BOL: Related items

MetaPred2CS

Manisha Mishra — Fri, 03 Mar 2017 05:15:07 -0600

MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that combines 6 individual sequence based protein-protein interaction prediction methods to predict prokaryotic two-component system protein-protein interactions (PPIs). The methods implemented in MetaPred2CS are 2 co-evolutionary methods: in-silico two hybrid (i2h) and mirror tree (MT) methods and 4 genomics context based methods: phylogenetic profiling (PP), gene fusion (GF), gene neighbourhood (GN) and and gene operon methods (GO).

http://metapred2cs.ibers.aber.ac.uk/

Address of the bookmark: https://github.com/martinjvickers/MetaPred2CS

Foldit: Solve Puzzles for Science

Robert M Willioms — Thu, 21 Dec 2017 15:17:47 -0600

Foldit is an online puzzle video game about protein folding. It is part of an experimental research project developed by the University of Washington, Center for Game Science, in collaboration with the UW Department of Biochemistry. The objective of Foldit is to fold the structures of selected proteins as perfectly as possible

https://fold.it/portal/

Address of the bookmark: https://fold.it/

New Release of RefSeq !

Abhi — Tue, 16 Jul 2024 10:09:21 -0500

Check out RefSeq release 225, now available online and from the FTP site. You can access RefSeq data through NCBI Datasets.

What’s included in this release?

As of July 8, 2024, this full release incorporates genomic, transcript, and protein data containing:

448,507,905 records
334,845,613 proteins
63,542,774 RNAs
Sequences from 152,668 organisms

The release is provided in several directories as a complete dataset and also as divided by logical groupings.

Mike Ritchie Lab

Wed, 02 Oct 2013 15:25:45 -0500

Mike Ritchie Lab primary research focus is the detection of susceptibility genes for common diseases such as cancer, diabetes, hypertension, and cardiovascular disease, among others. The approaches will involve the development and application of new statistical methods with a focus on the detection of gene-gene interactions associated with human disease.

Gene expression and protein expression patterns between normal and non-normal tissues is a growing area of research that may lead to the identification of candidate genes for understanding the etiology of common, complex diseases.

Lab homepage @ http://ritchielab.psu.edu/ritchielab/

UCSC Genome Browser and Blat software !

Jit — Thu, 18 Feb 2016 03:18:57 -0600

This directory contains Genome Browser and Blat application binaries built for standalone
command-line use on various supported Linux and UNIX platforms. To determine which set of binaries
to download, type "uname -a" on the command line to display your machine type. In most cases the
usage statement for the application can be viewed by running the binary with no arguments.

The UCSC Genome Browser and Blat software are free for academic, nonprofit, and personal use. A
license is required for commercial download and installation of these binaries, with the exception
of items built from the following source code directories, which are freely available for all uses:

- kent/src/utils (includes big* tools)
- kent/src/lib
- kent/src/hg/autoSql
- kent/src/hg/autoXml

For information about commercial licensing of the Genome Browser software, see
http://genome.ucsc.edu/license/. The Blat and In-Silico PCR software may be commercially
licensed through Kent Informatics (http://www.kentinformatics.com).

More at http://hgdownload.cse.ucsc.edu/admin/exe/

Address of the bookmark: http://hgdownload.cse.ucsc.edu/admin/exe/

GKNO

Neel — Fri, 20 May 2016 18:56:37 -0500

gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno.

http://gkno.me/how-to/install.html

http://gkno.me/software.html

Address of the bookmark: http://gkno.me/

Salzberg lab

Mon, 15 May 2017 05:14:01 -0500

We are a computational biology lab that develops novel methods for analysis of DNA and RNA sequences. Our research includes software for aligning and assembling RNA-seq data, whole-genome assembly, and microbiome analysis. We work closely with biomedical scientists to apply these methods to current problems arising in a broad spectrum of biological and medical research areas. We’re also part of the Center for Computational Biology, a group of 20+ faculty members and their labs at Johns Hopkins working on computational, statistical, and mathematical methods that can turn massive genomic data sets into biologically and clinically useful information.

https://salzberg-lab.org/

simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data

Jit — Tue, 28 Nov 2017 06:49:11 -0600

simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software. By default, observations only incorporate noise due to sequencing and do not incorporate effects from more esoteric sources of noise that may be present in real data ("dust", bubbles, merged clusters, sequence-heterogeneous clusters, etc). Many of these additional sources may optionally applied.

simNGS takes fasta format sequences and a file describing the covariance of noise between bases and cycles observed in an actual run of the machine, randomly generates noisy intensities representing the signals for the sequence at each cycle and calculates likelihoods for all possible base calls.

Address of the bookmark: https://www.ebi.ac.uk/goldman-srv/simNGS/

GenomeThreader: Gene Prediction Software

Neel — Wed, 03 Oct 2018 15:34:08 -0500

GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments. GenomeThreader was motivated by disabling limitations in GeneSeqer, a popular gene prediction program which is widely used for plant genome annotation.

