href="http://getpython3.com/diveintopython3/">Dive into Python 3</a>&nbsp;- Mark Pilgrim (3.0)
<ul>
<li><a href="http://www.diveintopython.net/">Dive into Python</a>&nbsp;- Mark Pilgrim (2.3)</li>
</ul>
</li>
<li><a href="http://www.labri.fr/perso/nrougier/from-python-to-numpy/">From Python to NumPy</a></li>
<li><a href="http://www.fullstackpython.com/">Full Stack Python</a></li>
<li><a href="http://www.oreilly.com/programming/free/functional-programming-python.csp">Functional Programming in Python</a>&nbsp;<em>(Just fill the fields with any values)</em></li>
<li><a href="http://python.cs.southern.edu/pythonbook/pythonbook.pdf">Fundamentals of Python Programming</a>&nbsp;- Richard L. Halterman (PDF) (3.2)</li>
<li><a href="https://developers.google.com/edu/python/">Google's Python Class</a>&nbsp;(2.4 - 2.x)</li>
<li><a href="https://google.github.io/styleguide/pyguide.html">Google's Python Style Guide</a></li>
<li><a href="http://inventwithpython.com/hacking/chapters/">Hacking Secret Cyphers with Python</a>&nbsp;- Al Sweigart (3.3)</li>
<li><a href="http://www.oreilly.com/programming/free/hadoop-with-python.csp">Hadoop with Python</a>&nbsp;<em>(Just fill the fields with any values)</em></li>
<li><a href="http://ianozsvald.com/HighPerformancePythonfromTrainingatEuroPython2011_v0.2.pdf">High Performance Python</a>&nbsp;(PDF)</li>
<li><a href="http://docs.python-guide.org/en/latest/">Hitchhiker's Guide to Python!</a>&nbsp;(2.6)</li>
<li><a href="http://www.oreilly.com/programming/free/files/how-to-make-mistakes-in-python.pdf">How to Make Mistakes in Python</a>&nbsp;- Mike Pirnat (PDF) (1st edition)</li>
<li><a href="http://interactivepython.org/courselib/static/thinkcspy/index.html">How to Think Like a Computer Scientist: Learning with Python, Interactive Edition</a>&nbsp;(3.2)
<ul>
<li><a href="http://www.greenteapress.com/thinkpython/thinkCSpy/">How to Think Like a Computer Scientist: Learning with Python</a>&nbsp;- Allen B. Downey, Jeff Elkner and Chris Meyers (2.4)</li>
<li><a href="http://www.greenteapress.com/thinkpython/">Think Python</a>&nbsp;- Allen B. Downey (2.x &amp; 3.0)</li>
</ul>
</li>
<li><a href="http://book.pythontips.com/en/latest/index.html">Intermediate Python</a>&nbsp;- Muhammad Yasoob Ullah Khalid (1st edition)</li>
<li><a href="http://opentechschool.github.io/python-beginners/en/">Introduction to Programming with Python</a>&nbsp;(3.3)
<ul>
<li><a href="http://python-ebook.blogspot.co.uk/">Introduction to Programming Using Python</a>&nbsp;- Cody Jackson (1st edition) (2.3)</li>
</ul>
</li>
<li><a href="http://kracekumar.com/post/71171551647/introduction-to-python">Introduction to Python</a>&nbsp;- Kracekumar (2.7.3)</li>
<li><a href="http://inventwithpython.com/chapters/">Invent Your Own Computer Games With Python</a>&nbsp;- Al Sweigart (3.1)</li>
<li><a href="http://learnpythonbreakpython.com/">Learn Python, Break Python</a></li>
<li><a href="https://learnxinyminutes.com/docs/python/">Learn Python in Y minutes</a></li>
<li><a href="http://learnpythonthehardway.org/book/">Learn Python The Hard Way</a>&nbsp;(2.5 - 2.6)</li>
<li><a href="https://www.ida.liu.se/~732A47/literature/PythonBook.pdf">Learn to Program Using Python</a>&nbsp;- Cody Jackson (PDF)</li>
<li><a href="https://www.packtpub.com/packt/free-ebook/learning-python">Learning Python</a>&nbsp;- Fabrizio Romano, Packt.&nbsp;<em>(Just fill the fields with any values)</em></li>
<li><a href="http://www.alan-g.me.uk/">Learning to Program</a></li>
<li><a href="https://github.com/jrjohansson/scientific-python-lectures">Lectures on scientific computing with python</a>&nbsp;- J.R. Johansson (2.7)</li>
<li><a href="http://inventwithpython.com/pygame/chapters/">Making Games with Python &amp; Pygame</a>&nbsp;- Al Sweigart (2.7)</li>
