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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/37636?offset=390</link>
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	<description><![CDATA[]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44930/bioinformatics-the-bridge-between-curiosity-and-discovery</guid>
	<pubDate>Mon, 24 Nov 2025 05:16:49 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44930/bioinformatics-the-bridge-between-curiosity-and-discovery</link>
	<title><![CDATA[Bioinformatics: The Bridge Between Curiosity and Discovery]]></title>
	<description><![CDATA[<p>In the sprawling universe of modern science, bioinformatics stands as one of the most transformative and empowering fields of our time. It is where biology meets computation, where data becomes meaning, and where curiosity becomes discovery. If you&rsquo;ve stepped into this world&mdash;or are considering it&mdash;here&rsquo;s your reminder: you&rsquo;re part of a revolution.</p><p><strong>Why Bioinformatics Matters More Than Ever</strong></p><p>Every day, our world generates massive amounts of biological data&mdash;from genome sequences to microbiome profiles to real-time pathogen surveillance. Hidden within these datasets are the answers to some of the greatest challenges humanity faces: emerging diseases, antimicrobial resistance, environmental stress, genetic disorders, sustainable agriculture, and more.</p><p>Bioinformatics isn&rsquo;t just a skill.<br />It&rsquo;s the language of the future of biology.</p><p>By mastering it, you give yourself the power to:</p><p>Decode genomes and understand life at its most fundamental level</p><p>Identify patterns no microscope could ever reveal</p><p>Predict disease outbreaks before they occur</p><p>Accelerate drug discovery with computational precision</p><p>Contribute to open-source tools that empower scientists worldwide</p><p>You don&rsquo;t just follow science&mdash;you drive it.</p><p><strong>Every Expert Was Once a Beginner</strong></p><p>Many newcomers feel intimidated. Command-line interfaces. R scripts. Python packages. Next-generation sequencing data. Complex machine learning models.</p><p>But here&rsquo;s the truth: every bioinformatician started exactly where you are now&mdash;curious, unsure, but excited.</p><p>No one writes perfect code on day one.</p><p>No one understands genomics pipelines immediately.</p><p>What makes you a bioinformatician is not perfection, but perseverance.</p><p>When your script throws a cryptic error&hellip;<br />When your data refuses to format&hellip;<br />When your pipeline runs for 6 hours only to crash&hellip;</p><p>Remember: this is part of the journey.<br />Every error teaches you. Every retry strengthens you. Every breakthrough energizes you.</p><p>Bioinformatics Is Not Just a Career&mdash;It&rsquo;s a Mindset</p><p>It&rsquo;s the mindset of:</p><p>Problem-solving.</p><p>Continuous learning.</p><p>Turning chaos into clarity.</p><p>Seeing what others can&rsquo;t.</p><p>Bioinformaticians are detectives of biological complexity. You sit at the intersection of innovation, using tools that can shape public health, medicine, agriculture, and ecology. Few fields give you such direct impact on the world.</p><p><strong>Your Contribution Matters</strong></p><p>As you work on your script, pipeline, genome, or model, remember:</p><p>Somewhere, your analysis might contribute to:</p><p>A new therapy</p><p>A faster diagnostic test</p><p>A better understanding of a pathogen</p><p>A more resilient crop</p><p>An open-source dataset that helps thousands</p><p>A discovery that rewrites textbooks</p><p>Your code may be small, but its ripple effect is powerful.</p><p>The Future Is Bioinformatics&mdash;And You Are Part of It</p><p>The world is shifting. Wet labs are integrating AI. Hospitals rely on genomic insights. Farmers use gene-level predictions. Governments monitor disease in real time. Students launch pipelines that become global tools.</p><p>This is a golden era&mdash;and you are not late.<br />You are exactly where you need to be.</p><p>Keep Pushing. Keep Learning. Keep Discovering.</p><p>Bioinformatics is a journey filled with challenges, but also with unmatched rewards.</p><p>So the next time you feel stuck, frustrated, or overwhelmed, remember:<br />You&rsquo;re building the science of tomorrow.</p><p>Be proud. Stay curious. Keep going.<br />Your work matters more than you think.</p>]]></description>
	<dc:creator>BioStar</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40948/bio7-an-integrated-development-environment-for-ecological-modeling-scientific-image-analysis-and-statistical-analysis</guid>
	<pubDate>Fri, 07 Feb 2020 23:32:24 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40948/bio7-an-integrated-development-environment-for-ecological-modeling-scientific-image-analysis-and-statistical-analysis</link>
	<title><![CDATA[Bio7: an integrated development environment for ecological modeling, scientific image analysis and statistical analysis]]></title>
	<description><![CDATA[<p><span>The application Bio7 is an integrated development environment for ecological modeling, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of its plug-in structure and the possibility of customization.</span></p>
<p><a href="https://bio7.org/about/">https://bio7.org/about/</a></p><p>Address of the bookmark: <a href="https://bio7.org/home-2/" rel="nofollow">https://bio7.org/home-2/</a></p>]]></description>
	<dc:creator>Nidhi Rajput</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/861/fiona-brinkman-laboratory</guid>
  <pubDate>Sun, 14 Jul 2013 12:46:31 -0500</pubDate>
  <link></link>
  <title><![CDATA[Fiona Brinkman Laboratory]]></title>
  <description><![CDATA[
<p>Infectious disease control needs to be made more “sustainable”. We need to reduce selective pressure on pathogens to evolve antibiotic resistance. We need to control infectious disease outbreaks and associated immune disorders with a better understanding of the genetic,  environmental and social factors that impact disease spread and severity.</p>