Address of the bookmark: http://genomethreader.org/

Awesome perl frameworks, libraries and software - PART 4

Neel — Fri, 07 Jul 2017 04:11:54 -0500

tjstein/php5-fpm-munin-plugins - A set of Munin plugins for PHP5-FPM
perusio/nginx-munin - A set of plugins for monitoring nginx with Munin
openresty/lua-resty-memcached - Lua memcached client driver for the ngx_lua based on the cosocket API
jayjanssen/myq_gadgets - Various iostat style scripts for MySQL
apt-mirror/apt-mirror - Official apt-mirror source.
kentaro/cinnamon - a simple deploy tool
mdom/dategrep - print lines matching a date range
kazuho/jailing - super-easy chroot jail builder/runner for Linux
teleshoes/tpacpi-bat - ThinkPad ACPI Battery Util
hechtus/squeezebox-googlemusic - Squeezebox (Logitech Media Server) Plugin for Google Play Music
hexchat/hexchat-addons - Plugins and scripts made for HexChat
berekuk/Ubic - Polymorphic service manager.
deryckoe/Wordpress-Syntax-Mode-for-Coda-2 - Wordpress Syntax Mode working on Coda 2.0.2
squentin/gmusicbrowser - jukebox for large collections of music
autodl-community/autodl-irssi - A community-driven fork of autodl-irssi
yoshiki/markdown2impress - markdown2impress is script to convert markdown into presentation using impress.js.
pagespeed/cpanel - mod_pagespeed module for CPanel WHM
liyanage/xcode-text-macros - Some XCode text macros plus a macro overview HTML page generator
erlang/eep - Erlang Enhancement ProposalS
Koha-Community/Koha - Koha is a free software integrated library system (ILS). Koha is distributed under the GNU GPL version 3 or later. Note: this is a synced mirror of the official Koha repo.
vti/bootylicious - LIghtweight blog engine on Mojo steroids!
tokuhirom/Furl - pretty fast http client library for perl5
miyagawa/Carmel - CPAN Artifact Repository Manager
combinatorylogic/clike - A simple C-like language compiler with an extensible syntax and typed macros support
cloudflare/CloudFlare-Tools - Tools which enable you to get the full benefit of using the CloudFlare service.
untoldwind/alfred2-layout - Alfred 2 Layout workflow
nothingmuch/kiokudb - KiokuDB Core
katzgrau/chip - A log file multiplexer and monitor. Tail multiple remote or local log files, set actions, and more. A friend to every developer and system admin. Alpha.
SethRobertson/git-what-branch - Discover what branch a commit is on, or how it got to a named branch
shabble/irssi-docs - In-depth documentation of the Irssi IRC Client
kappa/yadisk-sync - Linux syncronizer for Yandex.Disk
dotse/dnscheck - DNSCheck code, DNS delegation quality checker.
darold/pgcluu - PostgreSQL Cluster performances monitoring and auditing tool
cfengine/design-center - CFEngine community-contributed content
bestpractical/sd - A distributed issue tracker; upstream is now http://gitorious.org/prophet
masak/proto - A a hyper-lightweight dependency tracking and project installation system
liblime/LibLime-Koha - LibLime Koha is the most mature of the open source ILS applications. Based on the ground-breaking 3.0 platform (derived from the original Koha offering of 1999), LibLime Koha is a completely web-based open source ILS, with library staff, systems librarians, and library users all accessing LibLime Koha through a web browser. Relying on the MySQL relational database, all LibLime Koha data is readily accessible.
ingydotnet/... - Dot Dot Dot
gusmaskowitz/apachebuddy.pl - Not written by me, maintained by me : Apachebuddy.pl
zaf/asterisk-googletts - Asterisk AGI script that uses Google's translate text to speech service.
openresty/lua-resty-core - New FFI-based API for lua-nginx-module
openSUSE/kiwi - KIWI OS Image builder
FastVPSEestiOu/Antidoto - Linux antimalware and antirootkit tool
sorin-ionescu/dotfiles - My command line life.
oetiker/smokeping-3.x - reengineered SmokePing, using Extopus as its frontend
nekokak/p5-Teng - simple DBI wrapper/ORMapper
faiproject/fai - non-interactive system to install, customize and manage Linux systems
abh/ntppool - NTP Pool Project
willixix/naglio-plugins - Monitoring Plugins by William Leibzon
stealth/troubleshooter - setroubleshootd xSports
openresty/lua-resty-string - String utilities and common hash functions for ngx_lua and LuaJIT
mdxp/cookbooks - My custom Cookbooks for Chef
ingydotnet/vroom-pm - Vim Based Slideshow Presentations
iamcal/Flickr-StatsD - Mirror of code.flickr.com: Flickr-StatsD
ernstsson/Arqua - Architectural quality analysis tool for GCC project
qiaoxueshi/FLEXLoader - A jailbreak iOS device tweak which can load FLEX dynamiclly
punchdrunker/iOSEmoji - information about unicode6 emoji used in iOS5
openresty/replace-filter-nginx-module - Streaming regular expression replacement in response bodies
djabberd/DJabberd - The main DJabberd source