<li><a href="http://www.clips.ua.ac.be/sites/default/files/modeling-creativity.pdf">Modeling Creativity: Case Studies in Python</a>&nbsp;- Tom D. De Smedt (PDF)</li>
<li><a href="http://www.nltk.org/book/">Natural Language Processing with Python</a>&nbsp;(3.x)</li>
<li><a href="https://en.wikibooks.org/wiki/Non-Programmer%27s_Tutorial_for_Python_3">Non-Programmer's Tutorial for Python 3</a>&nbsp;(3.3)
<ul>
<li><a href="https://en.wikibooks.org/wiki/Non-Programmer%27s_Tutorial_for_Python_2.6">Non-Programmer's Tutorial for Python 2.6</a>&nbsp;(2.6)</li>
</ul>
</li>
<li><a href="http://www.oreilly.com/programming/free/from-future-import-python.csp">Picking a Python Version: A Manifesto</a>&nbsp;<em>(Just fill the fields with any values)</em></li>
<li><a href="http://python3porting.com/">Porting to Python 3: An In-Depth Guide</a>&nbsp;(2.6 - 2.x &amp; 3.1 - 3.x)</li>
<li><a href="https://launchpadlibrarian.net/165489933/PracticalProgrammingPython2014.pdf">Practical Programming in Python</a>&nbsp;- Jeffrey Elkner (PDF)</li>
<li><a href="http://interactivepython.org/runestone/static/pythonds/index.html">Problem Solving with Algorithms and Data Structures using Python</a>&nbsp;- Bradley N. Miller and David L. Ranum</li>
<li><a href="http://programarcadegames.com/">Program Arcade Games With Python And Pygame</a>&nbsp;(3.3)</li>
<li><a href="http://programmingcomputervision.com/downloads/ProgrammingComputerVision_CCdraft.pdf">Programming Computer Vision with Python</a>&nbsp;(PDF)</li>
<li><a href="https://docs.python.org/2/download.html">Python 2 Official Documentation</a>&nbsp;(PDF, HTML, TEXT) (2.x)</li>
<li><a href="http://infohost.nmt.edu/tcc/help/pubs/python/web/">Python 2.7 quick reference</a>&nbsp;- New Mexico Tech (2.7)</li>
<li><a href="https://docs.python.org/3/download.html">Python 3 Official Documentation</a>&nbsp;(PDF, EPUB, HTML, TEXT) (3.x)</li>
<li><a href="http://chimera.labs.oreilly.com/books/1230000000393/index.html">Python Cookbook</a>&nbsp;- David Beazley</li>
<li><a href="https://github.com/jakevdp/PythonDataScienceHandbook">Python Data Science Handbook</a>&nbsp;- Jake VanderPlas (HTML, Jupyter Notebooks)</li>
<li><a href="http://www.kevinsheppard.com/images/0/09/Python_introduction.pdf">Python for Econometrics</a>&nbsp;- Kevin Sheppard (PDF) (2.7.5)</li>
<li><a href="http://py4e.com/book.php">Python for Everybody Exploring Data Using Python 3</a>&nbsp;- Charles Severance (PDF, EPUB, HTML)
<ul>
<li><a href="http://www.pythonlearn.com/book.php">Python for Informatics: Exploring Information</a>&nbsp;(2.7.5)</li>
</ul>
</li>
<li><a href="http://pymbook.readthedocs.org/en/latest/">Python for you and me</a>&nbsp;(2.7.3)</li>
<li><a href="http://pymbook.readthedocs.org/en/py3/">Python for you and me</a>&nbsp;(3.x)</li>
<li><a href="http://safehammad.com/downloads/python-idioms-2014-01-16.pdf">Python Idioms</a>&nbsp;(PDF)</li>
<li><a href="http://www.oreilly.com/programming/free/python-in-education.csp">Python in Education</a>&nbsp;<em>(Just fill the fields with any values)</em></li>
<li><a href="http://www.greenteapress.com/pythonhydro/pythonhydro.html">Python in Hydrology</a>&nbsp;- Sat Kumar Tomer</li>
<li><a href="https://github.com/gregmalcolm/python_koans">Python Koans</a>&nbsp;(2.7 or 3.x)</li>
<li><a href="https://pymotw.com/3/">Python Module of the Week</a>&nbsp;(3.x)
<ul>
<li><a href="https://pymotw.com/2/">Python Module of the Week</a>&nbsp;(2.x)</li>
</ul>
</li>
<li><a href="http://books.goalkicker.com/PythonBook/">Python Notes for Professionals</a>&nbsp;- Compiled from StackOverflow documentation (3.x)</li>
<li><a href="http://anandology.com/python-practice-book/index.html">Python Practice Book</a>&nbsp;(2.7.1)</li>
