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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/36456?offset=490</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4210/uni-computing-bergen-norway</guid>
  <pubDate>Tue, 03 Sep 2013 18:40:50 -0500</pubDate>
  <link></link>
  <title><![CDATA[Uni Computing Bergen Norway]]></title>
  <description><![CDATA[
<p>Info on Uni Computing (Webpage: http://www.bccs.uni.no/) :</p>

<p>Uni Computing (formerly Uni BCCS) is a department of Uni Research, affiliated with the University of Bergen.</p>

<p>5 groups in this lab works on computational resources, methods, algorithms, and software.</p>

<p>Following two bioinformatics groups are:</p>

<p>The Computational Biology Unit (CBU) provides education and research in bioinformatics focused on functional genomics.</p>

<p>The Computational Ecology Unit (CEU) is basically deal with population fluctuations, behavioural patterns and the ways life cycles emerge.</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/2728/statistics-of-current-sequencing-and-bioinformatics-market</guid>
	<pubDate>Wed, 21 Aug 2013 08:29:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/2728/statistics-of-current-sequencing-and-bioinformatics-market</link>
	<title><![CDATA[Statistics of current Sequencing and Bioinformatics market]]></title>
	<description><![CDATA[<p>This survey conducted by&nbsp;<strong>Oxford&nbsp;<a href="http://www.ogt.co.uk/" target="_blank">Gene</a>&nbsp;Technology,</strong>&nbsp;<span>provider of innovative&nbsp;genetics&nbsp;research and&nbsp;biomarker</span>&nbsp;<span>solutions to advance molecular medicine, has released the results from a recent survey of researchers using next generation sequencing. (Source:<a href="http://www.news-medical.net/news/20130821/Oxford-Gene-Technology-releases-next-generation-sequencing-survey-results.aspx">http://www.news-medical.net/news/20130821/Oxford-Gene-Technology-releases-next-generation-sequencing-survey-results.aspx</a>&nbsp;)</span></p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="http://www.ogt.com/assets/0000/3190/NGS_Survey_2013_Infographic_Web.pdf" rel="nofollow">http://www.ogt.com/assets/0000/3190/NGS_Survey_2013_Infographic_Web.pdf</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4197/bioinformatics-course-and-lectures</guid>
	<pubDate>Tue, 03 Sep 2013 16:41:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4197/bioinformatics-course-and-lectures</link>
	<title><![CDATA[Bioinformatics course and lectures]]></title>
	<description><![CDATA[<p><a href="http://openwetware.org/wiki/User:Jarle_Pahr/Bioinformatics">http://openwetware.org/wiki/User:Jarle_Pahr/Bioinformatics</a></p><p>Address of the bookmark: <a href="http://gtpb.igc.gulbenkian.pt/bicourses/index.html" rel="nofollow">http://gtpb.igc.gulbenkian.pt/bicourses/index.html</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/4288/new-born-babies-get-ready-to-know-their-whole-genome-soon</guid>
	<pubDate>Thu, 05 Sep 2013 07:24:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4288/new-born-babies-get-ready-to-know-their-whole-genome-soon</link>
	<title><![CDATA[New born babies get ready to know their whole genome soon!!!]]></title>
	<description><![CDATA[<p>USA launch a pilot projects to examine medical information of newborn baby, which are being funded by the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) and the National Human Genome Research Institute (NHGRI), both parts of the National Institutes of Health.</p><p>Awards of $5 million to four grantees have been made in fiscal year 2013 under the Genomic Sequencing and Newborn Screening Disorders research program. The program will be funded at $25 million over five years, as funds are made available.</p><p>"Hundreds of US babies will be pioneers in genomic medicine through a&nbsp;US$25-million programme to sequence their genomes&nbsp;soon after they are born."</p><p><strong>Source</strong>:</p><p><a href="http://blogs.nature.com/news/2013/09/scientists-to-sequence-hundreds-of-newborns-genomes.html">http://blogs.nature.com/news/2013/09/scientists-to-sequence-hundreds-of-newborns-genomes.html</a></p><p><a href="http://www.genome.gov/27554919">http://www.genome.gov/27554919</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/5350/introduction-of-epigenomics</guid>