darold/pgFormatter - A PostgreSQL SQL syntax beautifier that can work as a console program or as a CGI. Download from https://sourceforge.net/p/pgformatter/ and demo site at http://sqlformat.darold.net/
aspiers/mysqldiff - tool and CPAN suite backend for comparing MySQL database schemas
michaeldexter/vmrc - Virtual Machine rc script
keydet89/RegRipper2.8 - RegRipper version 2.8
kazuho/kaztools - shellscripts and utilities for myself
gknops/adHocGenerate - Wireless ad hoc distribution of iOS applications
book/Act - A Conference Toolkit (Git conversion of the Subversion repository)
turingou/docor - a smart and tiny README maker using default manifest package.json
rjbs/Soviet-Minecraft - a gross hack for chatty control of Minecraft
osklil/hls-fetch - Download and decrypt videos served by the HTTP Live Streaming (HLS) protocol.
alestic/ec2-expire-snapshots - Delete expired EBS snapshots in Amazon EC2. Install on Ubuntu with: sudo add-apt-repository -y ppa:alestic && sudo apt-get update && sudo apt-get install -y ec2-expire-snapshots
rpetrich/objc_api_visibility - Private API checker for iOS. Requires class-dump-z to be in the PATH
mojombo/gollum-demo - Gollum test repo
mikecardwell/gpgit - Encrypt Email using GnuPG and a pipe
lxctl/lxctl - vzctl like utilities for lxc
justone/dfm - dotfiles manager
miyagawa/cpanfile - Yet another way to declare CPAN dependencies
imatix/gitdown - Turn github into your publishing platform
grayhemp/pgtoolkit - Tools for PostgreSQL maintenance
domm/App-TimeTracker - distributed timetracking from the commandline
xaicron/mysqlenv - mysql binary manager
tagomoris/fluent-agent-lite - Lightweight log delivery agent works w/ fluentd
openresty/lua-resty-upstream-healthcheck - Health Checker for Nginx Upstream Servers in Pure Lua
niXman/mingw-builds - Scripts for building the dual-target(32 & 64 bit) MinGW-W64 compilers for 32 and 64 bit Windows
lvc/abi-compliance-checker - A tool for checking backward API/ABI compatibility of a C/C++ library
chilts/cil - DVCS backed issue tracking system
TooTallNate/node-cgi - An http/stack/connect layer to invoke and serve CGI executables.
CityGenerator/CityGenerator - CityGenerator is a tool for generating a setting for Fantasy Roleplaying games.
yoshinorim/mha4mysql-node - Development tree of Master High Availability Manager and tools for MySQL (MHA), Node (MySQL Server) part
Netflix-Skunkworks/jenkins-cli - Simple Jenkins Command Line Interface
vrtadmin/clamav-faq - ClamAV FAQ
ssinyagin/gerty - A universal framework for device management automation. Eventually a replacement for RANCID... and much more
quran/quran.com-images - images using fonts from King Fahed Complex / qurancomplex.com
matschaffer/profile - My Bash profile
jigish/dotfiles - My configs
darold/ora2pg - Ora2Pg is a free tool used to migrate an Oracle database to a PostgreSQL compatible schema. It connects your Oracle database, scan it automaticaly and extracts its structure or data, it then generates SQL scripts that you can load into PostgreSQL.
castaway/dbix-class-book - DBIx::Class book
brucemiller/LaTeXML - LaTeXML is a TeX and LaTeX to XML translator.
OpenDDRdotORG/OpenDDR-Resources - OpenDDR resources
revmischa/rtsp-server - Lightweight RTSP/RTP streaming media server
oetiker/znapzend - zfs backup with remote capabilities and mbuffer integration.
cardinal/cardinal - Cardinal - Ruby compiler for Parrot
LibreCat/Catmandu - https://metacpan.org/pod/Catmandu
rdvn/zabbix-templates - Various Zabbix templates
mischat/shareNice - An ethical way of adding social sharing features to your website, without compromising your users' privacy by dropping tracking cookies on them.
kayac/isucon3 - ISUCON3
coryarcangel/Pizza-Party-0.1.b - Order pizza over the commandline (circa 2004)
msparks/irssiscripts - Scripts for the Irssi IRC client
mogui/MDWamp - MDWamp is a client side objective-C implementation of the WebSocket subprotocol WAMP.
michaeljamesfitzgerald/Introducing-Regular-Expressions - Example code and target text files for the O'Reilly book Introducing Regular Expressions
jeffreykegler/Marpa--R2 - Parse any language you can describe in BNF -- Release 2
glensc/nagios-plugin-check_raid - Nagios/Icinga plugin to check current server's RAID status
futuretap/iTunesFeaturedCheck - Scrapes the App Store and finds out whether an app is featured on either the App Store homepage or in a specific category
yepher/RaZBerry - Notes About ZWave and RazBerry
tokuhirom/Minilla - Authorizing tool for CPAN modules
rgeissert/http-redirector - Debian mirrors HTTP redirector
oetiker/rrdtool-2.x - RRDtool 2.x - The Time Series Database
mindreframer/nginx-lua-stuff - some libs for NginX-Lua integration
crowbar/barclamp-nagios - [UNMAINTAINED] Crowbar Nagios: System Monitoring
andk/cpanpm - CPAN.pm
moritz/ilbot - IRC logging bot and web frontend
meso-cacase/difff - Webベースのテキスト比較ツール difff《ﾃﾞｭﾌﾌ》