<li><a href="http://pythonpracticeprojects.com/">Python Practice Projects</a></li>
<li><a href="https://upload.wikimedia.org/wikipedia/commons/9/91/Python_Programming.pdf">Python Programming</a>&nbsp;(PDF) (2.6)</li>
<li><a href="http://scipy-lectures.github.io/">Scipy Lecture Notes</a></li>
<li><a href="http://www-inst.eecs.berkeley.edu/~cs61a/sp12/book/">SICP in Python</a>&nbsp;(3.2)</li>
<li><a href="http://www.briggs.net.nz/snake-wrangling-for-kids.html">Snake Wrangling For Kids</a>&nbsp;(3.x)</li>
<li><a href="http://python3porting.com/">Suporting Python 3: An In-Depth Guide</a>&nbsp;(2.6 - 2.x &amp; 3.1 - 3.x)</li>
<li><a href="http://chimera.labs.oreilly.com/books/1234000000754/index.html">Test-Driven Web Development with Python</a>&nbsp;(3.3 - 3.x)</li>
<li><a href="http://gnosis.cx/TPiP/">Text Processing in Python</a>&nbsp;- David Mertz (2.3 - 2.x)</li>
<li><a href="http://www.spronck.net/pythonbook/">The Coder's Apprentice: Learning Programming with Python 3</a>&nbsp;- Pieter Spronck (PDF) (3.x)</li>
<li><a href="http://www.jython.org/jythonbook/en/1.0">The Definitive Guide to Jython, Python for the Java Platform</a>&nbsp;- Josh Juneau, Jim Baker, Victor Ng, Leo Soto, Frank Wierzbicki (2.5)</li>
<li><a href="http://docs.quantifiedcode.com/python-anti-patterns/">The Little Book of Python Anti-Patterns</a>&nbsp;(<a href="https://github.com/quantifiedcode/python-anti-patterns">Source</a>)</li>
<li><a href="http://niche-canada.org/research/niche-digital-infrastructure-project/the-programming-historian/">The Programming Historian</a>&nbsp;- William J. Turkel, Adam Crymble and Alan MacEachern</li>
<li><a href="http://mirnazim.org/writings/python-ecosystem-introduction/">The Python Ecosystem: An Introduction</a></li>
<li><a href="http://python-gtk-3-tutorial.readthedocs.org/en/latest/">The Python GTK+ 3 Tutorial</a></li>
<li><a href="http://effbot.org/librarybook/">The Standard Python Library</a>&nbsp;- Fredrik Lundh</li>
<li><a href="http://greenteapress.com/complexity/">Think Complexity</a>&nbsp;- Allen B. Downey (2nd Edition) (PDF, HTML)</li>
<li><a href="http://web2py.com/book">Web2py: Complete Reference Manual, 6th Edition (pre-release)</a>&nbsp;(2.5 - 2.x)</li>
<li><a href="https://en.wikibooks.org/wiki/Python_Programming">Wikibooks: Python Programming</a>&nbsp;(2.7)</li>
</ul>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/851/the-institute-for-molecular-bioscience-imb-bailey-lab</guid>
  <pubDate>Sun, 14 Jul 2013 11:53:08 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Institute for Molecular Bioscience (IMB), Bailey Lab]]></title>
  <description><![CDATA[
<p>Pattern recognition and computational biology</p>

<p>MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription</p>

<p>Specialization:<br />Pattern recognition and modelling in computational biology</p>

<p>Link @ http://www.imb.uq.edu.au/tim-bailey</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/1212/computational-proteomics-lets-remember-the-basics</guid>
	<pubDate>Thu, 01 Aug 2013 17:24:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/1212/computational-proteomics-lets-remember-the-basics</link>
	<title><![CDATA[Computational Proteomics : Lets remember the basics]]></title>