<p>Research Area</p>

<p>Investigating the role in disease of both the microbe and its host (i.e immune system failure), using genomics and systems biology-based approaches<br />Using genomics and network analysis to characterize disease outbreaks and their environmental/social/genetic causes, and<br />Identifying new anti-infective and immune modulating therapies/biomarkers.</p>

<p>Link @ http://www.brinkman.mbb.sfu.ca/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/923/phylogenetic-for-bioinformatics</guid>
	<pubDate>Tue, 16 Jul 2013 03:50:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/923/phylogenetic-for-bioinformatics</link>
	<title><![CDATA[Phylogenetic for Bioinformatics]]></title>
	<description><![CDATA[<p>Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence from morphological, biochemical, and gene sequence data suggests that all organisms on Earth are genetically related, and the genealogical relationships of living things can be represented by a vast evolutionary tree, the Tree of Life. The Tree of Life then represents the phylogeny of organisms, i. e., the history of organismal lineages as they change through time.<br />Every living organism contains DNA, RNA, and proteins. Closely related organisms generally have a high degree of agreement in the molecular structure of these substances, while the molecules of organisms distantly related usually show a pattern of dissimilarity. Molecular phylogeny uses such data to build a "relationship tree" that shows the probable evolution of various organisms. Not until recent decades, however, has it been possible to isolate and identify these molecular structures.&nbsp;<br />phylogenetics is the study of evolutionary relatedness among various groups of organisms (for example, species or populations), which is discovered through molecular sequencing data and morphological data matrices. In other word, Phylogenetics, the science of phylogeny, is one part of the larger field of systematics, which also includes taxonomy. Taxonomy is the science of naming and classifying the diversity of organisms Molecular phylogeny is the use of the structure of molecules to gain information on an organism's evolutionary relationships. The result of a molecular phylogenetic analysis is expressed in a so-called phylogenetic tree.</p><p>The evolutionary connections between organisms are represented graphically through phylogenetic trees. Due to the fact that evolution takes place over long periods of time that cannot be observed directly, biologists must reconstruct phylogenies by inferring the evolutionary relationships among present-day organisms.&nbsp;<br />Application of the techniques that make this possible can be seen in the very limited field of human genetics, such as the ever more popular use of genetic testing to determine a child's paternity, as well as the emergence of a new branch of criminal forensics focused on genetic evidence.<br />The effect on traditional scientific classification schemes in the biological sciences has been dramatic as well. Work that was once immensely labor- and materials-intensive can now be done quickly and easily, leading to yet another source of information becoming available for systematic and taxonomic appraisal. This particular kind of data has become so popular that taxonomical schemes based solely on molecular data may be encountered. Proponents even claim that taxonomy was previously based on morphology alone, which of course is utter fable.<br /><br /><strong>For additional information on phylogenetics, see list of Phylogenetics Resources on the Internet.