elliotchance/mbzdb - Port of the MusicBrainz database to run on other RDBMSs with replication (previously named MB_MySQL.)
trapd00r/vidir - edit directory in $EDITOR (better than vim . with netrw)
evalEmpire/gitpan - Git repositories for all of CPAN
pagekite/Colormake - A simple wrapper around make to colorize the output.
manuelkasper/AS-Stats - A simple tool to generate per-AS traffic graphs from NetFlow/sFlow records
kazeburo/Monoceros - PSGI/Plack server with event driven connection manager, preforking workers
justintime/nagios-plugins - Collection of some handy Nagios plugins
justingit/dada-mail - Dada Mail is a simple, web-based mailing list manager. It totally rules.
grantm/bcvi - Back-channel vi
JeremyJones/Apachetop - apachetop is a console-based tool for monitoring the threads and overall performance of a set of Apache web servers.
garu/tweetylicious - a Twitter-like microblogging app in just one file
doujiang24/lua-resty-kafka - Lua kafka client driver for the ngx_lua based on the cosocket API
HikariKnight/rsu-client - A git repository for the RuneScape Linux/Unix Client Project
wimpunk/ddclient - Fork of the original ddclient code
tokuhirom/tora - Tora! Tora! Tora!
stepb/urxvt-tabbedex - Tabbed plugin for rxvt-unicode with many enhancements
rafl/moosex-declare - Declarative syntax for Moose
pobox/Moonpig - the moonpig billing system
fink/fink - The fink package manager
theiostream/theos-ref - Theos Docs! (because there never was a chapter 2)
robinbowes/flac2mp3 - flac2mp3 is a tool to convert audio files from flac to mp3 format including the copying of tags.
rayman813/coda2-mode-wordpress - Wordpress Syntax Mode/Highlight/Autocomplete for Coda 2
hackman/linux-sysadmin-course - Linux System Administration 101
deepakdaswani/whatsapp_discover - "Whatsapp Discover" is a tool for getting phone numbers of devices using Whatsapp by real time sniffing from an interface (disabled in this first version) or from a list of pcap files, which can be processed in batch
calio/form-input-nginx-module - This is a nginx module that reads HTTP POST and PUT request body encoded in "application/x-www-form-urlencoded", and parse the arguments in request body into nginx variables.
bloonix/awesant - Awesant is a log shipper for logstash.
AndriiGrytsenko/openssh-ldap-publickey - Wrapper for OpenSSH to store public keys inside the OpenLDAP entry.
nikyoudale/symbolicatecrash-mac - A version of the symbolicatecrash script that works for Mac app crash logs
mhwest13/Memcached-Munin-Plugin - Memcached Munin Plugins
knmnyn/ParsCit - An open-source CRF Reference String Parsing Package
c9s/App-gh - GitHub Command-line Utility.
bradfitz/shipit - Software Release Tool
sukria/WebKeePass - Web interface over a KeePass database
naturalist/kelp - A web framework light, yet rich in nutrients.
kirei/catt - Certification Authority Trust Tracker
kazuho/Starlet - a Plack Server, formerly known as Plack::Server::Standalone::Prefork::Server::Starter
dolmen/github-keygen - Easy creation of secure SSH configuration for your Github account(s)
bigplum/nginx-tcp-lua-module - A TCP server with lua supporting based on nginx
baohaojun/ajoke - Abducting Java Onto Emacs, K is silent.
apache/spamassassin - Read-only mirror of Apache SpamAssassin. Submit patches to https://bz.apache.org/SpamAssassin/. Do not send pull requests
tsee/Games-Lacuna-Client - A client for the Lacuna Expanse
sitaramc/gitpod - local caching server for git when the actual server is on the other side of a (possibly slow) WAN link
mjdominus/git-util - Miscellaneous git scripts and utilities
kevina/wordlist - SCOWL (and friends).
franckcuny/jitterbug - Cross Language Continuous Integration for Git
fastmail/towncrier - A status dashboard
collectiveintel/cif-v1 - the fastest way to consume threat intelligence.
anestisb/WeBaCoo - Web Backdoor Cookie Script-Kit
Tarrasch/zsh-autoenv - Autoenv for zsh
xme/hoover - Wireless Probe Requests Sniffer
spencertipping/caterwaul - A Javascript-to-Javascript compiler
openresty/lua-redis-parser - Lua module for parsing raw redis responses
mpeters/smolder - Web-based Continuous Integration Smoke Server
madscientist/msjnc - MadScientist Juniper Network Connect Session Manager
kfdm/irssi-growl - Growl notification script for irssi
jimsalterjrs/sanoid - Policy-driven snapshot management and replication tools. Currently using ZFS for underlying next-gen storage, with explicit plans to support btrfs when btrfs becomes more reliable. Primarily intended for Linux, but BSD use is supported and reasonably frequently tested.
duritong/puppet-nagios - a nagios module for puppet
szabgab/screencasts - The translated captions of my screencasts
openresty/resty-cli - Fancy command-line utilities for OpenResty
kre/Kinetic-Rules-Engine - Source code for KRE
helloandre/cr48 - my programs that i've put on cr48