	<description><![CDATA[<p>I spend some of my valuable time in computational drug designing sector. I remember my initial proteomics days, playing with interactive protein visualization software and dreaming big. Fortunately or unfortunately, I switched to genomics and handling the genomic floods in Petabytes which is expected to be in Brontobytes in coming years. Did I mention Brontobytes ??? Let me call to my server personnel &hellip; it gonna tsunami !!!!!</p><p>Today, refreshing my old memories I decided to blog about the basic knowledge of biochemistry and computational proteomics&nbsp;skills, but after I found several article on internet saying exactly what I had wanted to say I thought I might as well just redirect BOL's blog readers there instead:</p><p>Here is the list of website and videos links which provide a good resource for you basic chemistry need:</p><p><a href="http://tecreativ.blogspot.co.uk/2012/09/funny-shortcut-remember-periodic-table.html"></a><a href="http://tecreativ.blogspot.co.uk/2012/09/funny-shortcut-remember-periodic-table.html"></a><a href="http://tecreativ.blogspot.co.uk/2012/09/funny-shortcut-remember-periodic-table.html"></a><a href="http://tecreativ.blogspot.co.uk/2012/09/funny-shortcut-remember-periodic-table.html">http://tecreativ.blogspot.co.uk/2012/09/funny-shortcut-remember-periodic-table.html</a></p><p>This blog have some specific hindi word to remember entire periodic table. I really like</p><p>Group 14 (C Si Ge Sn Pb) -&gt; Sentence &ldquo;<strong>C</strong>hemistry&nbsp;<strong>Si</strong>r&nbsp;<strong>G</strong>iv<strong>e</strong>s&nbsp;<strong>S</strong>a<strong>n</strong>ki&nbsp;<strong>P</strong>ro<strong>b</strong>lems&rdquo;</p><p>Sanki is a hindi word which mean crazy :P</p><p>I found this link useful as well&nbsp;<a href="http://www.wikihow.com/Memorise-the-Periodic-Table"></a><a href="http://www.wikihow.com/Memorise-the-Periodic-Table"></a><a href="http://www.wikihow.com/Memorise-the-Periodic-Table"></a><a href="http://www.wikihow.com/Memorise-the-Periodic-Table">http://www.wikihow.com/Memorise-the-Periodic-Table</a></p><p>The eagle genomics group provide an element of bioinformatics in periodic tables. Yes you got it, this is not periodic table rather bioinformatics tools with periodicals</p><p><a href="http://elements.eaglegenomics.com/"></a><a href="http://elements.eaglegenomics.com/"></a><a href="http://elements.eaglegenomics.com/"></a><a href="http://elements.eaglegenomics.com/">http://elements.eaglegenomics.com/</a></p><p>You can also try this video links, which provide you an overview with tricks on periodic tables:</p><p><a href="http://www.youtube.com/watch?v=fLSfgNxoVGk"></a><a href="http://www.youtube.com/watch?v=fLSfgNxoVGk"></a><a href="http://www.youtube.com/watch?v=fLSfgNxoVGk"></a><a href="http://www.youtube.com/watch?v=fLSfgNxoVGk">http://www.youtube.com/watch?v=fLSfgNxoVGk</a></p><p><a href="http://www.youtube.com/user/periodicvideos"></a><a href="http://www.youtube.com/user/periodicvideos"></a><a href="http://www.youtube.com/user/periodicvideos"></a><a href="http://www.youtube.com/user/periodicvideos">http://www.youtube.com/user/periodicvideos</a></p><p>For drug design educational material, software, tools, databses, viewer, file format and many more stuff at one place&nbsp;<a href="http://www.allfordrugs.com/drug-design/.%C2%A0I"></a><a href="http://www.allfordrugs.com/drug-design/"></a><a href="http://www.allfordrugs.com/drug-design/"></a><a href="http://www.allfordrugs.com/drug-design/">http://www.allfordrugs.com/drug-design/</a>&nbsp;I highly recommend you all computational drug designer to bookmark this page for future studies as well.</p><p>I just remember one of my mini project in which I use my flash knowledge (flash .. oh ya flash) to explain amino acids in interactive and user friendly manner. I can&rsquo;t provide It right now, but promise you to provide a link in near future. I hope that you will enjoy my flashy creative skills :).