</strong></p><p>Phylogeny and Reconstructing Phylogenetic Trees:&nbsp;<a href="http://aleph0.clarku.edu/~djoyce/java/Phyltree/cover.html"></a><a href="http://aleph0.clarku.edu/~djoyce/java/Phyltree/cover.html">http://aleph0.clarku.edu/~djoyce/java/Phyltree/cover.html</a><br />the CBRG and Department of Statistics Phylogeny tutorial:&nbsp;<a href="http://www.compbio.ox.ac.uk/tutorials/phylogeny/"></a><a href="http://www.compbio.ox.ac.uk/tutorials/phylogeny/">http://www.compbio.ox.ac.uk/tutorials/phylogeny/</a><br />TUTORIAL: PHYLOGENETIC ANALYSIS USING PARSIMONY:<a href="http://home.cc.umanitoba.ca/~psgendb/GDE/phylogeny/parsimony/phylip.parsimony.html"></a><a href="http://home.cc.umanitoba.ca/~psgendb/GDE/phylogeny/parsimony/phylip.parsimony.html">http://home.cc.umanitoba.ca/~psgendb/GDE/phylogeny/parsimony/phylip.parsimony.html</a></p><p>PHYLIP:&nbsp;<a href="http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/main.html"></a><a href="http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/main.html">http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/main.html</a><br />An Introduction to Molecular Phylogeny:&nbsp;<a href="http://bibiserv.techfak.uni-bielefeld.de/gcb04/tutorials/hoef-emden/GCB04Tut.pdf"></a><a href="http://bibiserv.techfak.uni-bielefeld.de/gcb04/tutorials/hoef-emden/GCB04Tut.pdf">http://bibiserv.techfak.uni-bielefeld.de/gcb04/tutorials/hoef-emden/GCB04Tut.pdf</a></p><p>How to make a phylogenetic tree:&nbsp;<a href="http://www.hiv.lanl.gov/content/sequence/TUTORIALS/TREE_TUTORIAL/Tree"></a><a href="http://www.hiv.lanl.gov/content/sequence/TUTORIALS/TREE_TUTORIAL/Tree">http://www.hiv.lanl.gov/content/sequence/TUTORIALS/TREE_TUTORIAL/Tree</a>tutorial.html<br />Phylogenetic Trees:&nbsp;<a href="http://cnx.org/content/m11052/latest/"></a><a href="http://cnx.org/content/m11052/latest/">http://cnx.org/content/m11052/latest/</a><br />Phylogeny by Ron Shamir:&nbsp;<a href="http://www.cs.tau.ac.il/~rshamir/algmb/01/scribe08/lec08.pdf"></a><a href="http://www.cs.tau.ac.il/~rshamir/algmb/01/scribe08/lec08.pdf">http://www.cs.tau.ac.il/~rshamir/algmb/01/scribe08/lec08.pdf</a><br />Introduction to Phylogeny:&nbsp;<a href="http://www.utm.edu/departments/cens/biology/rirwin/391/391Phylog.htm"></a><a href="http://www.utm.edu/departments/cens/biology/rirwin/391/391Phylog.htm">http://www.utm.edu/departments/cens/biology/rirwin/391/391Phylog.htm</a><br />Lecturer notes on Phylogeny:&nbsp;<a href="http://www.sbc.su.se/~bens/course_material/phylocourse1/lecture2.pdf"></a><a href="http://www.sbc.su.se/~bens/course_material/phylocourse1/lecture2.pdf">http://www.sbc.su.se/~bens/course_material/phylocourse1/lecture2.pdf</a><br />Principles and Practice of Phylogenetic Systematics:<a href="http://www.faculty.biol.ttu.edu/Strauss/Phylogenetics/LectureNotes.htm"></a><a href="http://www.faculty.biol.ttu.edu/Strauss/Phylogenetics/LectureNotes.htm">http://www.faculty.biol.ttu.edu/Strauss/Phylogenetics/LectureNotes.htm</a></p><p>Inferring phylogenetic trees:&nbsp;<a href="http://www.cis.hut.fi/Opinnot/T-61.6070/slides2008/pres_6070.pdf"></a><a href="http://www.cis.hut.fi/Opinnot/T-61.6070/slides2008/pres_6070.pdf">http://www.cis.hut.fi/Opinnot/T-61.6070/slides2008/pres_6070.pdf</a></p><p><strong>Lecture Notes</strong></p><p>Chapter 1 - The Diversity, Classification, and Evolution of Vertebrates:<a href="http://academic.emporia.edu/mooredwi/nathist/chap1.htm"></a><a href="http://academic.emporia.edu/mooredwi/nathist/chap1.htm">http://academic.emporia.edu/mooredwi/nathist/chap1.htm</a></p><p>Algorithms for Phylogenetic Reconstructions:<a href="http://lectures.molgen.mpg.de/Algorithmische_Bioinformatik_WS0405/phylogeny_script.pdf"></a><a href="http://lectures.molgen.mpg.de/Algorithmische_Bioinformatik_WS0405/phylogeny_script.pdf">http://lectures.molgen.mpg.de/Algorithmische_Bioinformatik_WS0405/phylogeny_script.pdf</a></p><p>Phylogeny.fr is a free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences. Phylogeny.fr runs and connects various