Rahul Nayak
A Bioinformatician
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GIGGLE: a search engine for large-scale integrated genome analysis
By Jit 2509 days agogithub.com - GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interval files. GIGGLE (https://github.com/ryanlayer/giggle) scales to billions of intervals and is...Mesquite: A modular system for evolutionary analysis
By Rahul Nayak 2447 days agomesquiteproject.org - Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics,...snakepipes: A toolkit based on snakemake and python for analysis of NGS data
By Jit 2004 days agogithub.com - snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-C Whole Genome Bisulfite Seq/WGBS (*Also available in...Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
By BioStar 1689 days agogithub.com - Dahak is a software suite that integrates state-of-the-art open source tools for metagenomic analyses. Tools in the dahak software suite will perform various steps in metagenomic analysis workflows including data pre-processing, metagenome assembly,...DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
By Neel 1458 days agohttp://www.ub.edu/dnasp/ - DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms using data from a single locus (a multiple sequence aligned -MSA data), or from several loci (a Multiple-MSA data, such as formats generated by some...GenomeTools: The versatile open source genome analysis software
By Neel 1025 days agohttp://genometools.org/ - The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named...Calculate the significance of the difference between two trends
By BioStar 620 days ago Comments (1)To calculate the significance of the difference between two trends, you can use a statistical test such as a t-test or ANOVA (analysis of variance).PhD opportunity at Université de Liège - Belgium
PhD opportunity at Université de Liège - Belgium The Bioinformatics and Systems Biology Unit of Université de Liège (Belgium) is looking for a highly motivated master student with programming skills for a PhD thesis project (4 years, fully...Nigerian Bioinformatics and Genomics Network (NBGN)
This is to announce the second official conference of the Nigerian Bioinformatics and Genomics Network (NBGN). October 11-13,2021 at Landmark University, Omu-Aran, Kwara State and Zoom ( conference link to be announced...Useful links to therapy, disease, drug and drug-target network data:
By Jit 1636 days agoUseful resources to therapy, disease, drug and drug-target network data