</p><p>Moreover, I found some of very interesting tricks to remember all amino acids chemical formulae on youtube at</p><p><a href="http://www.youtube.com/watch?v=gqrWb0fmzQ&amp;list=PL6132651E70BB5575"></a><a href="http://www.youtube.com/watch?v=gqrWb0fmzQ&amp;list=PL6132651E70BB5575"></a><a href="http://www.youtube.com/watch?v=gqrWb0fmzQ&amp;list=PL6132651E70BB5575"></a><a href="http://www.youtube.com/watch?v=gqrWb0fmzQ&amp;list=PL6132651E70BB5575">http://www.youtube.com/watch?v=gqrWb0fmzQ&amp;list=PL6132651E70BB5575</a></p><p><a href="http://www.youtube.com/watch?v=C2GfoGXfySQ&amp;list=PL6132651E70BB5575"></a><a href="http://www.youtube.com/watch?v=C2GfoGXfySQ&amp;list=PL6132651E70BB5575"></a><a href="http://www.youtube.com/watch?v=C2GfoGXfySQ&amp;list=PL6132651E70BB5575"></a><a href="http://www.youtube.com/watch?v=C2GfoGXfySQ&amp;list=PL6132651E70BB5575">http://www.youtube.com/watch?v=C2GfoGXfySQ&amp;list=PL6132651E70BB5575</a></p><p><br />Key points for computer added drug designers?<br />1. A shortage of biochemistry skills means that you absolutely nowhere in understanding the key concept and do research.<br />2. Keep handy with complex mathematical formula, before merely running tools or software.<br />3. Dig it better and deeper guys .. design it.</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/1514/list-of-pharmacogenomics-companies-worldwide</guid>
	<pubDate>Fri, 09 Aug 2013 13:24:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/1514/list-of-pharmacogenomics-companies-worldwide</link>
	<title><![CDATA[List of pharmacogenomics companies worldwide]]></title>
	<description><![CDATA[<div><div><p>Pharmacogenomics are the most promising area of research. Here is the list of some Pharmacogenomics companies worldwide. Feel free to add more pharmacogenomics companies if not mentioned in here.</p><p>Great Pharmacogenomics companies <br /><a href="http://www.aruplab.com/">www.aruplab.com</a> <br /><a href="http://www.clarientinc.com/">www.clarientinc.com</a> <br /><a href="http://www.cns-hts.com/">www.cns-hts.com</a> <br /><a href="http://www.dnanow.com/">www.dnanow.com</a> <br /><a href="http://www.dnavision.be/">www.dnavision.be</a> <br /><a href="http://www.dnavision.com/">www.dnavision.com</a> <br /><a href="http://www.dxsdiagnostics.com/">www.dxsdiagnostics.com</a> <br /><a href="http://www.entrogen.com/">www.entrogen.com</a> <br /><a href="http://www.exiqon.com/">www.exiqon.com</a> <br /><a href="http://www.gene.com/">www.gene.com</a> <br /><a href="http://www.genomichealth.com/">www.genomichealth.com</a> <br /><a href="http://www.genoptix.com/">www.genoptix.com</a> <br /><a href="http://www.genpathdiagnostics.com/">www.genpathdiagnostics.com</a> <br /><a href="http://www.gentris.com/">www.gentris.com</a> <br /><a href="http://www.immunicon.com/">www.immunicon.com</a> <br /><a href="http://www.ingenuity.com/">www.ingenuity.com</a> <br /><a href="http://www.lab21.com/">www.lab21.com</a> <br /><a href="http://www.labcorp.com/">www.labcorp.com</a> <br /><a href="http://www.lion-ag.de/">www.lion-ag.de</a> <br /><a href="http://www.lynxgen.com/">www.lynxgen.com</a> <br /><a href="http://www.mayoclinic.com/">www.mayoclinic.com</a> <br /><a href="http://www.mesoscale.com/">www.mesoscale.com</a> <br /><a href="http://www.microcide.com/">www.microcide.com</a> <br /><a href="http://www.mitokor.com/">www.mitokor.com </a> <br /><a href="http://www.monarchlifesciences.com/">www.monarchlifesciences.com</a> <br /><a href="http://www.mplnet.com/">www.mplnet.com</a> <br /><a href="http://www.orchidbio.com/">www.orchidbio.com</a> <br /><a href="http://www.pebio.com/">www.pebio.com</a> <br /><a href="http://www.phenomenome.com/">www.phenomenome.com</a> <br /><a href="http://www.phenopath.com/">www.phenopath.com</a> <br /><a href="http://www.ppgx.com/">www.ppgx.com</a> <br /><a href="http://www.prometheuslabs.com/">www.prometheuslabs.com</a> <br /><a href="http://www.protogene.com/">www.protogene.com</a> <br /><a