bioinformatics programs to reconstruct a robust phylogenetic tree from a set of sequences. For more detail :&nbsp;<a href="http://www.phylogeny.fr/version2_cgi/index.cgi"></a><a href="http://www.phylogeny.fr/version2_cgi/index.cgi">http://www.phylogeny.fr/version2_cgi/index.cgi</a></p><p>A Brief Tutorial on Phylogenetics<br /><a href="http://bioss.ac.uk/~dirk/talks/tutorial_phylogenetics.pdf"></a><a href="http://bioss.ac.uk/~dirk/talks/tutorial_phylogenetics.pdf">http://bioss.ac.uk/~dirk/talks/tutorial_phylogenetics.pdf</a></p><p>A Brief Tutorial on Phylogenetics Human Rabbit Chicken<br /><a href="http://bioss.ac.uk/~dirk/talks/psnup_tutorial_phylogenetics.pdf"></a><a href="http://bioss.ac.uk/~dirk/talks/psnup_tutorial_phylogenetics.pdf">http://bioss.ac.uk/~dirk/talks/psnup_tutorial_phylogenetics.pdf</a></p><p>Phylogenetic Tree Computation Tutorial Overview<br /><a href="http://pga.lbl.gov/Workshop/April2002/lectures/Olken.pdf"></a><a href="http://pga.lbl.gov/Workshop/April2002/lectures/Olken.pdf">http://pga.lbl.gov/Workshop/April2002/lectures/Olken.pdf</a></p><p>MrBayes: A program for the Bayesian inference of phylogeny<br /><a href="http://golab.unl.edu/teaching/SBseminar/manual.pdf"></a><a href="http://golab.unl.edu/teaching/SBseminar/manual.pdf">http://golab.unl.edu/teaching/SBseminar/manual.pdf</a></p><p><strong>Web sites providing software for the construction of phylogenetic trees</strong></p><ul>
<li><a href="http://www.mbio.ncsu.edu/BioEdit/bioedit.html">BioEdit</a></li>
</ul><ul>
<li><a href="http://www.dinofish.com/">Coelocanth-Fish Out of Time</a></li>
</ul><ul>
<li><a href="http://cbrg.inf.ethz.ch/">Computational Biochemistry Research Group</a></li>
</ul><ul>
<li><a href="http://www.geocities.com/RainForest/Vines/8695/software.html">Digital Taxonomy</a></li>
</ul><ul>
<li><a href="http://www.cladistics.org/education/hennig86.html">Hennig 86</a></li>
</ul><ul>
<li><a href="http://www.bioinformaticssolutions.com/">Hyperclean</a>&nbsp;from Bioinformatics Solutions, Inc.</li>
</ul><ul>
<li><a href="http://www.mun.ca/biology/scarr/Directory.html">Memorial University of Newfoundland</a></li>
</ul><ul>
<li><a href="http://morphbank.ebc.uu.se/mrbayes/">Mr. Bayes</a></li>
</ul><ul>
<li><a href="http://www.cladistics.com/about_nona.htm">NONA</a></li>
</ul><ul>
<li><a href="http://evolve.zoo.ox.ac.uk/">Oxford University Evolutionary Biology Group</a></li>
</ul><ul>
<li><a href="http://flatpebble.nceas.ucsb.edu/public/">Paleobiology Database</a></li>
</ul><ul>
<li><a href="http://paup.csit.fsu.edu/index.html">PAUP</a></li>
</ul><ul>
<li><a href="http://evolution.genetics.washington.edu/phylip.html">Phylip Homepage</a></li>
</ul><ul>
<li><a href="http://research.amnh.org/scicomp/projects/poy.php">Poy</a></li>
</ul><ul>
<li><a href="http://www.sinauer.com/">Sinauer Associates</a></li>
</ul><ul>
<li><a href="http://www.cladistics.org/downloads/webtnt.html">TNT</a>-Tree Analysis Using New Technology</li>
</ul><ul>
<li><a href="http://www.treebase.org/treebase/index.html">Tree Base</a></li>
</ul><ul>
<li><a href="http://www.treefinder.de/">Treefinder</a></li>
</ul><ul>
<li><a href="http://www.tree-puzzle.de/">Tree-Puzzle</a></li>
</ul><ul>
<li><a href="http://taxonomy.zoology.gla.ac.uk/rod/treeview.html">Tree View</a>-Taxonomy and Systematics Group at Glasgow</li>
</ul><ul>
<li><a href="http://evolution.genetics.washington.edu/phylip/software.html">Washington University</a>-List of Phylogeny Software</li>
</ul>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/2882/phylogenetics</guid>
	<pubDate>Fri, 23 Aug 2013 03:53:43 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/2882/phylogenetics</link>
	<title><![CDATA[Phylogenetics]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/fQwI90bkJl4" frameborder="0" allowfullscreen></iframe>006 - Phylogenetics