csirtgadgets/massive-octo-spice - the fastest way to consume threat intelligence
agentzh/sshbatch - SSH::Batch for cluster operations
SPORE/api-description - SPORE description for API
xilinus/prototypeui - Prototype UI
tagomoris/isucon - isucon web applications and tools
perl6/doc - Perl 6 documentation (tools and docs)
hirose31/redis-traffic-stats - Redis query analyzer for counting, traffic stats by command
gjreda/pydata2014nyc - Materials for my pandas tutorial at PyData 2014, NYC
genaev/vmd - vkontakte music downloader
dalibo/sqlserver2pgsql - Migration tool to convert a Microsoft SQL Server Database into a PostgreSQL database, as automatically as possible
symkat/Stalker - Records and correlates nick!user@host information
lvc/japi-compliance-checker - A tool for checking backward API/ABI compatibility of a Java library
justinabrahms/jlilly-bashy-dotfiles - This is a collection of my dotfiles not related to either vim or emacs. Mostly just bashy stuff.
interchange/interchange - Interchange
ingydotnet/jemplate - Industrial strength JavaScript template framework
depesz/explain.depesz.com - Webpage for showing easier to read version of PostgreSQL explains
Webconverger/webc - Webconverger's curated chroot from which updates originate
SSLMate/sslmate - The SSLMate Client - Buy and Manage SSL Certs from the Command Line
stayradiated/dotfiles - Just my configs for CRUX and OS X
openresty/lua-resty-lock - Simple nonblocking lock API for ngx_lua based on shared memory dictionaries
nickspacek/Net-Google-Tasks - Interface to Google Tasks
jdavis/dotfiles - Config files for various things
evadne/LESS.mode - LESS syntax mode for SubEthaEdit and Coda
dotse/zonemaster - The Zonemaster Project
darold/squidanalyzer - Squid Analyzer parses Squid proxy access log and reports general statistics about hits, bytes, users, networks, top URLs, and top second level domains. Statistic reports are oriented toward user and bandwidth control.
vti/showmetheshell - HTML5 WebSocket Shell
oalders/http-browserdetect - Determine the Web browser, version, and platform from an HTTP user agent string
marksteele/collectd-plugins - Collectd Plugins
kristofg/rifec - Receive Images From Eye-Fi Cards
kirei/fpdns - Net::DNS::Fingerprint
gjospin/PhyloSift - Phylogenetic and taxonomic analysis for genomes and metagenomes
chrispix/symbolicatecrash-fix - A patch of Apple's symbolicatecrash script, broken in XCode4
billkarwin/bk-tools - Scripts I wrote to help using MySQL and Percona products.
adelton/docker-freeipa - FreeIPA server and client in Docker containers; see hub.docker.com for the images:
OWASP/O-Saft - O-Saft - OWASP SSL audit for testers
yllan/moedict-mac - 轉換教育部國語辭典為 Mac 內建字典
tokuhirom/cpan-outdated - detect outdated CPAN modules
openwebwork/webwork2 - Course management front end for WeBWorK
nicolaspanel/libsvm.net - An easy way to use Support Vector Machines in your .NET projects (c# code)
jodrell/unbound-block-hosts - a script to convert Dan Pollock's ad blocking hosts file into Unbound local-data.
davepacheco/jsstyle - cstyle-based JavaScript style checker
cloudflare/lua-resty-cookie - Lua library for HTTP cookie manipulations for OpenResty/ngx_lua
c9s/github-taiwan - Taiwan Developers on Github
PadreIDE/Padre - Offical repository of the core Padre code
rovo89/XposedTools - These tools can be used to compile and package the Xposed framework.
openresty/nginx-devel-utils - Utilities for nginx module development
openSUSE/obs-build - OBS build script, can be used with OBS or stand alone
nichtich/ditaa-markdown - process ditaa diagrams embedded in pandoc markdown
bestpractical/prophet - A disconnected, replicated p2p database -- upstream is now http://gitorious.org/prophet
aparks517/convert-websters - Convert Webster's Unabridged Dictionary from Project Gutenberg to OSX dictionary
ap/titlecase - An attempt to refactor John Gruber’s Title Case program
yko/mojo.vim - Vim syntax for mojo epl templates in Mojo projects
tseemann/prokka - Rapid prokaryotic genome annotation
peterkeen/calorific - Command-line nutrient tracking tool
openresty/lua-resty-dns - DNS resolver for the nginx lua module
maxmind/MaxMind-DB - Spec and test data for the MaxMind DB file format
kazeburo/Kurado - monitor metrics
bigpresh/Dancer-Plugin-Database - Dancer::Plugin::Database - easy database support for Dancer applications
BaldMansMojo/check_vmware_esx - chech_vmware_esx Fork of check_vmware_api.pl
vanstyn/RapidApp - Turnkey ajaxy webapps
taylorchu/baker - The bash static site generator with real template engine
sujaikumar/assemblage - Tools for working with second gen assemblies, fasta sequences, etc
obfuscurity/nagios-scripts - Custom scripts written for Nagios
miyagawa/AnyEvent-Twitter-Stream - AnyEvent based Twitter stream consumer
miyagawa/AnyEvent-Redis - Asynchronous Redis client
