<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/36905?offset=370 https://bioinformaticsonline.com/bookmarks/view/43614/mitoz-a-toolkit-for-animal-mitochondrial-genome-assembly-annotation-and-visualization Tue, 30 Nov 2021 23:23:57 -0600 https://bioinformaticsonline.com/bookmarks/view/43614/mitoz-a-toolkit-for-animal-mitochondrial-genome-assembly-annotation-and-visualization <![CDATA[MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization]]> MitoZ, consisting of independent modules of de novo assembly, findMitoScaf (find Mitochondrial Scaffolds), annotation and visualization, that can generate mitogenome assembly together with annotation and visualization results from HTS raw reads.

https://academic.oup.com/nar/article/47/11/e63/5377471

Address of the bookmark: https://github.com/linzhi2013/MitoZ

]]> Neel https://bioinformaticsonline.com/bookmarks/view/44630/genofig-a-user-friendly-application-for-the-visualization-and-comparison-of-genomic-regions Mon, 05 Aug 2024 23:06:58 -0500 https://bioinformaticsonline.com/bookmarks/view/44630/genofig-a-user-friendly-application-for-the-visualization-and-comparison-of-genomic-regions <![CDATA[GenoFig: a user-friendly application for the visualization and comparison of genomic regions]]> Tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It is an independent recoding of Easyfig 2 initially developped by at the S. Beatson Lab [https://mjsull.github.io/Easyfig/]

Download the GenoFig source code using the 'Download' button on top of this page. Cloning is currently not available for people not member of the INRAE French Institution. After decompression, open a terminal in the folder containing the decompressed files and run:

conda env create -f extras/requirements.yml
extras/SETUP.sh

Address of the bookmark: https://forgemia.inra.fr/public-pgba/genofig

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