Paul Andersen discusses the specifics of phylogenetics.  The evolutionary relationships of organisms are discovered through both morphological and molecular data.  A specific type of phylogenetic tree, the cladogram, is also covered.

Intro Music Atribution
Title: I4dsong_loop_main.wav
Artist: CosmicD
Link to sound: http://www.freesound.org/people/CosmicD/sounds/72556/
Creative Commons Atribution License]]></description>
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/11107/the-minerva-research-group-for-bioinformatics</guid>
  <pubDate>Tue, 27 May 2014 15:48:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Minerva Research Group for Bioinformatics]]></title>
  <description><![CDATA[
<p>The focus of the bioinformatics group is to use computational approaches to gain an insight into genome evolution in primates.</p>

<p>http://www.eva.mpg.de/genetics/bioinformatics/overview.html?Fsize=0%2C%20%40%2F%27</p>

<p>Kelso Group<br />Department of Evolutionary Genetics<br />Max Planck Institute for Evolutionary Anthropology<br />Deutscher Platz 6<br />04103 Leipzig<br />Germany<br />Phone: +49 341 3550 500</p>

<p>Job: <br />http://www.eva.mpg.de/genetics/bioinformatics/jobs.html?Fsize=0%2C%2B%40</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/6027/sharing-a-million-genomes-yves-moreau-at-tedxbrussels</guid>
	<pubDate>Sun, 03 Nov 2013 19:04:25 -0600</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/6027/sharing-a-million-genomes-yves-moreau-at-tedxbrussels</link>
	<title><![CDATA[Sharing a million genomes: Yves Moreau at TEDxbrussels]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/uYfyW7c23y4" frameborder="0" allowfullscreen></iframe>In the spirit of ideas worth spreading, TEDx is a program of local, self-organized events that bring people together to share a TED-like experience. At a TEDx event, TEDTalks video and live speakers combine to spark deep discussion and connection in a small group. These local, self-organized events are branded TEDx, where x = independently organized TED event. The TED Conference provides general guidance for the TEDx program, but individual TEDx events are self-organized.* (*Subject to certain rules and regulations)]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/11582/monitor-running-jobs-on-linux-server</guid>
	<pubDate>Fri, 06 Jun 2014 16:18:43 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/11582/monitor-running-jobs-on-linux-server</link>
	<title><![CDATA[Monitor running jobs on Linux server]]></title>
	<description><![CDATA[<p>You as a bioinformatican run lots of program on your servers. Sometime the shared server is also used by your colleague. If server is busy you sometime need to check the running programs and want to monitor the running programs as well. The "top" command will come in handy when you need to find out if things are still running, how long they&rsquo;ve been running, or how much memory is being used.<br /><br />&lsquo;top&rsquo; is very simple to run: type<br /><br />%% top<br /><br />You&rsquo;ll get a screen that looks like this, and is updated regularly:<br /><br /><img src="http://bioinformaticsonline.com/mod/photo/top.png" width="659" height="582" alt="image" style="border: 0px;"><br />Simple, right? Heh.<br /><br />First! Note that you can use &lsquo;q&rsquo; or &lsquo;CTRL-C&rsquo; to exit from &lsquo;top&rsquo;.<br /><br />Now let&rsquo;s read and understand at each line independently.