drdrang/tp-planner - A set of scripts for printing TaskPaper documents compactly for inserting into a "Junior" sized planner.
ccurtsinger/stabilizer - Stabilizer: Rigorous Performance Evaluation
zrlram/afterglow - graph visualization tool
utcompling/OpenNLP-Models - A project for code to create models from existing corpora and distribute models.
theory/dbix-connector - Fast, safe DBI connection management
redondos/mutt - mutt configuration
p5-app-adventcalendar/p5-app-adventcalendar - let's make advent calendar!
motemen/Teto - nicovideo stream player
lifeforms/irssi-smartfilter - Irssi JOIN/QUIT smart filter for busy channels
genehack/app-gitgot - A tool to make it easier to manage multiple code repositories using different VCSen
ytoolshed/multipkg - Automation for package builds
willemk/varnish-mobiletranslate - Tool to translate the latest mobile detect script into varnish
sashahilton00/spotify-connect-resources - A repository to hold any data/stuff related to reversing the Spotify Connect protocol. Mostly just data dumps at the moment, but if you have something to add to it, be it an implementation, information or just another data dump, make a PR and I will add it asap.
kumina/nagios-plugins-kumina - A collection of Nagios plugins that we package.
jbergantine/django-template.mode - Django Template Syntax mode for Panic Coda 2
jasta/android-dev-tools - Collection of developer tools for working with Android.
devel/PowerDNS-API - HTTP API for the PowerDNS Database
daniel-nichter/hackmysql.com - Deprecated tools from HackMySQL.com
agentzh/cheater - A tool and a language that help generating random complex database instance based on predefined rules
GMOD/GBrowse - the Generic Genome Browser
yaoweibin/nginx_limit_access_module - support to deny specific variable with HTTP POST interface
yanick/git-cpan-patch - System to write patches against CPAN modules via Git
synacorinc/dtk - DTK (data toolkit) is a suite of tools for parsing, analyzing, and graphing logs and other datasets.
schweikert/postgrey - Postfix Greylisting Policy-Daemon
noodba/myawr - awr of MySQL
marcusramberg/Mojolicious-Plugin-OAuth2 - OAuth support for Mojolicious
lukeredpath/LRMocky - A port of jMock 2.0 for Objective-C
linux-test-project/lcov - LCOV
gamelinux/echidna - Network Security Monitoring Framework
datameet/india-election-data - To map publicly available datasets related to General Assembly (Lok Sabha) elections in India.
cmatsuoka/figlet-fonts - A collection of fonts for FIGlet
ambs/Books - My repository to book projects... if I eventually have the guts to write more than one...
abw/Template-TT3 - A working prototype of the TT3 template language
yasuaki/git-doc-ja - Japanese translation of git/Documentation/
xdata-skylark/libskylark - Sketching-based Distributed Matrix Computations for Machine Learning
typester/nim - minimal command-line based contents generator
trapd00r/utils - Small useful utilities for everyday work
plack/Plack-Middleware-Session - A very minimalist session library for Plack
openxpki/openxpki - OpenXPKI Code
onishi/mysqldiff - mysqldiff - mysql scheme diff
mikegrb/App-otfile - Serve a single file, once, via HTTP over the local network.
mikebrittain/Wesley - Compress and optimize the JPEG, PNG, and GIF files used in your site’s HTML and CSS.
kthakore/frozen-bubble - Making frozen bubble cross platform
hluk/vimColorsToQtCreator - Convert vim color schemes so they can be used in Qt Creator.
cvicente/Netdot - Network Documentation Tool
ciembor/TerminalHero - Linux society's response to Guitar Hero. :)
carloslima/dhsnapshot - RSnapshot-like backups to DreamHost Backup Service
alecchen/doxygen-lua - Make Doxygen support Lua
AgileBits/onepassword-utilities - Utilities for 1Password
yrmt/dotfiles - a few of yrmt (beastie)'s dotfiles
willixix/WL-NagiosPlugins - Clone of naglio-plugins repository for those using old name
rafl/moosex-method-signatures - Method declarations with type constraints and no source filter
proftpd/proftpd - ProFTPD source code
plainblack/Wing - Next generation web services toolkit.
msimerson/NicTool - NicTool: a DNS management solution
j0hnnMcCock/fuckNSA - fuckNSA
dbsrgits/sql-translator - SQL::Translator (SQLFairy)
cryptax/dextools - Miscellaenous DEX (Dalvik Executable) tools
cosimo/varnish-accept-language - An experimental VCL extension to squash client Accept-Language headers
catap/nginx-catap - catap's nginx repository
ConSol/omd - OMD - Open Monitoring Distribution Labs Edition
42Lines/cq5tools - Handy CLI tools for working with Adobe's CQ5 CMS product
thomasfrivold/SilentBob - SilentBob Firewall
starlilyth/Linux-PoolManager - Web based miner manager for CGMiner and clones (SGMiner, Keccak, etc) on Linux (PIMP/BAMT/SMOS, Debian, RedHat/Centos).
perl-pod/pod-simple - Framework for Parsing and Formatting POD