	<pubDate>Sun, 06 Oct 2013 04:59:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/5350/introduction-of-epigenomics</link>
	<title><![CDATA[Introduction of Epigenomics]]></title>
	<description><![CDATA[<ul>
<li><a href="http://www.genome.gov/27532724#al-1">What is the epigenome?</a></li>
<li><a href="http://www.genome.gov/27532724#al-2">What does the epigenome do?</a></li>
<li><a href="http://www.genome.gov/27532724#al-3">What makes up the epigenome?</a></li>
<li><a href="http://www.genome.gov/27532724#al-4">Is the epigenome inherited?</a></li>
<li><a href="http://www.genome.gov/27532724#al-5">What is imprinting?</a></li>
<li><a href="http://www.genome.gov/27532724#al-6">Can the epigenome change?</a></li>
<li><a href="http://www.genome.gov/27532724#al-7">What makes the epigenome change?</a></li>
<li><a href="http://www.genome.gov/27532724#al-8">How do changes in the epigenome contribute to cancer?</a></li>
<li><a href="http://www.genome.gov/27532724#al-9">How are researchers exploring the epigenome?</a></li>
</ul><p>Address of the bookmark: <a href="http://www.genome.gov/27532724" rel="nofollow">http://www.genome.gov/27532724</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/6302/a-allele-of-slc24a5-gene-is-found-to-be-responsible-for-variation-in-skin-color-of-south-east-asians-and-europeans</guid>
	<pubDate>Tue, 12 Nov 2013 21:02:27 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/6302/a-allele-of-slc24a5-gene-is-found-to-be-responsible-for-variation-in-skin-color-of-south-east-asians-and-europeans</link>
	<title><![CDATA[A-allele of SLC24A5 gene is found to be responsible for variation in skin color of South-East Asians and Europeans]]></title>
	<description><![CDATA[<p><strong>Key finding</strong>:</p><ol>
<li><span>rs1426654 SNP of <em>SLC24A5</em>&nbsp;gene is decider of skin pigmentation variation in South Asia</span></li>
<li><span><span>rs1426654-A allele is widely spread throughout the Indian subcontinent&nbsp;</span></span></li>
<li><span>Skin pigmentation is also account by the combination of processes like selection and demographic history of populations affected by their language and origin</span></li>
<li><span><span>Sign of positive selection in Europeans, Middle East, Pakistan, Central Asia and North India but not in South India</span></span></li>
<li><span><span>In European , A-allele is almost reached to fixation</span></span></li>
</ol><p><span><span><strong>Paper</strong>:</span></span></p><p><span><span><a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003912">http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003912</a></span></span></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/10379/your-stressdepression-came-from-ancestor</guid>
	<pubDate>Sun, 04 May 2014 18:46:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/10379/your-stressdepression-came-from-ancestor</link>
	<title><![CDATA[Your stress/depression came from ancestor]]></title>
	<description><![CDATA[<p>"A study published in&nbsp;<em>Nature Neuroscience</em>&nbsp;finds that stress in early life alters the production of small RNAs, called microRNAs, in the sperm of mice. The mice show depressive behaviours that persist in their progeny."</p><p>Source:</p><p>http://www.nature.com/news/sperm-rna-carries-marks-of-trauma-1.15049</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33826/geneprof-analysis-of-high-throughput-sequencing-experiment</guid>
	<pubDate>Wed, 05 Jul 2017 16:47:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33826/geneprof-analysis-of-high-throughput-sequencing-experiment</link>
	<title><![CDATA[GeneProf: analysis of high-throughput sequencing experiment]]></title>
	<description><![CDATA[<div>GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data!</div>
<p>Some of GeneProf's highlights include:</p>
<ul>