<br /><br />The first line:<br /><br />top - 23:00:48 up 39 days,&nbsp; 2 user,&nbsp; load average: 0.00, 0.00, 0.00<br /><br />The first line tells you the current time, how long the machine has been up, how many users are logged in, and the short/medium/long-term compute load on the machine. If you run something for a long time, you&rsquo;ll see these numbers go up. Right now, the machine is basically just sitting there, so these are all close to 0.<br /><br />The second line:</p><p>Tasks:&nbsp; 239 total,&nbsp;&nbsp; 1 running,&nbsp; 238 sleeping,&nbsp;&nbsp; 0 stopped,&nbsp;&nbsp; 0 zombie<br /><br />This line tells you how many processes are running. If you are using laptops machines it&rsquo;s not so interesting because you really are the only one using this machine.<br /><br />Cpu(s):&nbsp; 0.0%us,&nbsp; 0.0%sy,&nbsp; 0.0%ni,100.0%id,&nbsp; 0.0%wa,&nbsp; 0.0%hi,&nbsp; 0.0%si,&nbsp; 0.0%st<br /><br />This line contains the CPU load. The first two numbers are how busy the system is doing computation (&ldquo;us&rdquo; stands for &ldquo;user&rdquo;) and how busy the system is doing system-y things like accessing disks or network (&ldquo;sy&rdquo; stands for &ldquo;system&rdquo;). We&rsquo;ll talk more about this later.<br /><br />Mem:&nbsp;&nbsp; 49457320k total,&nbsp;&nbsp;&nbsp; 3492174k used,&nbsp; 14535596k free,&nbsp;&nbsp;&nbsp; 1435148k buffers<br /><br />This should be easy to understand &ndash; how much memory you&rsquo;re using! <br /><br />Swap:&nbsp;&nbsp; 539356k total,&nbsp;&nbsp; 28332k used,&nbsp;&nbsp; 836562k free,&nbsp;&nbsp;&nbsp; 29862014k cached<br /><br />Swap is just on-disk memory that can be used to &ldquo;swap&rdquo; out programs from main memory. Again, we&rsquo;ll talk about this later.:<br /><br />PID USER&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; PR&nbsp; NI&nbsp; VIRT&nbsp; RES&nbsp; SHR S %CPU %MEM&nbsp;&nbsp;&nbsp; TIME+&nbsp; COMMAND<br />&nbsp; 1 root&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 39 &nbsp; 19&nbsp; 0&nbsp; 0&nbsp; 0 S&nbsp; 0.0&nbsp; 0.0&nbsp;&nbsp; 246:57.22 kipmi0<br />&nbsp; 2 root&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; RT&nbsp;&nbsp; 0&nbsp;&nbsp;&nbsp;&nbsp; 0&nbsp;&nbsp;&nbsp; 0&nbsp;&nbsp;&nbsp; 0 S&nbsp; 0.0&nbsp; 0.0&nbsp;&nbsp; 0:00.00 migration/0<br /><br />And... finally! What&rsquo;s actually running! The two most important numbers are the %CPU and %MEM towards the right, as well as the COMMAND. This tells you how compute- and memory-intensive your program is. Right now, nothing&rsquo;s running so the numbers aren&rsquo;t very interesting, but just wait until we run something...</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/8175/the-future-of-personalized-medicine</guid>
	<pubDate>Thu, 06 Feb 2014 00:21:26 -0600</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/8175/the-future-of-personalized-medicine</link>
	<title><![CDATA[The Future of Personalized Medicine]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/WUQ_qVe9HGQ" frameborder="0" allowfullscreen></iframe>Howard Jacob speaking on Personalize Medicine at the Illumina Meeting in Feb. of 2013.]]></description>
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/33903/visiting-scientist-computational-genomics</guid>
  <pubDate>Mon, 17 Jul 2017 07:20:18 -0500</pubDate>
  <link></link>
  <title><![CDATA[Visiting Scientist - Computational Genomics]]></title>
  <description><![CDATA[
<p>ICRISAT is a non-profit, non-political organization that conducts agricultural research for development in Asia and sub-Saharan Africa with a wide array of partners throughout the world. ICRISAT and its partners help empower those living in the semi-arid tropics, especially smallholder farmers, to overcome poverty, hunger, malnutrition and a degraded environment through more efficient and profitable agriculture. </p>