href="http://www.questdiagnostics.com/">www.questdiagnostics.com</a> <br /><a href="http://www.rigelinc.com/">www.rigelinc.com</a> <br /><a href="http://www.rii.com/">www.rii.com</a> <br /><a href="http://www.saladax.com/">www.saladax.com</a> <br /><a href="http://www.tmdlab.com/">www.tmdlab.com</a> <br /><a href="http://www.transgenomic.com/">www.transgenomic.com</a> <br /><a href="http://www.twt.com/">www.twt.com</a> <br /><a href="http://www.uslabs.net/">www.uslabs.net</a> <br /><a href="http://www.variagenics.com/">www.variagenics.com</a> <br /><br />Great Equipment Companies for Genomics <br /><a href="http://www.affymetrix.com/">www.affymetrix.com</a> <br /><a href="http://www.illumina.com/">www.illumina.com</a> <br /><a href="http://www.iontorrent.com/">www.iontorrent.com</a> <br /><a href="http://www.sequenom.com/">www.sequenom.com</a> <br /><a href="http://www.appliedbiosystems.com/">www.appliedbiosystems.com</a> <br /><a href="http://www.454.com/">www.454.com</a> <br /><a href="http://www.appliedbiosystems.com/">www.appliedbiosystems.com</a><br /><br />Genomics in India <br /><a href="http://www.ganitlabs.in/">www.ganitlabs.in</a> <br /><a href="http://www.sandor.co.in/">www.sandor.co.in</a> <br /><a href="http://www.igib.res.in/">www.igib.res.in</a> <br /><a href="http://www.genotypic.co.in/">www.genotypic.co.in</a> <br /><a href="http://www.ocimumbio.com/">www.ocimumbio.com</a> <br /><a href="http://www.abcgenomics.com/">www.abcgenomics.com</a> <br /><a href="http://www.xcelrisgenomics.com/">www.xcelrisgenomics.com</a> <br /><a href="http://www.ayugen.com/">www.ayugen.com</a> <br /><a href="http://www.geneombiotech.com/">www.geneombiotech.com</a> <br /><br /> Large Global Whole Genome Companies <br /><a href="http://www.decode.com/">www.decode.com</a> <br /><a href="http://www.23andme.com/">www.23andme.com</a> <br /><a href="http://www.navigenics.com/">www.navigenics.com</a><br />www.pathway.com<br /><br /> Global companies offering genomics services <br /><a href="http://www.asuragen.com/">www.asuragen.com</a> <br /><a href="http://www.baseclear.com/">www.baseclear.com</a> <br /><a href="http://www.agtcenter.com/">www.agtcenter.com</a> <br /><a href="http://www.ambrygen.com/">www.ambrygen.com</a> <br /><a href="http://www.arosab.com/">www.arosab.com</a> <br /><a href="http://www.agrf.org.au/">www.agrf.org.au</a> <br /><a href="http://www.beckmangenomics.com/">www.beckmangenomics.com</a> <br /><a href="http://www.genomics.cn/">www.genomics.cn</a> <br /><a href="http://www.bsf.a-star.edu.sg/">www.bsf.a-star.edu.sg</a> <br /><a href="http://www.cbm.fvg.it/">www.cbm.fvg.it</a> <br /><a href="http://www.cincinnatichildrens.org/">www.cincinnatichildrens.org</a> <br /><a href="http://www.cofactorgenomics.com/">www.cofactorgenomics.com</a> <br /><a href="http://www.covance.com/">www.covance.com</a> <br /><a href="http://www.dnalandmarks.ca/">www.dnalandmarks.ca</a> <br /><a href="http://www.dnavision.com/">www.dnavision.com</a> <br /><a href="http://www.expressionanalysis.com/">www.expressionanalysis.com</a> <br /><a href="http://www.fasteris.com/">www.fasteris.com</a> <br /><a href="http://www.gatc-biotech.com/">www.gatc-biotech.com</a> <br /><a href="http://www.genesdiffusion.com/">www.genesdiffusion.com</a> <br /><a href="http://www.geneseek.com/">www.geneseek.com</a> <br /><a href="http://www.geneticvisions.com/">www.geneticvisions.com</a> <br /><a href="http://www.geneworks.com.au/">www.geneworks.com.au</a> <br /><a href="http://www.genizon.com/">www.genizon.com</a> <br /><a href="http://www.genoskan.dk/uk">www.genoskan.dk/uk</a> <br /><a href="http://www.gpbio.jp/">www.gpbio.jp</a> <br /><a href="http://www.igatechnology.com/">www.igatechnology.com</a> <br /><a