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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/36895?offset=90</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/5388/biggest-human-brain-project-hbp-launched</guid>
	<pubDate>Mon, 07 Oct 2013 19:50:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/5388/biggest-human-brain-project-hbp-launched</link>
	<title><![CDATA[Biggest Human Brain Project (HBP) launched!!!]]></title>
	<description><![CDATA[<p><img src="http://s1.ibtimes.com/sites/www.ibtimes.com/files/styles/v2_article_large/public/2013/10/07/human-brain-project.jpg" width="500" height="500" alt="image" style="border: 0px;"></p><p>"In neuroscience, the project will use neuroinformatics and brain simulation to collect and integrate experimental data, identifying and filling gaps in our knowledge, and prioritising future experiments.</p><p>In medicine, the HBP will use medical informatics to identify biological signatures of brain disease, allowing diagnosis at an early stage, before the disease has done irreversible damage, and enabling personalized treatment, adapted to the needs of individual patients. Better diagnosis, combined with disease and drug simulation, will accelerate the discovery of new treatments, drastically lowering the cost of drug discovery.<br /><br />In computing, new techniques of interactive supercomputing, driven by the needs of brain simulation, will impact a vast range of industries. Devices and systems, modelled after the brain, will overcome fundamental limits on the energy-efficiency, reliability and programmability of current technologies, clearing the road for systems with brain-like intelligence."</p><p>Source:&nbsp;<a href="http://www.forbes.com/sites/jenniferhicks/2013/10/07/the-human-brain-project-begins/">http://www.forbes.com/sites/jenniferhicks/2013/10/07/the-human-brain-project-begins/</a>&nbsp;</p><p>(<a href="https://www.facebook.com/humanbrainproj/info">https://www.facebook.com/humanbrainproj/info</a>)</p><p>Home Page:</p><p><a href="https://www.humanbrainproject.eu/">https://www.humanbrainproject.eu/</a></p><p>Jobs:</p><p><a href="https://www.humanbrainproject.eu/participate/jobs">https://www.humanbrainproject.eu/participate/jobs</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/9586/list-of-bioinformatics-companies-and-genomics-service-providers</guid>
	<pubDate>Wed, 02 Apr 2014 06:52:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/9586/list-of-bioinformatics-companies-and-genomics-service-providers</link>
	<title><![CDATA[List of bioinformatics companies and genomics service providers]]></title>
	<description><![CDATA[<p>Plz check out link for bioinformatics and genomics companies.&nbsp;</p><p>Address of the bookmark: <a href="http://grouthbio.com/Genome_Software_Service.php" rel="nofollow">http://grouthbio.com/Genome_Software_Service.php</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/11107/the-minerva-research-group-for-bioinformatics</guid>
  <pubDate>Tue, 27 May 2014 15:48:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Minerva Research Group for Bioinformatics]]></title>
  <description><![CDATA[
<p>The focus of the bioinformatics group is to use computational approaches to gain an insight into genome evolution in primates.</p>

<p>http://www.eva.mpg.de/genetics/bioinformatics/overview.html?Fsize=0%2C%20%40%2F%27</p>

<p>Kelso Group<br />Department of Evolutionary Genetics<br />Max Planck Institute for Evolutionary Anthropology<br />Deutscher Platz 6<br />04103 Leipzig<br />Germany<br />Phone: +49 341 3550 500</p>