<p>ICRISAT is headquartered in Patancheru near Hyderabad, India, with two regional hubs and five country offices in sub-Saharan Africa. ICRISAT, established in 1972, is a member of the CGIAR Consortium. For more details, see www.icrisat.org.</p>

<p>Job Responsibilities:<br />Planning and execution of different NGS/genomics data analysis<br />Apply, maintain, and support cutting-edge pipelines for the analysis and interpretation of NGS data<br />Analyze large-scale genomic datasets generated internally and through collaboration with others<br />Genome wide analysis- LD analysis, hapmap, genetic map construction and qtl mapping<br />Expression analysis based on RNA-seq, gene ontology and metabolic pathway data<br />Sequence level analysis like gene family analysis, orthology/paralogy etc.<br />Familiarity with genomic and biological information databases<br />Compilation and interpretation of results and writing reports<br />Experience working independently and in a team environment<br />Requirements:</p>

<p>PhD or M.Sc with 2-3 years experience from reputed institute in the area of life science or similar Knowledge in Next Generation Sequencing (NGS) data analysis. Should be familiar with various sequencing platforms. Sound knowledge of genomics and molecular biology is must. Proficient in any one of the programming/scripting in languages: Python, Perl, PHP, R, Shell Scripting. Must be experienced in working on Linux and CLI environment. Ability to work as team as well as independently with minimal support. Fluency in spoken and written English is essential. </p>

<p>NGS techniques like sequence alignment, variant calling based on whole genome re-sequencing and genotyping-by-sequencing (GBS), RNA-Seq/transcriptome analysis<br />Knowledge of various standard NGS related tool<br />Ability to solve complex problems in advanced genomics research areas<br />Ease and interest in working with people from diverse backgrounds<br />Excellent oral/written communication and interpersonal/networking skills<br />General: <br />This position is contract for a period of two years.</p>

<p>How to apply:<br />Applicants should apply on or before 27-July-2017, with latest Curriculum Vitae, and the names and contact information of three references that are knowledgeable about your professional qualifications and work experience. All applications will be acknowledged, however only short listed candidates will be contacted<br />Please CLICK HERE to submit your application. <br />ICRISAT is an equal opportunity employer</p>

<p>http://icrisat.careersitemanager.com/job-listings-Visiting-Scientist-Computational-Genomics-ICRISAT-Hyderabad-Secunderabad-2-to-4-years-060717000278</p>
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