<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/37233?offset=450 https://bioinformaticsonline.com/researchlabs/view/26499/katju-lab Fri, 26 Feb 2016 03:25:32 -0600 <![CDATA[Katju Lab]]> TheLab seek to understand the genetic factors contributing to genomic variation and phenotypic diversity. To this end, we employ molecular and bioinformatic tools to study evolutionary processes at the level of populations, both experimental and natural, and genomes. Our research interests encompass a wide range of topics, including the evolution of organellar and nuclear genomes, gene duplication and the origin of novel function, and the fitness and phenotypic consequences of mutation in evolution. For details regards ongoing projects, please see the Research page.

http://katjulab.com/research.html

]]> https://bioinformaticsonline.com/bookmarks/view/26306/busco Sun, 07 Feb 2016 16:02:39 -0600 https://bioinformaticsonline.com/bookmarks/view/26306/busco <![CDATA[BUSCO]]> Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

More at http://busco.ezlab.org/

Address of the bookmark: http://busco.ezlab.org/

]]> Jitendra Narayan https://bioinformaticsonline.com/bookmarks/view/26325/crossmap Mon, 08 Feb 2016 15:47:00 -0600 https://bioinformaticsonline.com/bookmarks/view/26325/crossmap <![CDATA[CrossMap]]> CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)).

It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.

CrossMap is designed to liftover genome coordinates between assemblies. It’s not a program for aligning sequences to reference genome.

We do not recommend using CrossMap to convert genome coordinates between species.

More at http://crossmap.sourceforge.net/

Address of the bookmark: http://crossmap.sourceforge.net/

]]> Jitendra Narayan