<p>Job: <br />http://www.eva.mpg.de/genetics/bioinformatics/jobs.html?Fsize=0%2C%2B%40</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33976/goldgenomes-online-database</guid>
	<pubDate>Wed, 26 Jul 2017 07:49:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33976/goldgenomes-online-database</link>
	<title><![CDATA[GOLD:Genomes Online Database]]></title>
	<description><![CDATA[<p><span>GOLD</span><span>:Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world.</span></p>
<p>https://gold.jgi.doe.gov/</p><p>Address of the bookmark: <a href="https://gold.jgi.doe.gov/" rel="nofollow">https://gold.jgi.doe.gov/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34914/ra-assembler-a-de-novo-dna-assembler-for-third-generation-sequencing-data</guid>
	<pubDate>Wed, 27 Dec 2017 20:36:54 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34914/ra-assembler-a-de-novo-dna-assembler-for-third-generation-sequencing-data</link>
	<title><![CDATA[Ra assembler - a de novo DNA assembler for third generation sequencing data]]></title>
	<description><![CDATA[<p>Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute of Singapore (GIS).</p>
<p>Ra is in development since 2014 in the form of several separate components that used to be run individually.<br>This project aims to ease the usage of Ra by integrating it into a complete de novo assembly tool.</p>
<p>Unlike other state-of-the-art assemblers,&nbsp;<span>Ra does not have an error correction step.</span>&nbsp;Instead, it relies on detecting overlaps using a very sensitive and specific overlapper ("graphmap -w owler",&nbsp;<a href="https://github.com/isovic/graphmap">https://github.com/isovic/graphmap</a>) and constructing and reducing an overlap graph (Ra layout,&nbsp;<a href="https://github.com/mariokostelac/ra">https://github.com/mariokostelac/ra</a>).</p><p>Address of the bookmark: <a href="https://github.com/mariokostelac/ra-integrate/" rel="nofollow">https://github.com/mariokostelac/ra-integrate/</a></p>]]></description>
	<dc:creator>biogeek</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36806/manta-rapid-detection-of-structural-variants-and-indels-for-germline-and-cancer-sequencing-applications</guid>
	<pubDate>Mon, 28 May 2018 09:41:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36806/manta-rapid-detection-of-structural-variants-and-indels-for-germline-and-cancer-sequencing-applications</link>
	<title><![CDATA[Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications.]]></title>
	<description><![CDATA[Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels and large insertions within a single efficient workflow.<p>Address of the bookmark: <a href="https://github.com/Illumina/manta" rel="nofollow">https://github.com/Illumina/manta</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37498/nextsv-a-meta-caller-for-structural-variants-from-low-coverage-long-read-sequencing-data</guid>
	<pubDate>Mon, 06 Aug 2018 17:24:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37498/nextsv-a-meta-caller-for-structural-variants-from-low-coverage-long-read-sequencing-data</link>
	<title><![CDATA[NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data]]></title>
	<description><![CDATA[<p>NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV callers and generates two integrated call sets (sensitive/stringent) for different analysis purpose. The output of NextSV is in ANNOVAR-compatible bed format. Users can easily perform downstream annotation using ANNOVAR and disease gene discovery using Phenolyzer.</p>
<p>&nbsp;</p>
<h2>&nbsp;</h2><p>Address of the bookmark: <a href="https://github.com/Nextomics/NextSV" rel="nofollow">https://github.com/Nextomics/NextSV</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37749/d2tools-the-toolbox-for-counting-the-frequency-of-k-tuple-from-sequencing-datasets-and-calculate-the-dissimilarity</guid>
	<pubDate>Thu, 20 Sep 2018 08:38:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37749/d2tools-the-toolbox-for-counting-the-frequency-of-k-tuple-from-sequencing-datasets-and-calculate-the-dissimilarity</link>
	<title><![CDATA[d2Tools: The toolbox for counting the frequency of k-tuple from sequencing datasets and calculate the dissimilarity]]></title>
	<description><![CDATA[<p><code>d2Tools</code>&nbsp;are the toolbox for counting the frequency of K-tuple from sequencing datasets and then calculating the pairwise dissimilarity matrix between samples with the&nbsp;<strong>d2-style</strong>(d2/d2<code>*</code>/d2S representing d2/d2Star/d2shepp, respectively) measures. Hao, Dai, Eucliean, Mahattan, and Chebyshev distance measures are also included in d2Tools.</p>
<p>Manual at&nbsp;https://code.google.com/archive/p/d2-tools/wikis/d2ToolMannual.wiki</p><p>Address of the bookmark: <a href="https://code.google.com/archive/p/d2-tools/" rel="nofollow">https://code.google.com/archive/p/d2-tools/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38205/sim3c-read-pair-simulation-of-3c-based-sequencing-methodologies-hic-meta3c-dnase-hic</guid>
	<pubDate>Tue, 13 Nov 2018 07:25:38 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38205/sim3c-read-pair-simulation-of-3c-based-sequencing-methodologies-hic-meta3c-dnase-hic</link>
	<title><![CDATA[sim3C: Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)]]></title>
	<description><![CDATA[<p><strong>Required python modules</strong></p>
<ul>
<li>biopython</li>
<li>intervaltree</li>
<li>numpy</li>
<li>scipy</li>
<li>tqdm</li>
<li>PyYAML</li>
</ul><p>Address of the bookmark: <a href="https://github.com/cerebis/sim3C" rel="nofollow">https://github.com/cerebis/sim3C</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/38649/ngs-platforms-launched-by-bgi%E2%80%99s-mgi-tech</guid>
	<pubDate>Thu, 10 Jan 2019 04:42:06 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/38649/ngs-platforms-launched-by-bgi%E2%80%99s-mgi-tech</link>
	<title><![CDATA[NGS Platforms launched by BGI’s MGI Tech]]></title>
	<description><![CDATA[<p>MGI Tech Co., Ltd. (MGI), a subsidiary of BGI Group, is committed to enabling effective and affordable healthcare solutions for all. Based on its proprietary technology, MGI produces sequencing devices, equipment, consumables and reagents to support life science research, medicine and healthcare. MGI's multi-omics platforms include genetic sequencing, mass spectrometry and medical imaging. Providing real-time, comprehensive, life-long solutions, its mission&nbsp;is to&nbsp;develop and promote advanced life science tools for future healthcare.</p><p>MGI, a subsidiary of global genomics leader BGI Group, announced pricing and its first early access customer for the new ultra high-throughput sequencer, MGISEQ-T7, saying it has driven down sequencing cost to&nbsp;$5&nbsp;per gigabyte, with exceptionally high accuracy. Such innovations are helping more people to realize the benefits of genomic information.</p><p>In October, MGI launched the MGISEQ-T7, a highly flexible production-scale platform that is the most powerful sequencer to date. It can produce as many as 60 whole human genomes in one day. The instrument sells for&nbsp;$1 million.</p><p>The T7 enables simultaneous but independent operation of up to four flow cells, which means different applications such as single-cell RNA sequencing, whole exome sequencing and whole genome sequencing can be run in different flow cells at the same time. This helps to reduce costs, allowing MGI to offer the most competitive sequencing price in the market.</p><p><span>Powered by DNBseq&trade;, MGISEQ delivers quality data with accuracy for SNP and Indel calling rate of 99.9% and 99%, respectively, along with decreased duplication rate down to less than 2 percent, and almost zero Index mis-assignment rate.</span></p><p><span><span>SOURCE MGI</span></span></p><p>https://www.bgi.com/global/company/news/bgis-mgi-tech-launches-two-new-ngs-platforms/</p><p>http://en.mgitech.cn/</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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