openresty/opsboy - A rule-based sysadmin tool that helps setting up complex environment for blank machines
nekokak/qudo - job queue system
moshen/Image-Term256Color - Display images in your 256 color terminal! (kinda) - superseded by https://github.com/moshen/gotermimg
kazuho/cppref - man-style access to cppreference.com documents
jquelin/dist-zilla-plugin-git - dist::zilla plugin to update your git repository after release
jonlives/nagios-jenkins-plugin - A nagios plugin for which lets you check jenkins jobs according to various criteria.
ikebe/Pickles - Tiny Web Application Framework.
gws/munin-plugin-couchdb - Munin plugins for graphing CouchDB statistics.
dyne/gitzone - git-based zone management tool for static and dynamic domains
duggan/shlint - A shell linting utility.
bloonix/logstash-delete-index - A script to delete Elasticsearch indices of Logstash
angavrilov/df-structures - Dwarf Fortress data structure descriptions
alibaba/tengine-website - The source code of Tengine's website (tengine.taobao.org)
SpiderLabs/thicknet - TCP session interception and injection framework
AssetTracker/rt-extension-assettracker - Asset Tracker is an extension for Request Tracker. It integrates asset tracking with your favorite ticketing system.
tokuhirom/Daiku - Yet another build tool on Perl5
schweikert/mailgraph - Mail plotting script
plainblack/Lacuna-Server-Open - The open source Lacuna Server repository.
netoptimizer/IPTV-Analyzer - Fast MPEG2 Transport Stream Analyzer, based on Netfilter kernel module
kvorg/mojo-handbook - Mojolicious Handbook: a temporary documentation resource for Mojolicious
kablamo/VimDebug - Integrate your debugger with Vim. Currently supports Perl, Python, and Ruby. This code is very much in beta.
genome/gms - The Genome Modeling System installer (BETA).
franckcuny/presque - a simple redis/tatsumaki message queue
dgl/cgiirc - CGI:IRC web based IRC client
dann/angelos - yet another web application framework
Bibzball/Git-Mediawiki - Gate between git and mediawiki
trustly/pci-blackbox - PCI-DSS compliant card system built on PostgreSQL and PL/pgSQL
tomill/Template-Semantic - Use pure XHTML/XML as a template
raboof/realtimeconfigquickscan - Linux configuration checker for systems to be used for real-time audio
postcasio/coda2-modes - Syntax modes for Coda 2.
norm/homedir - Public home directory files
nindwen/config - Arch Linux config-files
lvc/pkgdiff - A tool for visualizing changes in Linux software packages
jjn1056/DBIx-Class-Migration - Use DBIC::DeploymentHandler and DBIC::Fixtures together for a sane database versioning workflow
hpcugent/easybuild-easyconfigs - A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
gfx/p5-Data-Validator - Type constraints based data validator for Perl5
evalEmpire/method-signatures - Method and function declarations with signatures, no source filter
yogan/cope - A colourful wrapper for terminal programs
trinityrnaseq/trinityrnaseq - Trinity RNA-Seq de novo transcriptome assembly
tokuhirom/p5-router-simple - simple http router
thiagorondon/OpenData-BR - OpenData-BR
skx/slaughter - The Slaughter system-administration & configuration tool.
mizzy/webiblo - Web to ebook project
miyagawa/Dist-Milla - Opinionated and Unobtrusive distribution builder
meermanr/TVSeriesRenamer - Script for renaming files in a digital video collection. Automatically fetches episode titles from the web.
markround/Cacti-iostat-templates - A set of templates to monitor iostat statistics on Unix systems
gvalkov/gitolite-sshkey-form - A web app for submitting ssh public keys directly to gitolite
ftilmann/latexdiff - Compares two latex files and marks up significant differences between them. Releases on www.ctan.org and mirrors
eprints/eprints - EPrints Core
eksopl/fuuka - Fuuka Imageboard Archiver
aelse/dot-ssh-config - Generate SSH client configurations with support for tunnels
Perl5-Alien/Alien-Base - Base classes for Alien:: modules
Ovid/example-test-training-material - Sample Code From Ovid's Introductory Testing Course
LuRsT/vspark - Like spark, but vertical
DjebbZ/Drupal-PHPStorm-Live-Templates - PHPSTorm Live Templates (aka code snippets) for Drupal 7
zamiron/ru4sphinx - Creating Russian voice model for cmu-sphinx
yappo/p5-Data-Model - Data::Model is Data/Object Mapper and Model Manager.
xaicron/p5-www-youtube-download - YouTube video download interface.
vti/protocol-websocket - Protocol::WebSocket
ukigumo/Ukigumo-Server - This is a ukigumo server application.
treasonx/environment - Personal Environment Files (vim, bash, etc)
sartak/app-nopaste - easy access to any pastebin
rolandwalker/emacs-travis - Travis CI recipe for Emacs libraries.
msimerson/sentry - Bruteforce attack blocker (ssh, FTP, SMTP, and more)
lookout/ngx_borderpatrol - Edge-authentication
ipfire/ipfire-2.x - IPFire 2.x development tree