href="http://www.igenixinc.com/">www.igenixinc.com</a> <br /><a href="http://www.auxologico.it/">www.auxologico.it</a> <br /><a href="http://www.lifeandbrain.com/">www.lifeandbrain.com</a> <br /><a href="http://www.macrogen.co.kr/eng">www.macrogen.co.kr/eng</a> <br /><a href="http://www.gqinnovationcenter.com/">www.gqinnovationcenter.com</a> <br /><a href="http://www.mftservices.de/">www.mftservices.de</a> <br /><a href="http://www.ncgr.org/">www.ncgr.org</a> <br /><a href="http://www.ramaciotti.unsw.edu.au/">www.ramaciotti.unsw.edu.au</a> <br /><a href="http://www.rikengenesis.jp/">www.rikengenesis.jp</a> <br /><a href="http://www.sabiosciences.com/">www.SABiosciences.com</a> <br /><a href="http://www.sequensysbio.com/">www.sequensysbio.com</a> <br /><a href="http://www.servicexs.com/">www.servicexs.com</a> <br /><a href="http://www.snp-genetics.com/">www.snp-genetics.com</a> <br /><a href="http://www.takara-bio.com/">www.takara-bio.com</a> <br /><a href="http://www.gen-probe.com/">www.gen-probe.com</a> <br /><a href="http://www.traitgenetics.com/">www.traitgenetics.com</a></p></div></div>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/2334/binc-bioinformatics-national-certification-website-address</guid>
	<pubDate>Wed, 14 Aug 2013 09:40:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/2334/binc-bioinformatics-national-certification-website-address</link>
	<title><![CDATA[BINC (BioInformatics National Certification) Website address]]></title>
	<description><![CDATA[<p><span>BINC (BioInformatics National Certification) is an initiative of Department of Biotechnology(DBT), Government Of India in coordination with Bioinformatics Center, University of Pune. The objective of the examination is to recognize trained manpower in the area of Bioinformatics. Currently, various Indian universities, Government and private institutions are involved in imparting courses in Bioinformatics in India.</span></p>
<p>Foreign nationals intending to have certification are eligible to appear for BINC examination.<br>Minimum qualification includes a degree from a recognized university/institute in the areas listed in FAQ.<br>Formal training in the area of Bioinformatics is not a prerequisite.<br>Note that the foreign students will only be certified by DBT and are not eligible for the cash award as well as junior research fellowship.</p><p>Address of the bookmark: <a href="http://binc.scisjnu.ernet.in/" rel="nofollow">http://binc.scisjnu.ernet.in/</a></p>]]></description>
	<dc:creator>Kamalakshi Mukherjee</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/4090/computational-biology-in-the-21st-century-making-sense-out-of-massive-data</guid>
	<pubDate>Thu, 29 Aug 2013 08:32:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/4090/computational-biology-in-the-21st-century-making-sense-out-of-massive-data</link>
	<title><![CDATA[Computational Biology in the 21st Century: Making Sense out of Massive Data]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/I99UiA_vaJQ" frameborder="0" allowfullscreen></iframe>Computational Biology in the 21st Century: Making Sense out of Massive Data    
    
Air date:  Wednesday, February 01, 2012, 3:00:00 PM
Category:  Wednesday Afternoon Lectures  
 
Description:  The last two decades have seen an exponential increase in genomic and biomedical data, which will soon outstrip advances in computing power to perform current methods of analysis. Extracting new science from these massive datasets will require not only faster computers; it will require smarter algorithms. We show how ideas from cutting-edge algorithms, including spectral graph theory and modern data structures, can be used to attack challenges in sequencing, medical genomics and biological networks. 

