<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/36890?offset=460 https://bioinformaticsonline.com/bookmarks/view/26303/maker Sun, 07 Feb 2016 15:59:24 -0600 https://bioinformaticsonline.com/bookmarks/view/26303/maker <![CDATA[MAKER]]> MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and proteins to a genome, produces ab-initio gene predictions and automatically synthesizes these data into gene annotations having evidence-based quality values.

More at http://www.yandell-lab.org/software/maker.html

Address of the bookmark: http://www.yandell-lab.org/software/maker.html

]]> Jitendra Narayan https://bioinformaticsonline.com/bookmarks/view/26414/advanced-bash-scripting-guide Thu, 18 Feb 2016 04:50:51 -0600 https://bioinformaticsonline.com/bookmarks/view/26414/advanced-bash-scripting-guide <![CDATA[Advanced Bash-Scripting Guide]]> This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly toward an intermediate/advanced level of instruction . . . all the while sneaking in little nuggets of UNIX® wisdom and lore. It serves as a textbook, a manual for self-study, and as a reference and source of knowledge on shell scripting techniques. The exercises and heavily-commented examples invite active reader participation, under the premise that the only way to really learn scripting is to write scripts.

This book is suitable for classroom use as a general introduction to programming concepts.

More at http://tldp.org/LDP/abs/html/

Address of the bookmark: http://tldp.org/LDP/abs/html/

]]> Jit https://bioinformaticsonline.com/bookmarks/view/29343/accnet Fri, 07 Oct 2016 05:22:11 -0500 https://bioinformaticsonline.com/bookmarks/view/29343/accnet <![CDATA[AccNET]]> AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET collects phylogenetic and functional information in a network improving the analysis capability. Networks offer a new perspective of organism organization through elements acquired by horizontal gene transfers and not constricted by hierarchical structures.

More at https://www.youtube.com/watch?v=vdGuy1GAJrQ

Address of the bookmark: https://sourceforge.net/projects/accnet/

]]> Jitendra Narayan