dgl/cpangrep - Search code on CPAN with Regexps
bugzilla/bugzilla - Read-only mirror of Bugzilla source from git.mozilla.org/bugzilla/bugzilla.git. Tests at https://travis-ci.org/bugzilla/bugzilla –
avar/irssi-bitlbee-facebook-rename - A irssi script to rename chat.facebook.com nicks in bitlbee from e.g. "u1359078110" to "AEvarArnfjord"
artm/qtcreator-solarized-syntax - Solarized style for Qt Creator's syntax highlighter
SharkHunter/Channel - Channel Browse plugin for PMS
OpenElectronicsLab/eeg-mouse - The eeg-mouse is a project to attempt to control a mouse with eeg signals.
yusukebe/App-revealup - HTTP Server app for viewing Markdown formatted text as slides
yappo/JSTAPd - JSTAPd is Ajax application friendly Javascript Unit Test Server.
wayfind/polite - 一个为前端开发者量身打造的Vim配置和插件精选集
smallfish/lua-resty-beanstalkd - non-blocking beanstalkd client lib for ngx_lua
sixteencolors/sixteencolors - Sixteen Colors ANSI/ASCII Art Archive
perigrin/moosex-poe - The illicit love child of Moose and POE
ole-tange/tangetools - Ole Tanges personal tools
nothingmuch/class-mop - Mirror of Class-MOP.git
mjollnir/sf2debpkg - Symfony2 Debian Packaging
miyagawa/plack-dispatching-samples - Examples of Plack dispatcher using various CPAN modules
miyagawa/Webhook-Growler - Receives Web hooks over Reverse HTTP and notifies via Growl
miyagawa/HTTPx-Weblet - the Request/Response objects formerly known as the-old-Plack::Request
miyagawa/Corona - Coro based high-performance, asynchronous PSGI web server
mengwong/org-asana - Roundtrip synchronization and bidirectional replication between Emacs Org-mode and Asana.com.
keydet89/Tools - Tools from WFA 4/e, timeline tools, etc.
kan/moxy - Mobile web development proxy
goccy/p5-Compiler-Tools-CopyPasteDetector - detect Copy and Paste of Perl5 Codes
ctcherry/easy_php_dev - Collection of tools to quickly setup a dynamic PHP dev environment on OSX
chromatic/CPAN-Dark - Manage your own DarkPAN
chansen/p5-http-tiny - Tiny HTTP Client
bobtfish/catalystx-simplelogin - Simple login controller and template bundle for Catalyst
bestpractical/git-sync - A tool to synchronize multiple git repositories
Gilwyad/mailnesia.com - Anonymous Email in Seconds
Ensembl/ensembl-rest - Language agnostic RESTful data access to Ensembl data over HTTP
CalculatedContent/tsvm - experiments testing transductive svm for my blog posts
zby/WebNano - A really minimalistic web framework.
wtsi-hgi/docker-proxify - Allows building and running docker container images from behind a corporate proxy
tokuhirom/p5-psgiref - (DEPRECATED)just a prototype!
robelix/hard-dj - arduino based DJ MIDI cotroller using Harddisks as jog wheels
rjbs/dzil.org - the source for dzil.org
perldoc-jp/module-pod-jp - 日本語訳したモジュールをおく場所その2
motemen/Plack-Middleware-WebSocket - WebSocket handshake helper middleware
kivitendo/kivitendo-erp - Web-based ERP system for the German market
hinrik/hailo - A conversation bot using Markov chains
g0v/moedict-data-csld - 中華語文知識庫資料檔
freenode/gms - Group Management System
doy/reply - read, eval, print, loop, yay!
digitalbazaar/json-ld - A Context-based JSON Serialization for Linked Data
dcantrell/ldap-for-dhcp - OpenLDAP support for dhcpd in ISC dhcp
cjfields/biome - An experimental Moose-based BioPerl implementation
brennen/git-feed - git-feed: a script to generate Atom feeds for git commit logs
bobthecow/PHP-HTML.mode - A fork of Coda 1.x's PHP-HTML syntax mode. Doesn't work with 2.x :(
ant0ine/MongoDB-RDF - Stores RDF-JSON documents in MongoDB
adrian-bl/bitflu - Bitflu BitTorrent Client
MG-RAST/MG-RAST - metagenomic analysis server site code
xaicron/pm-uninstall - Uninstall modules
windytan/bitocular - A tool to quickly examine the general structure of a file.
toreanderson/clatd - A 464XLAT CLAT implementation for Linux
sitaramc/map - Simpler than xargs. More power than xargs.
silvansky/macscripts - My Mac OS X scripts for different needs (may need some of my Mac OS X command line utils)
nekokak/p5-Kamui - Plack base framework
nabokov/mecab-dic-overdrive - create new mecab dic file, with score adjustment in accordance with existing terms.
miyagawa/Catalyst-Engine-PSGI - PSGI engine for Catalyst
melo/scripts - My personal script stash
liedekef/spacewalk_scripts - Several spacewalk scripts
kraih/mojolicio.us - Mojolicious Website
interconnectapp/discuss - A place to discuss interconnect
glidenote/dotfiles - my dotfiles
elubow/ec2-consistent-snapshot - EC2 Consistent Snapshot with Mongo Support
dalibo/pgshark - Messing with PostgreSQL network traffic to make some usefull things
clkao/AnyMQ - Simple message queue based on AnyEvent
chrisbra/vim_faq - The Vim FAQ from http://vimdoc.sourceforge.net/
PerlDancer/advent-calendar - Articles for the advent calendar
Kimtaro/jisho.org - The source for classic.jisho.org
shoorick/mojowka - Small wiki based on top of Mojolicious::Lite