The NIH Wednesday Afternoon Lecture Series includes weekly scientific talks by some of the top researchers in the biomedical sciences worldwide. 

Author:  Dr. Bonnie Berger  
Runtime:  00:58:06  
Permanent link:  http://videocast.nih.gov/launch.asp?17563]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/2461/taverna-workflow-management-system</guid>
	<pubDate>Thu, 15 Aug 2013 19:34:32 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/2461/taverna-workflow-management-system</link>
	<title><![CDATA[Taverna Workflow Management System]]></title>
	<description><![CDATA[<p>Taverna is an open source domain independent Workflow Management System &ndash; a suite of tools used to design and execute scientific workflows. Taverna has been created by the myGrid project and is funded through a range of organisations and projects.</p>
<p>The Taverna suite is written in Java and includes the Taverna Engine(used for enacting workflows) that powers both the Taverna Workbench(the desktop client application) and the Taverna Server (which allows remote execution of workflows). Taverna is also available as a Command Line Tool for a quick execution of workflows from a terminal.</p><p>Address of the bookmark: <a href="http://www.taverna.org.uk/" rel="nofollow">http://www.taverna.org.uk/</a></p>]]></description>
	<dc:creator>Madhvan Reddy</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/2699/translational-bioinformatics-transforming-300-billion-points-of-data</guid>
	<pubDate>Tue, 20 Aug 2013 19:03:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/2699/translational-bioinformatics-transforming-300-billion-points-of-data</link>
	<title><![CDATA[Translational Bioinformatics: Transforming 300 Billion Points of Data]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/o4KNG7nd938" frameborder="0" allowfullscreen></iframe>Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics, Therapeutics, and New Insights into Disease      
      
Air date:  Wednesday, June 20, 2012, 3:00:00 PM
Time displayed is Eastern Time, Washington DC Local  
 
Description:  There is an urgent need to translate genome-era discoveries into clinical utility, but the difficulties in making bench-to-bedside translations haven't been well described. The nascent field of translational bioinformatics may help. Dr. Butte's lab at Stanford University builds and applies tools that convert more than 300 billion points of molecular, clinical, and epidemiological data (measured by researchers and clinicians over the past decade) into diagnostics, therapeutics, and new insights into disease. Dr. Butte, a bioinformatician and pediatric endocrinologist, will highlight his lab's work on using publicly available molecular measurements to find new uses for drugs, discovering new treatable mechanisms of disease in type 2 diabetes, and evaluating patients presenting with whole genomes sequenced. 

The NIH Wednesday Afternoon Lecture Series includes weekly scientific talks by some of the top researchers in the biomedical sciences worldwide. 

For more information, visit: 
The NIH Director's Wednesday Afternoon Lecture Series  
Author:  Atul Butte, M.D., Ph.D., Stanford University  
Runtime:  01:07:42  
Permanent link:  http://videocast.nih.gov/launch.asp?17321]]></description>
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4835/chang-lab</guid>
  <pubDate>Tue, 24 Sep 2013 17:25:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[Chang lab]]></title>
  <description><![CDATA[
<p>The Chang lab is focused on how the activities of hundreds or even thousands of genes (gene parties) are coordinated to achieve biological meaning. We have pioneered methods to predict, dissect, and control large-scale gene regulatory programs; these methods have provided insights into human development, cancer, and aging. A particular interest is how cells know and remember their locations in the body, particularly with the help of long noncoding RNAs.</p>

<p>More at http://changlab.stanford.edu/index.html</p>
]]></description>
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