<li><strong>Easy-to-use web-based interface:</strong>Access your data at any time from any computer with a working internet connection -- no need to install software! (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_introduction.jsp#section:SystemRequirements">Section 'System Requirements'</a>).</li>
<li><strong>Analysis wizards make your life easy:</strong>Step-by-step workflows make it easy to analyse high-throughput data within a minimum of hands-on time. (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_conceptsexplained.jsp#subconcept:AnalysisWizards">SubConcept 'Analysis Wizards'</a>).</li>
<li><strong>Versatile modules:</strong>Advanced users and data analysis experts benefit from GeneProf's broad range of analysis modules, which can be combined freely into sophisticated workflows (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_conceptsexplained.jsp#concept:Workflows">Concept 'Workflows'</a>).</li>
<li><strong>Integrated Analysis:</strong>Analysis of&nbsp;<em>ChIP-seq</em>&nbsp;and&nbsp;<em>RNA-seq</em>&nbsp;data in one place, plus support for the integration of other external data (e.g. from microarrays).</li>
<li><strong>Comprehensive Resource:</strong>GeneProf provides a comprehensive resource of&nbsp;<em>fully analyzed</em>&nbsp;next-generation sequencing data. Experimental results can be easily accessed and compared and the analysis procedures employed to produce the data are fully transparent (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_tutorials.jsp#tutorial:ExaminingPublicNext-GenDatausingGeneProf">Tutorial 'Examining Public Next-Gen Data..'</a>).</li>
<li><strong>Extensibility:</strong>Algorithm developers and computer programmers can develop their own modules and extend GeneProf. Existing software can be easily wrapped in the workflow framework (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_advancedtopics.jsp#section:ModuleDevelopment:AddingnewFunctionalitytoGeneProf">Section 'Module Development: Adding new..'</a>) and data from GeneProf may be used externally (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_advancedtopics.jsp#section:WebAPI:RetrievingDatafromGeneProf">Section 'Web API: Retrieving Data from ..'</a>).</li>
</ul>
<p>&nbsp;</p>
<p>GeneProf is academic software developed at the&nbsp;<a href="http://www.crm.ed.ac.uk/">Centre for Regenerative Medicine</a>&nbsp;/&nbsp;<a href="http://www.crm.ed.ac.uk/about/institute-stem-cell-research">Institute for Stem Cell Research</a>,&nbsp;<a href="http://www.ed.ac.uk/">University of Edinburgh</a>&nbsp;and has benefited from funding by the&nbsp;<a href="http://www.mrc.ac.uk/">Medical Research Council</a>&nbsp;and the&nbsp;<a href="http://www.eurosystemproject.eu/">EU Framework 7 Project "EuroSyStem"</a>.</p><p>Address of the bookmark: <a href="https://www.geneprof.org/GeneProf/index.jsp" rel="nofollow">https://www.geneprof.org/GeneProf/index.jsp</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/34711/1mb-long-dna-with-nanopore-technology</guid>
	<pubDate>Tue, 19 Dec 2017 18:49:28 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/34711/1mb-long-dna-with-nanopore-technology</link>
	<title><![CDATA[1mb long DNA with Nanopore technology]]></title>
	<description><![CDATA[<p>The first continuous DNA read of more than a million bases (&gt;1Mb) has been achieved, using Oxford Nanopore sequencing technology. Congratulations to Martin Smith and collaborators! Read more: http://bit.ly/2j5TNCO</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36806/manta-rapid-detection-of-structural-variants-and-indels-for-germline-and-cancer-sequencing-applications</guid>
	<pubDate>Mon, 28 May 2018 09:41:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36806/manta-rapid-detection-of-structural-variants-and-indels-for-germline-and-cancer-sequencing-applications</link>
	<title><![CDATA[Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications.]]></title>
	<description><![CDATA[Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels and large insertions within a single efficient workflow.<p>Address of the bookmark: <a href="https://github.com/Illumina/manta" rel="nofollow">https://github.com/Illumina/manta</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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